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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 373, 826 |
| Acc36I | ACCTGC | 2 cut(s) | 373, 826 |
| AccII | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| AcoI | YGGCCR | 2 cut(s) | 3, 722 |
| AcsI | RAATTY | 1 cut(s) | 2414 |
| AcuI | CTGAAG | 2 cut(s) | 1392, 1971 |
| AfaI | GTAC | 3 cut(s) | 2467, 2542, 2626 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2842 |
| AgsI | TTSAA | 2 cut(s) | 1581, 2457 |
| AjiI | CACGTC | 1 cut(s) | 2829 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2596, 2628 |
| AluBI | AGCT | 3 cut(s) | 1103, 2306, 2321 |
| AluI | AGCT | 3 cut(s) | 1103, 2306, 2321 |
| Alw26I | GTCTC | 3 cut(s) | 2173, 2216, 2784 |
| AoxI | GGCC | 2 cut(s) | 3, 722 |
| ApeKI | GCWGC | 4 cut(s) | 253, 406, 670, 1723 |
| ApoI | RAATTY | 1 cut(s) | 2414 |
| AspLEI | GCGC | 1 cut(s) | 2800 |
| AsuII | TTCGAA | 1 cut(s) | 2418 |
| AxyI | CCTNAGG | 1 cut(s) | 2403 |
| BalI | TGGCCA | 1 cut(s) | 5 |
| BbvI | GCAGC | 4 cut(s) | 265, 393, 657, 1735 |
| BceAI | ACGGC | 1 cut(s) | 2745 |
| BclI | TGATCA | 2 cut(s) | 2335, 2701 |
| BcoDI | GTCTC | 3 cut(s) | 2173, 2216, 2784 |
| BfaI | CTAG | 6 cut(s) | 212, 416, 680, 1130, 1748, 1898 |
| BfmI | CTRYAG | 1 cut(s) | 1098 |
| BfuAI | ACCTGC | 2 cut(s) | 373, 826 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 721 |
| BmcAI | AGTACT | 1 cut(s) | 2467 |
| BmgBI | CACGTC | 1 cut(s) | 2829 |
| BmiI | GGNNCC | 1 cut(s) | 2614 |
| BpmI | CTGGAG | 2 cut(s) | 849, 1851 |
| Bpu14I | TTCGAA | 1 cut(s) | 2418 |
| BpuEI | CTTGAG | 2 cut(s) | 2484, 2559 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2340 |
| BsaI | GGTCTC | 1 cut(s) | 2216 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1699, 1729, 1849, 1879 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2842 |
| Bse1I | ACTGG | 5 cut(s) | 6, 866, 1868, 2616, 2712 |
| Bse21I | CCTNAGG | 1 cut(s) | 2403 |
| Bse3DI | GCAATG | 4 cut(s) | 248, 452, 905, 1490 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2340 |
| BseGI | GGATG | 6 cut(s) | 1336, 1396, 1426, 1567, 1975, 2005 |
| BseJI | GATNNNNATC | 1 cut(s) | 2340 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2842 |
| BseMI | GCAATG | 4 cut(s) | 248, 452, 905, 1490 |
| BseMII | CTCAG | 2 cut(s) | 2303, 2394 |
| BseNI | ACTGG | 5 cut(s) | 6, 866, 1868, 2616, 2712 |
| BseRI | GAGGAG | 3 cut(s) | 402, 1962, 2279 |
| BseXI | GCAGC | 4 cut(s) | 265, 393, 657, 1735 |
| BseYI | CCCAGC | 1 cut(s) | 2302 |
| Bsh1236I | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2851 |
| BshFI | GGCC | 2 cut(s) | 5, 724 |
| BsiEI | CGRYCG | 1 cut(s) | 2851 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2842 |
