Rmu_ssc0000199.1_g000001

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000199.1
Physical Location & Seq
Reverse (-)
1324 .. 2508
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000199.1_g000001.1.cds

Sequence Viewer

Length: 1185 bp
ctgtcatctcctcctccaccacctcatcaccatgactatcctaagccaccatctccatcacctccaccgccaccacatcatcatcatcatcactaccctaaaccatcaccacctcctccatcaccatctcctccgccaccgcatcaccatgactatcctaaacctccgccaccttctccttcaccacctcaccaccatgactaccctaagcctccaccacccagtgcttcaccaccacaccaccatgactacccaaagcctccaccacctactgcatcaccaccacatcaccatgactatccaccgccaacctgggctactcctccagcttcaccaccatcagttccagcactgccaccacctcacggctcggctccaccaccacatggttatcatcacaccccacctactgccctcccaccaccacattaccctccaaaatcatcaccaccaaaacccagctatgaggcgccacctccaaagtccgtatacccaccaaaacccagtgaaggtgctcctccacccaaaccagtatatccaccaaagccaagtaagggcgcaccaccccctaagtcgtacccaccaaagccaagcaagggcgcaccgccaccaaggtccgtatacccaccaaagcccagtaagggagctccaccaccgaaatcttcatatccaccaaagccaagcaagggagctcctccaccaaagtcagtaatatatccaccaaagccaagtaagggtgcgccacctccagggtacaatggacattttcctccacctcccacatactacggtgctcctcctccacctttcggaggcatcccaccgtcctccaatgaactggccccacctcccggcgggaaaaatcacaccactgtcatcgccgtgtgtgtctcactaggcggtgcattcttcctcgcattccttctggtcggtctcttttgctttgccaagaagaagaagaagagagtgatggttcccgcagccgttccttgcgaacccgaagaagaagtccatgaaacagtcatagcaacaggtgtttacggcggcggcgaagcaagtgctgctgcagcccgaggaggagcaggttacgggggagaaggagggggcccaccacctcatgaacccgagatagtcggggctggtggtgccggtggtgctggttatggtcatcatccaagttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

394

Amino Acids

40.74

Weight (kDa)

9.48

Isoelectric Point (pI)

