MD10G1045700.v1.1

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000458
Physical Location & Seq
Forward (+)
6123744 .. 6124046
303 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1045700.v1.1.491

Sequence Viewer

Length: 303 bp
ATGAACAAAACCAACTGCTCATCACCCATATTAACAGTTGAAGACCAAGAAATGCTTCGATACGTAAGTAAGAGAAAACTGACACCGGGGATTAGTAAGAGTCAAGAATTTGACACCTCAAGGACCAGGTTCAGCAAGCATAACCGGCTGAGCAAGAGTAGCAACCACTCCCCGACAAGTGAACGTAGGAAGGATCCATTTCCAATCAGGAGGCCATCCTCCGTTCCTATCATTGACTTTGATTTCGACCGGAGCAAAGCACTGGATGTCATTGATCGGGTGGACACAATTCGAAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

101

Amino Acids

11.6

Weight (kDa)

10.08

Isoelectric Point (pI)

69.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 188, 201
AcsI RAATTY 1 cut(s) 107
AgsI TTSAA 1 cut(s) 41
AjnI CCWGG 1 cut(s) 125
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AlwI GGATC 2 cut(s) 188, 201
AoxI GGCC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 107
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 15
AsuII TTCGAA 1 cut(s) 292
AvaII GGWCC 1 cut(s) 123
BaeI ACNNNNGTAYC 2 cut(s) 52, 85
BamHI GGATCC 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 48
BccI CCATC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 127
BcnI CCSGG 1 cut(s) 87
BlpI GCTNAGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 87, 127
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 87, 127
BpiI GAAGAC 1 cut(s) 48
Bpu1102I GCTNAGC 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 292
BpuEI CTTGAG 1 cut(s) 103
BpuMI CCSGG 1 cut(s) 87
BsaAI YACGTR 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 86
BsaWI WCCGGW 1 cut(s) 249
Bse118I RCCGGY 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 2 cut(s) 215, 271
BseMII CTCAG 1 cut(s) 140
BseNI ACTGG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 1 cut(s) 214
BsiEI CGRYCG 1 cut(s) 250
BsiSI CCGG 3 cut(s) 86, 145, 250
BsnI GGCC 1 cut(s) 214
Bsp119I TTCGAA 1 cut(s) 292
Bsp143I GATC 2 cut(s) 193, 274
Bsp1720I GCTNAGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 1 cut(s) 141
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 2 cut(s) 188, 201
BspT104I TTCGAA 1 cut(s) 292
BsrFI RCCGGY 1 cut(s) 144
BsrI ACTGG 1 cut(s) 267
BssAI RCCGGY 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 86
BssMI GATC 2 cut(s) 193, 274
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 37
BstBAI YACGTR 1 cut(s) 64
BstBI TTCGAA 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 215, 271
BstKTI GATC 2 cut(s) 196, 277
BstMBI GATC 2 cut(s) 193, 274
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 145, 159
BstNI CCWGG 1 cut(s) 127
BstSCI CCNGG 2 cut(s) 85, 125
BstSNI TACGTA 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 193
BstYI RGATCY 1 cut(s) 193
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 2 cut(s) 215, 271
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 1 cut(s) 137
Cfr10I RCCGGY 1 cut(s) 144
Cfr13I GGNCC 1 cut(s) 123
CsiI ACCWGGT 1 cut(s) 125
CviJI RGCY 2 cut(s) 148, 214
CviKI_1 RGCY 2 cut(s) 148, 214
DdeI CTNAG 1 cut(s) 149
DpnI GATC 2 cut(s) 195, 276
DpnII GATC 2 cut(s) 193, 274
Eco105I TACGTA 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 125
FaiI YATR 2 cut(s) 29, 141
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FokI GGATG 2 cut(s) 202, 278
HaeIII GGCC 1 cut(s) 214
HapII CCGG 3 cut(s) 86, 145, 250
HinfI GANTC 1 cut(s) 100
HpaII CCGG 3 cut(s) 86, 145, 250
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 2 cut(s) 182, 283
Hpy188III TCNNGA 2 cut(s) 104, 208
Hpy8I GTNNAC 2 cut(s) 182, 283
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4IV ACGT 2 cut(s) 63, 184
HpyF10VI GCNNNNNNNGC 2 cut(s) 145, 159
HpyF3I CTNAG 1 cut(s) 149
HpySE526I ACGT 2 cut(s) 63, 184
Kzo9I GATC 2 cut(s) 193, 274
LmnI GCTCC 1 cut(s) 252
LpnPI CCDG 7 cut(s) 99, 112, 139, 158, 193, 248, 263
MabI ACCWGGT 1 cut(s) 125
MaeII ACGT 2 cut(s) 63, 184
MalI GATC 2 cut(s) 195, 276
MboI GATC 2 cut(s) 193, 274
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 193
MluCI AATT 2 cut(s) 107, 288
MlyI GAGTC 1 cut(s) 109
MnlI CCTC 3 cut(s) 127, 204, 229
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 1 cut(s) 32
MspI CCGG 3 cut(s) 86, 145, 250
MspR9I CCNGG 2 cut(s) 87, 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 2 cut(s) 145, 159
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 193, 274
NlaIV GGNNCC 1 cut(s) 195
NspV TTCGAA 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 54
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
Ppu21I YACGTR 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 195
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 1 cut(s) 193
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 2 cut(s) 193, 274
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 87, 127
SetI ASST 4 cut(s) 66, 119, 131, 187
SexAI ACCWGGT 1 cut(s) 125
SfuI TTCGAA 1 cut(s) 292
SinI GGWCC 1 cut(s) 123
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
SnaBI TACGTA 1 cut(s) 64
Sse9I AATT 2 cut(s) 107, 288
StyD4I CCNGG 2 cut(s) 85, 125
TaaI ACNGT 1 cut(s) 37
TaiI ACGT 2 cut(s) 66, 187
TaqI TCGA 3 cut(s) 58, 246, 292
TasI AATT 2 cut(s) 107, 288
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TscAI CASTG 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 123
XapI RAATTY 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.