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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 228 |
| Acc36I | ACCTGC | 1 cut(s) | 1427 |
| AccB1I | GGYRCC | 2 cut(s) | 778, 1499 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 695 |
| AccI | GTMKAC | 2 cut(s) | 798, 930 |
| AcoI | YGGCCR | 2 cut(s) | 3, 178 |
| AcsI | RAATTY | 1 cut(s) | 14 |
| AcuI | CTGAAG | 1 cut(s) | 1374 |
| AcyI | GRCGYC | 1 cut(s) | 779 |
| AdeI | CACNNNGTG | 1 cut(s) | 533 |
| AfaI | GTAC | 2 cut(s) | 887, 1109 |
| AjnI | CCWGG | 2 cut(s) | 620, 1102 |
| AluBI | AGCT | 5 cut(s) | 51, 638, 771, 1001, 1046 |
| AluI | AGCT | 5 cut(s) | 51, 638, 771, 1001, 1046 |
| Alw21I | GWGCWC | 6 cut(s) | 100, 826, 958, 1003, 1048, 1150 |
| Alw26I | GTCTC | 3 cut(s) | 117, 1249, 1292 |
| Alw44I | GTGCAC | 1 cut(s) | 954 |
| Ama87I | CYCGRG | 2 cut(s) | 1425, 1478 |
| AoxI | GGCC | 4 cut(s) | 3, 178, 1194, 1459 |
| ApaI | GGGCCC | 1 cut(s) | 1463 |
| ApaLI | GTGCAC | 1 cut(s) | 954 |
| ApeKI | GCWGC | 4 cut(s) | 1334, 1415, 1418, 1421 |
| ApoI | RAATTY | 1 cut(s) | 14 |
| AspLEI | GCGC | 5 cut(s) | 229, 781, 869, 911, 1096 |
| AspS9I | GGNCC | 4 cut(s) | 924, 1195, 1459, 1460 |
| AsuC2I | CCSGG | 1 cut(s) | 1206 |
| AvaI | CYCGRG | 2 cut(s) | 1425, 1478 |
| AvaII | GGWCC | 1 cut(s) | 924 |
| BaeGI | GKGCMC | 2 cut(s) | 958, 1463 |
| BalI | TGGCCA | 2 cut(s) | 5, 180 |
| BanI | GGYRCC | 2 cut(s) | 778, 1499 |
| BanII | GRGCYC | 3 cut(s) | 1003, 1048, 1463 |
| Bbv12I | GWGCWC | 6 cut(s) | 100, 826, 958, 1003, 1048, 1150 |
| BbvI | GCAGC | 4 cut(s) | 1346, 1402, 1405, 1433 |
| BceAI | ACGGC | 4 cut(s) | 691, 1220, 1322, 1411 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1394, 1428 |
| BciT130I | CCWGG | 2 cut(s) | 622, 1104 |
| BcnI | CCSGG | 1 cut(s) | 1206 |
| BcoDI | GTCTC | 3 cut(s) | 117, 1249, 1292 |
| BfaI | CTAG | 1 cut(s) | 1250 |
| BfmI | CTRYAG | 2 cut(s) | 36, 1419 |
| BfoI | RGCGCY | 1 cut(s) | 782 |
| BfuAI | ACCTGC | 1 cut(s) | 1427 |
| BisI | GCNGC | 6 cut(s) | 1335, 1399, 1402, 1416, 1419, 1422 |
| BlsI | GCNGC | 6 cut(s) | 1336, 1400, 1403, 1417, 1420, 1423 |
| Bme1390I | CCNGG | 3 cut(s) | 622, 1104, 1206 |
| Bme18I | GGWCC | 1 cut(s) | 924 |
| BmeT110I | CYCGRG | 2 cut(s) | 1425, 1478 |
| BmgT120I | GGNCC | 4 cut(s) | 924, 1195, 1459, 1460 |
| BmiI | GGNNCC | 7 cut(s) | 684, 780, 1197, 1329, 1460, 1461, 1501 |
| BmrFI | CCNGG | 3 cut(s) | 622, 1104, 1206 |
| BmrI | ACTGGG | 4 cut(s) | 525, 807, 939, 984 |
| BmsI | GCATC | 4 cut(s) | 152, 460, 593, 1179 |