82.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1073
AccB1I GGYRCC 2 cut(s) 469, 1145
AccB7I CCANNNNNTGG 1 cut(s) 386
AccI GTMKAC 2 cut(s) 489, 621
AcyI GRCGYC 1 cut(s) 470
AdeI CACNNNGTG 1 cut(s) 224
AfaI GTAC 2 cut(s) 578, 755
AjnI CCWGG 2 cut(s) 311, 748
AluBI AGCT 4 cut(s) 329, 462, 647, 692
AluI AGCT 4 cut(s) 329, 462, 647, 692
Alw21I GWGCWC 4 cut(s) 517, 649, 694, 796
Alw26I GTCTC 2 cut(s) 895, 938
Ama87I CYCGRG 2 cut(s) 1071, 1124
AoxI GGCC 2 cut(s) 840, 1105
ApaI GGGCCC 1 cut(s) 1109
ApeKI GCWGC 4 cut(s) 980, 1061, 1064, 1067
ArsI GACNNNNNNTTYG 2 cut(s) 993, 1025
AspLEI GCGC 4 cut(s) 472, 560, 602, 742
AspS9I GGNCC 4 cut(s) 615, 841, 1105, 1106
AsuC2I CCSGG 1 cut(s) 852
AvaI CYCGRG 2 cut(s) 1071, 1124
AvaII GGWCC 1 cut(s) 615
BaeGI GKGCMC 1 cut(s) 1109
BanI GGYRCC 2 cut(s) 469, 1145
BanII GRGCYC 3 cut(s) 649, 694, 1109
Bbv12I GWGCWC 4 cut(s) 517, 649, 694, 796
BbvI GCAGC 4 cut(s) 992, 1048, 1051, 1079
BccI CCATC 7 cut(s) 58, 64, 112, 127, 133, 346, 964
BceAI ACGGC 4 cut(s) 382, 866, 968, 1057
BcgI CGANNNNNNTGC 2 cut(s) 1040, 1074
BciT130I CCWGG 2 cut(s) 313, 750
BcnI CCSGG 1 cut(s) 852
BcoDI GTCTC 2 cut(s) 895, 938
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 1 cut(s) 473
BfuAI ACCTGC 1 cut(s) 1073
BisI GCNGC 6 cut(s) 981, 1045, 1048, 1062, 1065, 1068
BlsI GCNGC 6 cut(s) 982, 1046, 1049, 1063, 1066, 1069
Bme1390I CCNGG 3 cut(s) 313, 750, 852
Bme18I GGWCC 1 cut(s) 615
BmeT110I CYCGRG 2 cut(s) 1071, 1124
BmgT120I GGNCC 4 cut(s) 615, 841, 1105, 1106
BmiI GGNNCC 7 cut(s) 375, 471, 843, 975, 1106, 1107, 1147
BmrFI CCNGG 3 cut(s) 313, 750, 852
BmrI ACTGGG 3 cut(s) 216, 498, 630
BmsI GCATC 3 cut(s) 151, 284, 825
BmuI ACTGGG 3 cut(s) 216, 498, 630
BpmI CTGGAG 2 cut(s) 309, 732
Bpu10I CCTNAGC 2 cut(s) 42, 207
BpuMI CCSGG 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 470
BsaI GGTCTC 1 cut(s) 938
BsaJI CCNNGG 4 cut(s) 312, 611, 749, 1072
Bse118I RCCGGY 1 cut(s) 1148
Bse1I ACTGG 5 cut(s) 222, 504, 530, 636, 843
BseBI CCWGG 2 cut(s) 313, 750
BseDI CCNNGG 4 cut(s) 312, 611, 749, 1072
BseGI GGATG 2 cut(s) 816, 1171
BseNI ACTGG 5 cut(s) 222, 504, 530, 636, 843
BseRI GAGGAG 9 cut(s) 105, 120, 312, 507, 684, 786, 789, 1089, 1092
BseSI GKGCMC 1 cut(s) 1109
BseXI GCAGC 4 cut(s) 992, 1048, 1051, 1079
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 2 cut(s) 842, 1107
BshNI GGYRCC 2 cut(s) 469, 1145
BsiHKAI GWGCWC 4 cut(s) 517, 649, 694, 796
BsiHKCI CYCGRG 2 cut(s) 1071, 1124
BsiSI CCGG 2 cut(s) 852, 1149
BsmAI GTCTC 2 cut(s) 895, 938
BsmI GAATGC 2 cut(s) 905, 917
BsnI GGCC 2 cut(s) 842, 1107
Bso31I GGTCTC 1 cut(s) 938
BsoBI CYCGRG 2 cut(s) 1071, 1124
Bsp120I GGGCCC 1 cut(s) 1105
Bsp1286I GDGCHC 5 cut(s) 517, 649, 694, 796, 1109
BspANI GGCC 2 cut(s) 842, 1107
BspHI TCATGA 1 cut(s) 1117
BspLI GGNNCC 7 cut(s) 375, 471, 843, 975, 1106, 1107, 1147
BspMAI CTGCAG 1 cut(s) 1069
BspMI ACCTGC 1 cut(s) 1073
BspT107I GGYRCC 2 cut(s) 469, 1145
BspTNI GGTCTC 1 cut(s) 938
