pycom10g03190

Domain of unknown function (DUF3475)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
3539728 .. 3539979
252 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g03190.1

Sequence Viewer

Length: 252 bp
ATGCTTCGATATGTAAGTAAGAGAAAACTGACACCGGGGATTAGTAAGAGTCAAGAATTTGACACCTCAAGGACCAGGTTCAGCAAGCATAACCGGCTGAGCAAGAGTAGCAACCACTCCCCGACAAGTGAACGTAGGAAGGACCCATTTCCAATCAGGAGGCCATCCTCCGTTCCTATCATTGACTTTGATTTCGACCGGAGCAAAGCACTGGATGTGATCGATCGGGTGGACACAATTCGAAGTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.71

Weight (kDa)

10.9

Isoelectric Point (pI)

66.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 56
AjnI CCWGG 1 cut(s) 74
AoxI GGCC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 56
ArsI GACNNNNNNTTYG 2 cut(s) 176, 208
AspS9I GGNCC 2 cut(s) 72, 142
AsuC2I CCSGG 1 cut(s) 36
AsuII TTCGAA 1 cut(s) 241
AvaII GGWCC 2 cut(s) 72, 142
BccI CCATC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 76
BcnI CCSGG 1 cut(s) 36
BlpI GCTNAGC 1 cut(s) 98
Bme1390I CCNGG 2 cut(s) 36, 76
Bme18I GGWCC 2 cut(s) 72, 142
BmgT120I GGNCC 2 cut(s) 72, 142
BmiI GGNNCC 1 cut(s) 144
BmrFI CCNGG 2 cut(s) 36, 76
Bpu1102I GCTNAGC 1 cut(s) 98
Bpu14I TTCGAA 1 cut(s) 241
BpuEI CTTGAG 1 cut(s) 52
BpuMI CCSGG 1 cut(s) 36
Bsa29I ATCGAT 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 35
BsaWI WCCGGW 1 cut(s) 198
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 76
BseCI ATCGAT 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 164, 220
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 1 cut(s) 216
Bsh1285I CGRYCG 2 cut(s) 199, 226
BshFI GGCC 1 cut(s) 163
BshVI ATCGAT 1 cut(s) 222
BsiEI CGRYCG 2 cut(s) 199, 226
BsiSI CCGG 3 cut(s) 35, 94, 199
BsnI GGCC 1 cut(s) 163
Bsp119I TTCGAA 1 cut(s) 241
Bsp143I GATC 2 cut(s) 219, 223
Bsp1720I GCTNAGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 163
BspCNI CTCAG 1 cut(s) 90
BspDI ATCGAT 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 144
BspT104I TTCGAA 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 216
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 219, 223
Bst2UI CCWGG 1 cut(s) 76
BstBI TTCGAA 1 cut(s) 241
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 164, 220
BstKTI GATC 2 cut(s) 222, 226
BstMBI GATC 2 cut(s) 219, 223
BstMCI CGRYCG 2 cut(s) 199, 226
BstMWI GCNNNNNNNGC 2 cut(s) 94, 108
BstNI CCWGG 1 cut(s) 76
BstSCI CCNGG 2 cut(s) 34, 74
Bsu15I ATCGAT 1 cut(s) 222
BsuRI GGCC 1 cut(s) 163
BsuTUI ATCGAT 1 cut(s) 222
BtsCI GGATG 2 cut(s) 164, 220
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 86
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 72, 142
ClaI ATCGAT 1 cut(s) 222
CsiI ACCWGGT 1 cut(s) 74
CviJI RGCY 2 cut(s) 97, 163
CviKI_1 RGCY 2 cut(s) 97, 163
DdeI CTNAG 1 cut(s) 98
DpnI GATC 2 cut(s) 221, 225
DpnII GATC 2 cut(s) 219, 223
Eco47I GGWCC 2 cut(s) 72, 142
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 1 cut(s) 74
FaiI YATR 2 cut(s) 12, 90
FokI GGATG 2 cut(s) 151, 227
HaeIII GGCC 1 cut(s) 163
HapII CCGG 3 cut(s) 35, 94, 199
HinfI GANTC 1 cut(s) 49
HpaII CCGG 3 cut(s) 35, 94, 199
Hpy166II GTNNAC 2 cut(s) 131, 232
Hpy188III TCNNGA 2 cut(s) 53, 157
Hpy8I GTNNAC 2 cut(s) 131, 232
HpyAV CCTTC 1 cut(s) 133
HpyCH4IV ACGT 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 2 cut(s) 94, 108
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 1 cut(s) 133
Kzo9I GATC 2 cut(s) 219, 223
LmnI GCTCC 1 cut(s) 201
LpnPI CCDG 7 cut(s) 48, 61, 88, 107, 142, 197, 212
MabI ACCWGGT 1 cut(s) 74
MaeII ACGT 1 cut(s) 133
MalI GATC 2 cut(s) 221, 225
MboI GATC 2 cut(s) 219, 223
MluCI AATT 2 cut(s) 56, 237
MlyI GAGTC 1 cut(s) 58
MnlI CCTC 3 cut(s) 76, 153, 178
MspI CCGG 3 cut(s) 35, 94, 199
MspR9I CCNGG 2 cut(s) 36, 76
MvaI CCWGG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 94, 108
NciI CCSGG 1 cut(s) 36
NdeII GATC 2 cut(s) 219, 223
NlaIV GGNNCC 1 cut(s) 144
NspV TTCGAA 1 cut(s) 241
Ple19I CGATCG 1 cut(s) 226
PleI GAGTC 1 cut(s) 57
PpsI GAGTC 1 cut(s) 57
PpuMI RGGWCCY 1 cut(s) 142
Psp5II RGGWCCY 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 74
PspGI CCWGG 1 cut(s) 74
PspN4I GGNNCC 1 cut(s) 144
PspPI GGNCC 2 cut(s) 72, 142
PspPPI RGGWCCY 1 cut(s) 142
PvuI CGATCG 1 cut(s) 226
Sau3AI GATC 2 cut(s) 219, 223
Sau96I GGNCC 2 cut(s) 72, 142
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 2 cut(s) 36, 76
SetI ASST 3 cut(s) 68, 80, 136
SexAI ACCWGGT 1 cut(s) 74
SfuI TTCGAA 1 cut(s) 241
SinI GGWCC 2 cut(s) 72, 142
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 56, 237
StyD4I CCNGG 2 cut(s) 34, 74
TaiI ACGT 1 cut(s) 136
TaqI TCGA 4 cut(s) 7, 195, 222, 241
TasI AATT 2 cut(s) 56, 237
TscAI CASTG 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 216
VpaK11BI GGWCC 2 cut(s) 72, 142
XapI RAATTY 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.