| BmuI | ACTGGG | 4 cut(s) | 525, 807, 939, 984 |
| BpmI | CTGGAG | 2 cut(s) | 618, 1086 |
| Bpu10I | CCTNAGC | 2 cut(s) | 339, 516 |
| BpuMI | CCSGG | 1 cut(s) | 1206 |
| BsaHI | GRCGYC | 1 cut(s) | 779 |
| BsaI | GGTCTC | 1 cut(s) | 1292 |
| BsaJI | CCNNGG | 6 cut(s) | 6, 175, 621, 920, 1103, 1426 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 72, 102 |
| Bse118I | RCCGGY | 1 cut(s) | 1502 |
| Bse1I | ACTGG | 6 cut(s) | 531, 813, 839, 945, 990, 1197 |
| BseBI | CCWGG | 2 cut(s) | 622, 1104 |
| BseDI | CCNNGG | 6 cut(s) | 6, 175, 621, 920, 1103, 1426 |
| BseGI | GGATG | 3 cut(s) | 196, 1170, 1525 |
| BseNI | ACTGG | 6 cut(s) | 531, 813, 839, 945, 990, 1197 |
| BseSI | GKGCMC | 2 cut(s) | 958, 1463 |
| BseXI | GCAGC | 4 cut(s) | 1346, 1402, 1405, 1433 |
| BseYI | CCCAGC | 1 cut(s) | 767 |
| BshFI | GGCC | 4 cut(s) | 5, 180, 1196, 1461 |
| BshNI | GGYRCC | 2 cut(s) | 778, 1499 |
| BsiHKAI | GWGCWC | 6 cut(s) | 100, 826, 958, 1003, 1048, 1150 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1425, 1478 |
| BsiSI | CCGG | 2 cut(s) | 1206, 1503 |
| BsmAI | GTCTC | 3 cut(s) | 117, 1249, 1292 |
| BsmBI | CGTCTC | 1 cut(s) | 117 |
| BsmI | GAATGC | 2 cut(s) | 1259, 1271 |
| BsnI | GGCC | 4 cut(s) | 5, 180, 1196, 1461 |
| Bso31I | GGTCTC | 1 cut(s) | 1292 |
| BsoBI | CYCGRG | 2 cut(s) | 1425, 1478 |
| Bsp120I | GGGCCC | 1 cut(s) | 1459 |
| Bsp1286I | GDGCHC | 7 cut(s) | 100, 826, 958, 1003, 1048, 1150, 1463 |
| Bsp19I | CCATGG | 1 cut(s) | 175 |
| BspANI | GGCC | 4 cut(s) | 5, 180, 1196, 1461 |
| BspHI | TCATGA | 1 cut(s) | 1471 |
| BspLI | GGNNCC | 7 cut(s) | 684, 780, 1197, 1329, 1460, 1461, 1501 |
| BspMAI | CTGCAG | 1 cut(s) | 1423 |
| BspMI | ACCTGC | 1 cut(s) | 1427 |
| BspT107I | GGYRCC | 2 cut(s) | 778, 1499 |
| BspTNI | GGTCTC | 1 cut(s) | 1292 |
| BsrFI | RCCGGY | 1 cut(s) | 1502 |
| BsrI | ACTGG | 6 cut(s) | 531, 813, 839, 945, 990, 1197 |
| BssAI | RCCGGY | 1 cut(s) | 1502 |
| BssECI | CCNNGG | 6 cut(s) | 6, 175, 621, 920, 1103, 1426 |
| BssNAI | GTATAC | 2 cut(s) | 799, 931 |
| BssNI | GRCGYC | 1 cut(s) | 779 |
| BssT1I | CCWWGG | 3 cut(s) | 6, 175, 920 |
| Bst1107I | GTATAC | 2 cut(s) | 799, 931 |
| Bst2UI | CCWGG | 2 cut(s) | 622, 1104 |
| Bst4CI | ACNGT | 5 cut(s) | 111, 1145, 1179, 1228, 1375 |
| Bst6I | CTCTTC | 1 cut(s) | 1310 |
| BstACI | GRCGYC | 1 cut(s) | 779 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1415 |
| BstDEI | CTNAG | 3 cut(s) | 339, 516, 879 |
| BstDSI | CCRYGG | 1 cut(s) | 175 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| BstF5I | GGATG | 3 cut(s) | 196, 1170, 1525 |