BsrFI RCCGGY 1 cut(s) 1148
BsrI ACTGG 5 cut(s) 222, 504, 530, 636, 843
BssAI RCCGGY 1 cut(s) 1148
BssECI CCNNGG 4 cut(s) 312, 611, 749, 1072
BssNAI GTATAC 2 cut(s) 490, 622
BssNI GRCGYC 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 611
Bst1107I GTATAC 2 cut(s) 490, 622
Bst2UI CCWGG 2 cut(s) 313, 750
Bst4CI ACNGT 4 cut(s) 791, 825, 874, 1021
Bst6I CTCTTC 1 cut(s) 956
BstACI GRCGYC 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 1061
BstDEI CTNAG 3 cut(s) 42, 207, 570
BstENI CCTNNNNNAGG 1 cut(s) 810
BstF5I GGATG 2 cut(s) 816, 1171
BstH2I RGCGCY 1 cut(s) 473
BstHHI GCGC 4 cut(s) 472, 560, 602, 742
BstMAI GTCTC 2 cut(s) 895, 938
BstMWI GCNNNNNNNGC 4 cut(s) 1061, 1067, 1145, 1154
BstNI CCWGG 2 cut(s) 313, 750
BstSCI CCNGG 3 cut(s) 311, 748, 850
BstSFI CTRYAG 1 cut(s) 1065
BstSLI GKGCMC 1 cut(s) 1109
BstV1I GCAGC 4 cut(s) 992, 1048, 1051, 1079
BstXI CCANNNNNNTGG 1 cut(s) 838
BstZ17I GTATAC 2 cut(s) 490, 622
BsuRI GGCC 2 cut(s) 842, 1107
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 2 cut(s) 816, 1171
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 4 cut(s) 229, 350, 511, 870
BveI ACCTGC 1 cut(s) 1073
CciI TCATGA 1 cut(s) 1117
CfoI GCGC 4 cut(s) 472, 560, 602, 742
Cfr10I RCCGGY 1 cut(s) 1148
Cfr13I GGNCC 4 cut(s) 615, 841, 1105, 1106
Csp6I GTAC 2 cut(s) 577, 754
CviAII CATG 8 cut(s) 32, 149, 197, 245, 293, 386, 1013, 1118
CviQI GTAC 2 cut(s) 577, 754
DdeI CTNAG 3 cut(s) 42, 207, 570
DinI GGCGCC 1 cut(s) 471
DraIII CACNNNGTG 1 cut(s) 224
Eam1104I CTCTTC 1 cut(s) 956
EarI CTCTTC 1 cut(s) 956
EciI GGCGGA 2 cut(s) 123, 156
Ecl136II GAGCTC 2 cut(s) 647, 692
Eco130I CCWWGG 1 cut(s) 611
Eco24I GRGCYC 3 cut(s) 649, 694, 1109
Eco31I GGTCTC 1 cut(s) 938
Eco47I GGWCC 1 cut(s) 615
Eco53kI GAGCTC 2 cut(s) 647, 692
Eco88I CYCGRG 2 cut(s) 1071, 1124
EcoICRI GAGCTC 2 cut(s) 647, 692
EcoNI CCTNNNNNAGG 1 cut(s) 810
EcoO109I RGGNCCY 1 cut(s) 1105
EcoRII CCWGG 2 cut(s) 311, 748
EcoT14I CCWWGG 1 cut(s) 611
EcoT38I GRGCYC 3 cut(s) 649, 694, 1109
EgeI GGCGCC 1 cut(s) 471
EheI GGCGCC 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 8 cut(s) 35, 152, 200, 248, 296, 389, 1016, 1121
FatI CATG 8 cut(s) 31, 148, 196, 244, 292, 385, 1012, 1117
FauI CCCGC 2 cut(s) 848, 985
FblI GTMKAC 2 cut(s) 489, 621
Fnu4HI GCNGC 6 cut(s) 981, 1045, 1048, 1062, 1065, 1068
FokI GGATG 2 cut(s) 803, 1158
FriOI GRGCYC 3 cut(s) 649, 694, 1109
Fsp4HI GCNGC 6 cut(s) 981, 1045, 1048, 1062, 1065, 1068
FspBI CTAG 1 cut(s) 896
GlaI GCGC 4 cut(s) 471, 559, 601, 741
GluI GCNGC 6 cut(s) 981, 1045, 1048, 1062, 1065, 1068
GsaI CCCAGC 1 cut(s) 462
GsuI CTGGAG 2 cut(s) 309, 732
HaeII RGCGCY 1 cut(s) 473
HaeIII GGCC 2 cut(s) 842, 1107
HapII CCGG 2 cut(s) 852, 1149
HhaI GCGC 4 cut(s) 472, 560, 602, 742
Hin1I GRCGYC 1 cut(s) 470
Hin1II CATG 8 cut(s) 35, 152, 200, 248, 296, 389, 1016, 1121
Hin6I GCGC 4 cut(s) 470, 558, 600, 740
HinP1I GCGC 4 cut(s) 470, 558, 600, 740
HpaII CCGG 2 cut(s) 852, 1149
Hpy166II GTNNAC 3 cut(s) 490, 622, 1039