| BsmAI | GTCTC | 3 cut(s) | 2173, 2216, 2784 |
| BsmI | GAATGC | 1 cut(s) | 2195 |
| BsnI | GGCC | 2 cut(s) | 5, 724 |
| Bso31I | GGTCTC | 1 cut(s) | 2216 |
| Bsp119I | TTCGAA | 1 cut(s) | 2418 |
| Bsp143I | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| Bsp68I | TCGCGA | 2 cut(s) | 2475, 2766 |
| BspANI | GGCC | 2 cut(s) | 5, 724 |
| BspCNI | CTCAG | 2 cut(s) | 2302, 2395 |
| BspFNI | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| BspLI | GGNNCC | 1 cut(s) | 2614 |
| BspMI | ACCTGC | 2 cut(s) | 373, 826 |
| BspT104I | TTCGAA | 1 cut(s) | 2418 |
| BspTNI | GGTCTC | 1 cut(s) | 2216 |
| BsrDI | GCAATG | 4 cut(s) | 248, 452, 905, 1490 |
| BsrI | ACTGG | 5 cut(s) | 6, 866, 1868, 2616, 2712 |
| BssMI | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| Bst4CI | ACNGT | 8 cut(s) | 225, 429, 882, 1633, 2016, 2149, 2260, 2837 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2201 |
| BstBI | TTCGAA | 1 cut(s) | 2418 |
| BstC8I | GCNNGC | 2 cut(s) | 2222, 2639 |
| BstDEI | CTNAG | 2 cut(s) | 2289, 2403 |
| BstF5I | GGATG | 6 cut(s) | 1336, 1396, 1426, 1567, 1975, 2005 |
| BstFNI | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| BstHHI | GCGC | 1 cut(s) | 2800 |
| BstKTI | GATC | 8 cut(s) | 2295, 2338, 2443, 2494, 2569, 2653, 2692, 2704 |
| BstMAI | GTCTC | 3 cut(s) | 2173, 2216, 2784 |
| BstMBI | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| BstMCI | CGRYCG | 1 cut(s) | 2851 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 244, 253, 448, 721, 1168, 1504, 2201 |
| BstNSI | RCATGY | 4 cut(s) | 168, 372, 825, 1089 |
| BstSFI | CTRYAG | 1 cut(s) | 1098 |
| BstUI | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| BstV1I | GCAGC | 4 cut(s) | 265, 393, 657, 1735 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2366, 2534 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2403 |
| BsuRI | GGCC | 2 cut(s) | 5, 724 |
| BtgZI | GCGATG | 3 cut(s) | 1152, 2281, 2490 |
| BtrI | CACGTC | 1 cut(s) | 2829 |
| BtsCI | GGATG | 6 cut(s) | 1336, 1396, 1426, 1567, 1975, 2005 |
| BtsI | GCAGTG | 6 cut(s) | 500, 716, 953, 1172, 2033, 2383 |
| BtuMI | TCGCGA | 2 cut(s) | 2475, 2766 |
| BveI | ACCTGC | 2 cut(s) | 373, 826 |
| Cac8I | GCNNGC | 2 cut(s) | 2222, 2639 |
| CfoI | GCGC | 1 cut(s) | 2800 |
| Csp6I | GTAC | 3 cut(s) | 2466, 2541, 2625 |
| CspCI | CAANNNNNGTGG | 8 cut(s) | 693, 728, 1473, 1508, 1761, 1796, 1911, 1946 |
| CviAII | CATG | 9 cut(s) | 108, 165, 369, 531, 579, 627, 822, 1029, 1086 |
| CviQI | GTAC | 3 cut(s) | 2466, 2541, 2625 |
| DdeI | CTNAG | 2 cut(s) | 2289, 2403 |
| DpnI | GATC | 8 cut(s) | 2294, 2337, 2442, 2493, 2568, 2652, 2691, 2703 |
| DpnII | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| EaeI | YGGCCR | 2 cut(s) | 3, 722 |