| BstH2I | RGCGCY | 1 cut(s) | 782 |
| BstHHI | GCGC | 5 cut(s) | 229, 781, 869, 911, 1096 |
| BstMAI | GTCTC | 3 cut(s) | 117, 1249, 1292 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1415, 1421, 1499, 1508 |
| BstNI | CCWGG | 2 cut(s) | 622, 1104 |
| BstSCI | CCNGG | 3 cut(s) | 620, 1102, 1204 |
| BstSFI | CTRYAG | 2 cut(s) | 36, 1419 |
| BstSLI | GKGCMC | 2 cut(s) | 958, 1463 |
| BstV1I | GCAGC | 4 cut(s) | 1346, 1402, 1405, 1433 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1192 |
| BstZ17I | GTATAC | 2 cut(s) | 799, 931 |
| BsuRI | GGCC | 4 cut(s) | 5, 180, 1196, 1461 |
| BtgI | CCRYGG | 1 cut(s) | 175 |
| BtgZI | GCGATG | 2 cut(s) | 155, 1216 |
| BtsCI | GGATG | 3 cut(s) | 196, 1170, 1525 |
| BtsI | GCAGTG | 1 cut(s) | 659 |
| BtsIMutI | CAGTG | 5 cut(s) | 538, 659, 820, 952, 1224 |
| BveI | ACCTGC | 1 cut(s) | 1427 |
| CciI | TCATGA | 1 cut(s) | 1471 |
| CfoI | GCGC | 5 cut(s) | 229, 781, 869, 911, 1096 |
| Cfr10I | RCCGGY | 1 cut(s) | 1502 |
| Cfr13I | GGNCC | 4 cut(s) | 924, 1195, 1459, 1460 |
| Csp6I | GTAC | 2 cut(s) | 886, 1108 |
| CviQI | GTAC | 2 cut(s) | 886, 1108 |
| DdeI | CTNAG | 3 cut(s) | 339, 516, 879 |
| DinI | GGCGCC | 1 cut(s) | 780 |
| DraIII | CACNNNGTG | 1 cut(s) | 533 |
| EaeI | YGGCCR | 2 cut(s) | 3, 178 |
| Eam1104I | CTCTTC | 1 cut(s) | 1310 |
| EarI | CTCTTC | 1 cut(s) | 1310 |
| EciI | GGCGGA | 3 cut(s) | 144, 432, 465 |
| Ecl136II | GAGCTC | 2 cut(s) | 1001, 1046 |
| Eco130I | CCWWGG | 3 cut(s) | 6, 175, 920 |
| Eco24I | GRGCYC | 3 cut(s) | 1003, 1048, 1463 |
| Eco31I | GGTCTC | 1 cut(s) | 1292 |
| Eco47I | GGWCC | 1 cut(s) | 924 |
| Eco53kI | GAGCTC | 2 cut(s) | 1001, 1046 |
| Eco57I | CTGAAG | 1 cut(s) | 1374 |
| Eco88I | CYCGRG | 2 cut(s) | 1425, 1478 |
| EcoICRI | GAGCTC | 2 cut(s) | 1001, 1046 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1459 |
| EcoRII | CCWGG | 2 cut(s) | 620, 1102 |
| EcoT14I | CCWWGG | 3 cut(s) | 6, 175, 920 |
| EcoT38I | GRGCYC | 3 cut(s) | 1003, 1048, 1463 |
| EgeI | GGCGCC | 1 cut(s) | 780 |
| EheI | GGCGCC | 1 cut(s) | 780 |
| ErhI | CCWWGG | 3 cut(s) | 6, 175, 920 |
| Esp3I | CGTCTC | 1 cut(s) | 117 |
| FauI | CCCGC | 2 cut(s) | 1202, 1339 |
| FblI | GTMKAC | 2 cut(s) | 798, 930 |
| Fnu4HI | GCNGC | 6 cut(s) | 1335, 1399, 1402, 1416, 1419, 1422 |
| FokI | GGATG | 3 cut(s) | 183, 1157, 1512 |
| FriOI | GRGCYC | 3 cut(s) | 1003, 1048, 1463 |
| Fsp4HI | GCNGC | 6 cut(s) | 1335, 1399, 1402, 1416, 1419, 1422 |