Hpy188I TCNGA 1 cut(s) 812
Hpy188III TCNNGA 1 cut(s) 1118
Hpy8I GTNNAC 3 cut(s) 490, 622, 1039
HpyAV CCTTC 5 cut(s) 183, 189, 503, 932, 1091
HpyCH4III ACNGT 4 cut(s) 791, 825, 874, 1021
HpyCH4V TGCA 3 cut(s) 275, 905, 1067
HpyF10VI GCNNNNNNNGC 4 cut(s) 1061, 1067, 1145, 1154
HpyF3I CTNAG 3 cut(s) 42, 207, 570
Hsp92I GRCGYC 1 cut(s) 470
Hsp92II CATG 8 cut(s) 35, 152, 200, 248, 296, 389, 1016, 1121
HspAI GCGC 4 cut(s) 470, 558, 600, 740
KasI GGCGCC 1 cut(s) 469
LmnI GCTCC 8 cut(s) 379, 520, 644, 652, 689, 697, 799, 1079
Lsp1109I GCAGC 4 cut(s) 992, 1048, 1051, 1079
LweI GCATC 3 cut(s) 151, 284, 825
MaeI CTAG 1 cut(s) 896
MaeIII GTNAC 1 cut(s) 1085
MboII GAAGA 8 cut(s) 654, 901, 964, 967, 970, 973, 1013, 1016
MhlI GDGCHC 5 cut(s) 517, 649, 694, 796, 1109
Mly113I GGCGCC 1 cut(s) 470
MseI TTAA 1 cut(s) 1183
MslI CAYNNNNRTG 6 cut(s) 30, 147, 195, 243, 291, 881
MspI CCGG 2 cut(s) 852, 1149
MspR9I CCNGG 3 cut(s) 313, 750, 852
Mva1269I GAATGC 2 cut(s) 905, 917
MvaI CCWGG 2 cut(s) 313, 750
MwoI GCNNNNNNNGC 4 cut(s) 1061, 1067, 1145, 1154
NarI GGCGCC 1 cut(s) 470
NciI CCSGG 1 cut(s) 852
NlaIII CATG 8 cut(s) 35, 152, 200, 248, 296, 389, 1016, 1121
NlaIV GGNNCC 7 cut(s) 375, 471, 843, 975, 1106, 1107, 1147
NmeAIII GCCGAG 1 cut(s) 350
PagI TCATGA 1 cut(s) 1117
PcsI WCGNNNNNNNCGW 1 cut(s) 1047
PctI GAATGC 2 cut(s) 905, 917
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 6 cut(s) 982, 1046, 1049, 1063, 1066, 1069
PluTI GGCGCC 1 cut(s) 473
Psp124BI GAGCTC 2 cut(s) 649, 694
Psp6I CCWGG 2 cut(s) 311, 748
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 311, 748
PspN4I GGNNCC 7 cut(s) 375, 471, 843, 975, 1106, 1107, 1147
PspOMI GGGCCC 1 cut(s) 1105
PspPI GGNCC 4 cut(s) 615, 841, 1105, 1106
PstI CTGCAG 1 cut(s) 1069
RsaI GTAC 2 cut(s) 578, 755
RsaNI GTAC 2 cut(s) 577, 754
RseI CAYNNNNRTG 6 cut(s) 30, 147, 195, 243, 291, 881
SacI GAGCTC 2 cut(s) 649, 694
SaqAI TTAA 1 cut(s) 1183
SatI GCNGC 6 cut(s) 981, 1045, 1048, 1062, 1065, 1068
Sau96I GGNCC 4 cut(s) 615, 841, 1105, 1106
ScrFI CCNGG 3 cut(s) 313, 750, 852
SduI GDGCHC 5 cut(s) 517, 649, 694, 796, 1109
SfaNI GCATC 3 cut(s) 151, 284, 825
SfcI CTRYAG 1 cut(s) 1065
SfoI GGCGCC 1 cut(s) 471
SinI GGWCC 1 cut(s) 615
SmiMI CAYNNNNRTG 6 cut(s) 30, 147, 195, 243, 291, 881
SspDI GGCGCC 1 cut(s) 469
SspMI CTAG 1 cut(s) 896
SstI GAGCTC 2 cut(s) 649, 694
StyD4I CCNGG 3 cut(s) 311, 748, 850
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 4 cut(s) 791, 825, 874, 1021
TaqII GACCGA 1 cut(s) 920
TauI GCSGC 2 cut(s) 1047, 1050
Tru1I TTAA 1 cut(s) 1183
Tru9I TTAA 1 cut(s) 1183
TscAI CASTG 4 cut(s) 229, 357, 511, 877
TseI GCWGC 4 cut(s) 980, 1061, 1064, 1067
TspDTI ATGAA 4 cut(s) 654, 849, 1029, 1134
TspGWI ACGGA 2 cut(s) 475, 607
TspRI CASTG 4 cut(s) 229, 357, 511, 877
Van91I CCANNNNNTGG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 810
XcmI CCANNNNNNNNNTGG 1 cut(s) 309
XmiI GTMKAC 2 cut(s) 489, 621
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.