RLG00000010609

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000458
Physical Location & Seq
Forward (+)
2944175 .. 2945796
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010609

Sequence Viewer

Length: 540 bp
ATGGGTTGCTGCAAAGTTGCAACGTATGTTGTTCTGGTCCTGAAAGCACAACCCCAAAGATCAAATGGCTCAGAACCTGATCCTAACAGCACGTGTATTGCACGCACCGTTGAAGACCCCAGGCTATATAGCGGAAGGGCCAGAGGCGAGGCCGAAGTTGGGGCTGGGCCAGAGGCCAATGGAGAGGATGGCGGGGTGGGATTGGAGCGCGTGGGCCTGGGAGGCGGAGAAGCCATGGACGGCGCGTGTGCATGTGTAGAGGAGGTTGGTAAGAATAATGGGGTTGGTGAGTTTGGATCTAATGGTGAGGGCATACACATCCTTGGGCACCCACTTTTTTACAATCCGCTGGCACCTTCACCCCAAATCTCGACGCATCACCATAAAGACCACCACACGGTTTACATCGCCACCTTCGTCTCGCTGGGCGGTGTTTTCTTCCTCGCATTCCTTGCACTTGATCTATTCTGCTTGGCTAAGAAGAAGAAGAAGAAAAGGGCAGCATATGCTCCTCCAGCTGCTCCTTACGCTACTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

18.69

Weight (kDa)