| FspBI | CTAG | 1 cut(s) | 1250 |
| FspI | TGCGCA | 1 cut(s) | 228 |
| GlaI | GCGC | 5 cut(s) | 228, 780, 868, 910, 1095 |
| GluI | GCNGC | 6 cut(s) | 1335, 1399, 1402, 1416, 1419, 1422 |
| GsaI | CCCAGC | 1 cut(s) | 771 |
| GsuI | CTGGAG | 2 cut(s) | 618, 1086 |
| HaeII | RGCGCY | 1 cut(s) | 782 |
| HaeIII | GGCC | 4 cut(s) | 5, 180, 1196, 1461 |
| HapII | CCGG | 2 cut(s) | 1206, 1503 |
| HhaI | GCGC | 5 cut(s) | 229, 781, 869, 911, 1096 |
| Hin1I | GRCGYC | 1 cut(s) | 779 |
| Hin6I | GCGC | 5 cut(s) | 227, 779, 867, 909, 1094 |
| HinP1I | GCGC | 5 cut(s) | 227, 779, 867, 909, 1094 |
| HpaII | CCGG | 2 cut(s) | 1206, 1503 |
| Hpy166II | GTNNAC | 5 cut(s) | 799, 931, 956, 976, 1393 |
| Hpy188I | TCNGA | 1 cut(s) | 1166 |
| Hpy188III | TCNNGA | 1 cut(s) | 1472 |
| Hpy8I | GTNNAC | 5 cut(s) | 799, 931, 956, 976, 1393 |
| HpyAV | CCTTC | 7 cut(s) | 87, 492, 498, 812, 944, 1286, 1445 |
| HpyCH4III | ACNGT | 5 cut(s) | 111, 1145, 1179, 1228, 1375 |
| HpyCH4V | TGCA | 3 cut(s) | 956, 1259, 1421 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1415, 1421, 1499, 1508 |
| HpyF3I | CTNAG | 3 cut(s) | 339, 516, 879 |
| Hsp92I | GRCGYC | 1 cut(s) | 779 |
| HspAI | GCGC | 5 cut(s) | 227, 779, 867, 909, 1094 |
| KasI | GGCGCC | 1 cut(s) | 778 |
| LmnI | GCTCC | 9 cut(s) | 103, 688, 829, 998, 1006, 1043, 1051, 1153, 1433 |
| Lsp1109I | GCAGC | 4 cut(s) | 1346, 1402, 1405, 1433 |
| LweI | GCATC | 4 cut(s) | 152, 460, 593, 1179 |
| MaeI | CTAG | 1 cut(s) | 1250 |
| MaeIII | GTNAC | 3 cut(s) | 128, 136, 1439 |
| MboII | GAAGA | 8 cut(s) | 1008, 1255, 1318, 1321, 1324, 1327, 1367, 1370 |
| MhlI | GDGCHC | 7 cut(s) | 100, 826, 958, 1003, 1048, 1150, 1463 |
| MlsI | TGGCCA | 2 cut(s) | 5, 180 |
| MluCI | AATT | 1 cut(s) | 14 |
| MluNI | TGGCCA | 2 cut(s) | 5, 180 |
| Mly113I | GGCGCC | 1 cut(s) | 779 |
| Mox20I | TGGCCA | 2 cut(s) | 5, 180 |
| MscI | TGGCCA | 2 cut(s) | 5, 180 |
| MseI | TTAA | 1 cut(s) | 1537 |
| MslI | CAYNNNNRTG | 8 cut(s) | 174, 273, 327, 456, 504, 552, 600, 1235 |
| Msp20I | TGGCCA | 2 cut(s) | 5, 180 |
| MspI | CCGG | 2 cut(s) | 1206, 1503 |
| MspR9I | CCNGG | 3 cut(s) | 622, 1104, 1206 |
| Mva1269I | GAATGC | 2 cut(s) | 1259, 1271 |
| MvaI | CCWGG | 2 cut(s) | 622, 1104 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1415, 1421, 1499, 1508 |
| NarI | GGCGCC | 1 cut(s) | 779 |
| NciI | CCSGG | 1 cut(s) | 1206 |
| NcoI | CCATGG | 1 cut(s) | 175 |
| NlaIV | GGNNCC | 7 cut(s) | 684, 780, 1197, 1329, 1460, 1461, 1501 |
| NmeAIII | GCCGAG | 1 cut(s) | 659 |
