Rorug06G0068400

Domain of unknown function (DUF3475)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000458
Physical Location & Seq
Reverse (-)
9128941 .. 9129327
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0068400.1

Sequence Viewer

Length: 387 bp
ATGGCTGTCAATCCAAGTTCTGAAAAATTTGGTGCTCTAATTCTTCTCATCCTGTTTAGTTTTAATCTTTTGGCAACCCAAGCTCGACCAACAATCAGTTCCAAATTGGCTACAGACTCTGAGGCGCTAAGCATTGGTGGCGGATATGTTGGTACTGGAGGACAGTACTACAACTCTAATCCGAGTCCATTGTCACTGATGAATAAGGACTTGGAGACAAGCATTGATATAGCACATCCAAGACAGGCAAATGGTGGCATAGCACATTCAATCCTAGGACAACAAAGCCGTTATCTGAGCCCATCAATAATTGGGAGGATTAAGGAGTCAGGACCGAGCCCTGGTGGTGGACACGGTGGTGGTGGTGGAGGTGGTGGTGGACATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 ko03040 ko05164 map03013 map03015 map03040 map05164
Pfam Domains
Protein Families
DUF3475 DUF668

Protein Analysis

128

Amino Acids

12.93

Weight (kDa)

8.11

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 26
AfaI GTAC 2 cut(s) 154, 167
AfiI CCNNNNNNNGG 2 cut(s) 341, 347
AgsI TTSAA 1 cut(s) 270
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 4 cut(s) 82, 114, 194, 226
AleI CACNNNNGTG 1 cut(s) 357
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 1 cut(s) 209
AlwNI CAGNNNCTG 1 cut(s) 119
ApoI RAATTY 1 cut(s) 26
AspA2I CCTAGG 1 cut(s) 274
AspLEI GCGC 1 cut(s) 127
AspS9I GGNCC 1 cut(s) 332
AvaII GGWCC 1 cut(s) 332
AvrII CCTAGG 1 cut(s) 274
BanII GRGCYC 2 cut(s) 302, 341
Bbv12I GWGCWC 1 cut(s) 37
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 209
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 111
BfoI RGCGCY 1 cut(s) 128
BlnI CCTAGG 1 cut(s) 274
BlpI GCTNAGC 1 cut(s) 128
BmcAI AGTACT 1 cut(s) 167
Bme1390I CCNGG 1 cut(s) 342
Bme18I GGWCC 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 332
BmrFI CCNGG 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 128
BsaJI CCNNGG 2 cut(s) 274, 340
Bsc4I CCNNNNNNNGG 2 cut(s) 341, 347
Bse1I ACTGG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 274, 340
BseGI GGATG 2 cut(s) 48, 235
BseLI CCNNNNNNNGG 2 cut(s) 341, 347
BseMII CTCAG 2 cut(s) 111, 287
BseNI ACTGG 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 37
BslI CCNNNNNNNGG 2 cut(s) 341, 347
BsmAI GTCTC 1 cut(s) 209
Bsp1286I GDGCHC 3 cut(s) 37, 302, 341
Bsp1720I GCTNAGC 1 cut(s) 128
BspACI CCGC 1 cut(s) 141
BspCNI CTCAG 2 cut(s) 112, 288
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 2 cut(s) 274, 340
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 165, 356
BstDEI CTNAG 3 cut(s) 120, 128, 296
BstF5I GGATG 2 cut(s) 48, 235
BstH2I RGCGCY 1 cut(s) 128
BstHHI GCGC 1 cut(s) 127
BstMAI GTCTC 1 cut(s) 209
BstMWI GCNNNNNNNGC 2 cut(s) 80, 138
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 48, 235
BtsIMutI CAGTG 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 332
Csp6I GTAC 2 cut(s) 153, 166
CviJI RGCY 6 cut(s) 5, 83, 110, 288, 300, 339
CviKI_1 RGCY 6 cut(s) 5, 83, 110, 288, 300, 339
CviQI GTAC 2 cut(s) 153, 166
DdeI CTNAG 3 cut(s) 120, 128, 296
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 2 cut(s) 302, 341
Eco47I GGWCC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 2 cut(s) 302, 341
ErhI CCWWGG 1 cut(s) 274
FaiI YATR 3 cut(s) 147, 230, 260
FokI GGATG 2 cut(s) 35, 222
FriOI GRGCYC 2 cut(s) 302, 341
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 177
HaeII RGCGCY 1 cut(s) 128
HhaI GCGC 1 cut(s) 127
Hin6I GCGC 1 cut(s) 125
HinP1I GCGC 1 cut(s) 125
HinfI GANTC 3 cut(s) 116, 184, 326
Hpy166II GTNNAC 2 cut(s) 350, 380
Hpy188I TCNGA 4 cut(s) 22, 121, 183, 297
Hpy188III TCNNGA 1 cut(s) 330
Hpy8I GTNNAC 2 cut(s) 350, 380
HpyCH4III ACNGT 2 cut(s) 165, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 138
HpyF3I CTNAG 3 cut(s) 120, 128, 296
HspAI GCGC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 65, 141, 230, 315, 327, 354
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 192
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 3 cut(s) 37, 302, 341
MluCI AATT 4 cut(s) 26, 39, 104, 309
MlyI GAGTC 3 cut(s) 110, 193, 335
MnlI CCTC 4 cut(s) 115, 152, 309, 362
MseI TTAA 3 cut(s) 63, 321, 385
MslI CAYNNNNRTG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 80, 138
NmuCI GTSAC 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 357
PleI GAGTC 3 cut(s) 110, 192, 334
PpsI GAGTC 3 cut(s) 110, 192, 334
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspPI GGNCC 1 cut(s) 332
PstNI CAGNNNCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 154, 167
RsaNI GTAC 2 cut(s) 153, 166
RseI CAYNNNNRTG 1 cut(s) 357
SaqAI TTAA 3 cut(s) 63, 321, 385
Sau96I GGNCC 1 cut(s) 332
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 3 cut(s) 110, 193, 335
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 3 cut(s) 37, 302, 341
SetI ASST 2 cut(s) 85, 373
SfcI CTRYAG 1 cut(s) 111
SinI GGWCC 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 4 cut(s) 26, 39, 104, 309
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 275
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 165, 356
TaqI TCGA 1 cut(s) 85
TaqII GACCGA 1 cut(s) 349
TasI AATT 4 cut(s) 26, 39, 104, 309
TatI WGTACW 1 cut(s) 165
Tru1I TTAA 3 cut(s) 63, 321, 385
Tru9I TTAA 3 cut(s) 63, 321, 385
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 192
Tsp45I GTSAC 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 215
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 332
XapI RAATTY 1 cut(s) 26
XmaJI CCTAGG 1 cut(s) 274
XspI CTAG 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.