6.64

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 327, 352
AccII CGCG 2 cut(s) 210, 245
AciI CCGC 5 cut(s) 132, 192, 225, 347, 429
AclWI GGATC 2 cut(s) 74, 304
AcvI CACGTG 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 159, 397
AflIII ACRYGT 1 cut(s) 92
AgsI TTSAA 1 cut(s) 113
AjnI CCWGG 2 cut(s) 119, 216
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 2 cut(s) 74, 304
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 5 cut(s) 138, 150, 167, 174, 214
ApeKI GCWGC 3 cut(s) 9, 500, 518
AspLEI GCGC 2 cut(s) 210, 245
AspS9I GGNCC 4 cut(s) 37, 138, 167, 214
AsuHPI GGTGA 4 cut(s) 299, 317, 351, 371
AvaII GGWCC 1 cut(s) 37
BaeGI GKGCMC 1 cut(s) 330
BanI GGYRCC 2 cut(s) 327, 352
BbrPI CACGTG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 505, 512
BccI CCATC 1 cut(s) 182
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 2 cut(s) 121, 218
BcoDI GTCTC 1 cut(s) 424
BglI GCCNNNNNGGC 1 cut(s) 222
BisI GCNGC 3 cut(s) 10, 501, 519
BlsI GCNGC 3 cut(s) 11, 502, 520
Bme1390I CCNGG 2 cut(s) 121, 218
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 37, 138, 167, 214
BmiI GGNNCC 2 cut(s) 329, 354
BmrFI CCNGG 2 cut(s) 121, 218
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 498
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 4 cut(s) 119, 217, 234, 322
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 397
Bse1I ACTGG 1 cut(s) 538
BseBI CCWGG 2 cut(s) 121, 218
BseDI CCNNGG 4 cut(s) 119, 217, 234, 322
BseGI GGATG 2 cut(s) 193, 318
BseLI CCNNNNNNNGG 2 cut(s) 159, 397
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 538
BseRI GAGGAG 2 cut(s) 275, 501
BseSI GKGCMC 1 cut(s) 330
BseXI GCAGC 2 cut(s) 505, 512
BseYI CCCAGC 2 cut(s) 164, 424
Bsh1236I CGCG 2 cut(s) 210, 245
BshFI GGCC 5 cut(s) 140, 152, 169, 176, 216
BshNI GGYRCC 2 cut(s) 327, 352
BslI CCNNNNNNNGG 2 cut(s) 159, 397
BsmAI GTCTC 1 cut(s) 424
BsmBI CGTCTC 1 cut(s) 424
BsmI GAATGC 1 cut(s) 446
BsnI GGCC 5 cut(s) 140, 152, 169, 176, 216
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 59, 79, 296, 460
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 5 cut(s) 132, 192, 225, 347, 429
BspANI GGCC 5 cut(s) 140, 152, 169, 176, 216
BspCNI CTCAG 1 cut(s) 83
BspFNI CGCG 2 cut(s) 210, 245
BspLI GGNNCC 2 cut(s) 329, 354
BspPI GGATC 2 cut(s) 74, 304
BspT107I GGYRCC 2 cut(s) 327, 352
BsrI ACTGG 1 cut(s) 538
BssECI CCNNGG 4 cut(s) 119, 217, 234, 322
BssMI GATC 4 cut(s) 59, 79, 296, 460
BssT1I CCWWGG 2 cut(s) 234, 322
Bst2UI CCWGG 2 cut(s) 121, 218
Bst4CI ACNGT 2 cut(s) 109, 400
BstAPI GCANNNNNTGC 2 cut(s) 452, 506
BstBAI YACGTR 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 103, 351
BstDEI CTNAG 2 cut(s) 70, 477
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 2 cut(s) 193, 318
BstFNI CGCG 2 cut(s) 210, 245
BstHHI GCGC 2 cut(s) 210, 245
BstKTI GATC 4 cut(s) 62, 82, 299, 463
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 4 cut(s) 59, 79, 296, 460
BstMWI GCNNNNNNNGC 5 cut(s) 222, 452, 506, 515, 527
BstNI CCWGG 2 cut(s) 121, 218
BstNSI RCATGY 1 cut(s) 255
BstSCI CCNGG 2 cut(s) 119, 216
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 2 cut(s) 210, 245
BstV1I GCAGC 2 cut(s) 505, 512
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 1 cut(s) 296
BstYI RGATCY 1 cut(s) 296
BsuRI GGCC 5 cut(s) 140, 152, 169, 176, 216
BtgI CCRYGG 1 cut(s) 234
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 2 cut(s) 193, 318
Cac8I GCNNGC 2 cut(s) 103, 351