| NsbI | TGCGCA | 1 cut(s) | 228 |
| PagI | TCATGA | 1 cut(s) | 1471 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1401 |
| PctI | GAATGC | 2 cut(s) | 1259, 1271 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 695 |
| PkrI | GCNGC | 6 cut(s) | 1336, 1400, 1403, 1417, 1420, 1423 |
| PluTI | GGCGCC | 1 cut(s) | 782 |
| Psp124BI | GAGCTC | 2 cut(s) | 1003, 1048 |
| Psp6I | CCWGG | 2 cut(s) | 620, 1102 |
| PspFI | CCCAGC | 1 cut(s) | 767 |
| PspGI | CCWGG | 2 cut(s) | 620, 1102 |
| PspN4I | GGNNCC | 7 cut(s) | 684, 780, 1197, 1329, 1460, 1461, 1501 |
| PspOMI | GGGCCC | 1 cut(s) | 1459 |
| PspPI | GGNCC | 4 cut(s) | 924, 1195, 1459, 1460 |
| PstI | CTGCAG | 1 cut(s) | 1423 |
| RsaI | GTAC | 2 cut(s) | 887, 1109 |
| RsaNI | GTAC | 2 cut(s) | 886, 1108 |
| RseI | CAYNNNNRTG | 8 cut(s) | 174, 273, 327, 456, 504, 552, 600, 1235 |
| SacI | GAGCTC | 2 cut(s) | 1003, 1048 |
| SaqAI | TTAA | 1 cut(s) | 1537 |
| SatI | GCNGC | 6 cut(s) | 1335, 1399, 1402, 1416, 1419, 1422 |
| Sau96I | GGNCC | 4 cut(s) | 924, 1195, 1459, 1460 |
| ScrFI | CCNGG | 3 cut(s) | 622, 1104, 1206 |
| SduI | GDGCHC | 7 cut(s) | 100, 826, 958, 1003, 1048, 1150, 1463 |
| SfaNI | GCATC | 4 cut(s) | 152, 460, 593, 1179 |
| SfcI | CTRYAG | 2 cut(s) | 36, 1419 |
| SfoI | GGCGCC | 1 cut(s) | 780 |
| SinI | GGWCC | 1 cut(s) | 924 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 174, 273, 327, 456, 504, 552, 600, 1235 |
| Sse9I | AATT | 1 cut(s) | 14 |
| SspDI | GGCGCC | 1 cut(s) | 778 |
| SspMI | CTAG | 1 cut(s) | 1250 |
| SstI | GAGCTC | 2 cut(s) | 1003, 1048 |
| StyD4I | CCNGG | 3 cut(s) | 620, 1102, 1204 |
| StyI | CCWWGG | 3 cut(s) | 6, 175, 920 |
| TaaI | ACNGT | 5 cut(s) | 111, 1145, 1179, 1228, 1375 |
| TaqII | GACCGA | 1 cut(s) | 1274 |
| TasI | AATT | 1 cut(s) | 14 |
| TauI | GCSGC | 2 cut(s) | 1401, 1404 |
| Tru1I | TTAA | 1 cut(s) | 1537 |
| Tru9I | TTAA | 1 cut(s) | 1537 |
| TscAI | CASTG | 5 cut(s) | 538, 666, 820, 952, 1231 |
| TseI | GCWGC | 4 cut(s) | 1334, 1415, 1418, 1421 |
| TspDTI | ATGAA | 4 cut(s) | 1008, 1203, 1383, 1488 |
| TspGWI | ACGGA | 3 cut(s) | 784, 916, 961 |
| TspRI | CASTG | 5 cut(s) | 538, 666, 820, 952, 1231 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 695 |
| VneI | GTGCAC | 1 cut(s) | 954 |
| VpaK11BI | GGWCC | 1 cut(s) | 924 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1164 |
| XapI | RAATTY | 1 cut(s) | 14 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 618 |
| XmiI | GTMKAC | 2 cut(s) | 798, 930 |
| XspI | CTAG | 1 cut(s) | 1250 |