| Eco31I | GGTCTC | 1 cut(s) | 2216 |
| Eco57I | CTGAAG | 2 cut(s) | 1392, 1971 |
| Eco81I | CCTNAGG | 1 cut(s) | 2403 |
| EcoRI | GAATTC | 1 cut(s) | 2414 |
| FaeI | CATG | 9 cut(s) | 111, 168, 372, 534, 582, 630, 825, 1032, 1089 |
| FatI | CATG | 9 cut(s) | 107, 164, 368, 530, 578, 626, 821, 1028, 1085 |
| FauI | CCCGC | 2 cut(s) | 33, 756 |
| FbaI | TGATCA | 2 cut(s) | 2335, 2701 |
| FokI | GGATG | 6 cut(s) | 1323, 1383, 1413, 1554, 1962, 1992 |
| FspBI | CTAG | 6 cut(s) | 212, 416, 680, 1130, 1748, 1898 |
| GlaI | GCGC | 1 cut(s) | 2799 |
| GsaI | CCCAGC | 1 cut(s) | 2306 |
| GsuI | CTGGAG | 2 cut(s) | 849, 1851 |
| HaeIII | GGCC | 2 cut(s) | 5, 724 |
| HhaI | GCGC | 1 cut(s) | 2800 |
| Hin1II | CATG | 9 cut(s) | 111, 168, 372, 534, 582, 630, 825, 1032, 1089 |
| Hin6I | GCGC | 1 cut(s) | 2798 |
| HinP1I | GCGC | 1 cut(s) | 2798 |
| Hpy166II | GTNNAC | 7 cut(s) | 1679, 1739, 1799, 1829, 1889, 1949, 2281 |
| Hpy188I | TCNGA | 8 cut(s) | 2292, 2346, 2440, 2491, 2509, 2584, 2668, 2746 |
| Hpy188III | TCNNGA | 5 cut(s) | 2474, 2501, 2576, 2687, 2765 |
| Hpy8I | GTNNAC | 7 cut(s) | 1679, 1739, 1799, 1829, 1889, 1949, 2281 |
| Hpy99I | CGWCG | 5 cut(s) | 2475, 2526, 2601, 2766, 2787 |
| HpyCH4III | ACNGT | 8 cut(s) | 225, 429, 882, 1633, 2016, 2149, 2260, 2837 |
| HpyCH4IV | ACGT | 4 cut(s) | 2533, 2608, 2773, 2828 |
| HpyCH4V | TGCA | 7 cut(s) | 253, 368, 821, 1723, 2195, 2204, 2224 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 244, 253, 448, 721, 1168, 1504, 2201 |
| HpyF3I | CTNAG | 2 cut(s) | 2289, 2403 |
| HpySE526I | ACGT | 4 cut(s) | 2533, 2608, 2773, 2828 |
| Hsp92II | CATG | 9 cut(s) | 111, 168, 372, 534, 582, 630, 825, 1032, 1089 |
| HspAI | GCGC | 1 cut(s) | 2798 |
| Ksp22I | TGATCA | 2 cut(s) | 2335, 2701 |
| Kzo9I | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| LmnI | GCTCC | 2 cut(s) | 1265, 2266 |
| Lsp1109I | GCAGC | 4 cut(s) | 265, 393, 657, 1735 |
| MaeI | CTAG | 6 cut(s) | 212, 416, 680, 1130, 1748, 1898 |
| MaeII | ACGT | 4 cut(s) | 2533, 2608, 2773, 2828 |
| MalI | GATC | 8 cut(s) | 2294, 2337, 2442, 2493, 2568, 2652, 2691, 2703 |
| MboI | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| MboII | GAAGA | 9 cut(s) | 1428, 2144, 2242, 2245, 2402, 2432, 2444, 2495, 2732 |
| MfeI | CAATTG | 5 cut(s) | 242, 446, 710, 899, 2205 |
| MlsI | TGGCCA | 1 cut(s) | 5 |
| MluCI | AATT | 7 cut(s) | 242, 446, 710, 899, 2205, 2408, 2414 |
| MluNI | TGGCCA | 1 cut(s) | 5 |
| MlyI | GAGTC | 2 cut(s) | 2564, 2786 |
| MmeI | TCCRAC | 4 cut(s) | 206, 410, 863, 2856 |
| Mox20I | TGGCCA | 1 cut(s) | 5 |
| MscI | TGGCCA | 1 cut(s) | 5 |
| MseI | TTAA | 4 cut(s) | 1793, 1943, 2243, 2352 |
| MslI | CAYNNNNRTG | 9 cut(s) | 106, 163, 367, 529, 577, 625, 820, 1027, 2793 |