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 210, 245
Cfr13I GGNCC 4 cut(s) 37, 138, 167, 214
CseI GACGC 1 cut(s) 382
CviAII CATG 2 cut(s) 235, 252
DdeI CTNAG 2 cut(s) 70, 477
DpnI GATC 4 cut(s) 61, 81, 298, 462
DpnII GATC 4 cut(s) 59, 79, 296, 460
EciI GGCGGA 1 cut(s) 240
Eco130I CCWWGG 2 cut(s) 234, 322
Eco47I GGWCC 1 cut(s) 37
Eco72I CACGTG 1 cut(s) 93
EcoRII CCWGG 2 cut(s) 119, 216
EcoT14I CCWWGG 2 cut(s) 234, 322
ErhI CCWWGG 2 cut(s) 234, 322
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 2 cut(s) 238, 255
FaiI YATR 9 cut(s) 27, 127, 129, 236, 253, 314, 384, 505, 507
FatI CATG 2 cut(s) 234, 251
FauI CCCGC 1 cut(s) 185
FauNDI CATATG 1 cut(s) 505
Fnu4HI GCNGC 3 cut(s) 10, 501, 519
FokI GGATG 2 cut(s) 200, 305
Fsp4HI GCNGC 3 cut(s) 10, 501, 519
GlaI GCGC 2 cut(s) 209, 244
GluI GCNGC 3 cut(s) 10, 501, 519
GsaI CCCAGC 2 cut(s) 168, 428
GsuI CTGGAG 1 cut(s) 498
HaeIII GGCC 5 cut(s) 140, 152, 169, 176, 216
HgaI GACGC 1 cut(s) 382
HhaI GCGC 2 cut(s) 210, 245
Hin1II CATG 2 cut(s) 238, 255
Hin6I GCGC 2 cut(s) 208, 243
HinP1I GCGC 2 cut(s) 208, 243
HphI GGTGA 4 cut(s) 299, 317, 351, 371
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 1 cut(s) 73
Hpy188III TCNNGA 2 cut(s) 40, 370
Hpy8I GTNNAC 1 cut(s) 403
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 3 cut(s) 129, 366, 424
HpyCH4III ACNGT 2 cut(s) 109, 400
HpyCH4IV ACGT 2 cut(s) 23, 92
HpyCH4V TGCA 5 cut(s) 12, 20, 101, 251, 455
HpyF10VI GCNNNNNNNGC 5 cut(s) 222, 452, 506, 515, 527
HpyF3I CTNAG 2 cut(s) 70, 477
HpySE526I ACGT 2 cut(s) 23, 92
Hsp92II CATG 2 cut(s) 238, 255
HspAI GCGC 2 cut(s) 208, 243
Kzo9I GATC 4 cut(s) 59, 79, 296, 460
LmnI GCTCC 3 cut(s) 205, 514, 526
Lsp1109I GCAGC 2 cut(s) 505, 512
LweI GCATC 1 cut(s) 385
MaeII ACGT 2 cut(s) 23, 92
MalI GATC 4 cut(s) 61, 81, 298, 462
MboI GATC 4 cut(s) 59, 79, 296, 460
MboII GAAGA 6 cut(s) 125, 430, 493, 496, 499, 502
MflI RGATCY 1 cut(s) 296
MhlI GDGCHC 1 cut(s) 330
MseI TTAA 1 cut(s) 538
MspA1I CMGCKG 2 cut(s) 349, 518
MspR9I CCNGG 2 cut(s) 121, 218
Mva1269I GAATGC 1 cut(s) 446
MvaI CCWGG 2 cut(s) 121, 218
MvnI CGCG 2 cut(s) 210, 245
MwoI GCNNNNNNNGC 5 cut(s) 222, 452, 506, 515, 527
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 505
NdeII GATC 4 cut(s) 59, 79, 296, 460
NlaIII CATG 2 cut(s) 238, 255
NlaIV GGNNCC 2 cut(s) 329, 354
NspI RCATGY 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 414
PctI GAATGC 1 cut(s) 446
PkrI GCNGC 3 cut(s) 11, 502, 520
PmaCI CACGTG 1 cut(s) 93
PmlI CACGTG 1 cut(s) 93
Ppu21I YACGTR 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 119, 216
PspCI CACGTG 1 cut(s) 93
PspFI CCCAGC 2 cut(s) 164, 424
PspGI CCWGG 2 cut(s) 119, 216
PspN4I GGNNCC 2 cut(s) 329, 354
PspPI GGNCC 4 cut(s) 37, 138, 167, 214
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 296
PvuII CAGCTG 1 cut(s) 518
SaqAI TTAA 1 cut(s) 538
SatI GCNGC 3 cut(s) 10, 501, 519
Sau3AI GATC 4 cut(s) 59, 79, 296, 460
Sau96I GGNCC 4 cut(s) 37, 138, 167, 214
ScrFI CCNGG 2 cut(s) 121, 218
SduI GDGCHC 1 cut(s) 330
SetI ASST 7 cut(s) 26, 79, 95, 267, 358, 416, 520
SfaNI GCATC 1 cut(s) 385
SinI GGWCC 1 cut(s) 37
SsiI CCGC 5 cut(s) 132, 192, 225, 347, 429
StyD4I CCNGG 2 cut(s) 119, 216
StyI CCWWGG 2 cut(s) 234, 322
TaaI ACNGT 2 cut(s) 109, 400
TaiI ACGT 2 cut(s) 26, 95
TaqI TCGA 1 cut(s) 371
Tru1I TTAA 1 cut(s) 538
Tru9I TTAA 1 cut(s) 538
TseI GCWGC 3 cut(s) 9, 500, 518
VpaK11BI GGWCC 1 cut(s) 37
XceI RCATGY 1 cut(s) 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.