| Msp20I | TGGCCA | 1 cut(s) | 5 |
| MunI | CAATTG | 5 cut(s) | 242, 446, 710, 899, 2205 |
| Mva1269I | GAATGC | 1 cut(s) | 2195 |
| MvnI | CGCG | 3 cut(s) | 2475, 2766, 2800 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 244, 253, 448, 721, 1168, 1504, 2201 |
| NdeII | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| NlaIII | CATG | 9 cut(s) | 111, 168, 372, 534, 582, 630, 825, 1032, 1089 |
| NlaIV | GGNNCC | 1 cut(s) | 2614 |
| NmuCI | GTSAC | 5 cut(s) | 225, 429, 882, 1356, 2016 |
| NruI | TCGCGA | 2 cut(s) | 2475, 2766 |
| NspI | RCATGY | 4 cut(s) | 168, 372, 825, 1089 |
| NspV | TTCGAA | 1 cut(s) | 2418 |
| PaqCI | CACCTGC | 2 cut(s) | 373, 826 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 2530, 2605, 2770, 2779, 2791 |
| PctI | GAATGC | 1 cut(s) | 2195 |
| PfeI | GAWTC | 8 cut(s) | 2435, 2453, 2486, 2504, 2579, 2663, 2711, 2753 |
| PleI | GAGTC | 2 cut(s) | 2563, 2785 |
| PpsI | GAGTC | 2 cut(s) | 2563, 2785 |
| PspFI | CCCAGC | 1 cut(s) | 2302 |
| PspN4I | GGNNCC | 1 cut(s) | 2614 |
| RruI | TCGCGA | 2 cut(s) | 2475, 2766 |
| RsaI | GTAC | 3 cut(s) | 2467, 2542, 2626 |
| RsaNI | GTAC | 3 cut(s) | 2466, 2541, 2625 |
| RseI | CAYNNNNRTG | 9 cut(s) | 106, 163, 367, 529, 577, 625, 820, 1027, 2793 |
| SaqAI | TTAA | 4 cut(s) | 1793, 1943, 2243, 2352 |
| Sau3AI | GATC | 8 cut(s) | 2292, 2335, 2440, 2491, 2566, 2650, 2689, 2701 |
| ScaI | AGTACT | 1 cut(s) | 2467 |
| SchI | GAGTC | 2 cut(s) | 2564, 2786 |
| SfcI | CTRYAG | 1 cut(s) | 1098 |
| SfuI | TTCGAA | 1 cut(s) | 2418 |
| SmiMI | CAYNNNNRTG | 9 cut(s) | 106, 163, 367, 529, 577, 625, 820, 1027, 2793 |
| SmlI | CTYRAG | 2 cut(s) | 2499, 2574 |
| SmoI | CTYRAG | 2 cut(s) | 2499, 2574 |
| Sse9I | AATT | 7 cut(s) | 242, 446, 710, 899, 2205, 2408, 2414 |
| SspI | AATATT | 1 cut(s) | 657 |
| SspMI | CTAG | 6 cut(s) | 212, 416, 680, 1130, 1748, 1898 |
| TaaI | ACNGT | 8 cut(s) | 225, 429, 882, 1633, 2016, 2149, 2260, 2837 |
| TaiI | ACGT | 4 cut(s) | 2536, 2611, 2776, 2831 |
| TaqI | TCGA | 1 cut(s) | 2418 |
| TasI | AATT | 7 cut(s) | 242, 446, 710, 899, 2205, 2408, 2414 |
| TatI | WGTACW | 1 cut(s) | 2465 |
| TfiI | GAWTC | 8 cut(s) | 2435, 2453, 2486, 2504, 2579, 2663, 2711, 2753 |
| Tru1I | TTAA | 4 cut(s) | 1793, 1943, 2243, 2352 |
| Tru9I | TTAA | 4 cut(s) | 1793, 1943, 2243, 2352 |
| TseFI | GTSAC | 5 cut(s) | 225, 429, 882, 1356, 2016 |
| TseI | GCWGC | 4 cut(s) | 253, 406, 670, 1723 |
| Tsp45I | GTSAC | 5 cut(s) | 225, 429, 882, 1356, 2016 |
| TspGWI | ACGGA | 4 cut(s) | 315, 780, 972, 2858 |
| XapI | RAATTY | 1 cut(s) | 2414 |
| XceI | RCATGY | 4 cut(s) | 168, 372, 825, 1089 |
| XspI | CTAG | 6 cut(s) | 212, 416, 680, 1130, 1748, 1898 |
| ZrmI | AGTACT | 1 cut(s) | 2467 |