FvH4_5g36140

proline-rich receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000458
Physical Location & Seq
Reverse (-)
26501559 .. 26503244
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36140.t1

Sequence Viewer

Length: 1686 bp
ATGGCCGCCTATCCGTACTATTCCCCACCGCCACCTTCCCCGCCACCGCCATCACAACCACCACCACCTTCATTGTATACTTACTACTCACCACCCCCATGTAACGAAACTACTAAAACACTTCCTACTCCACCCCCACCACCACCACCACCACCATCTTCAGCACCACCACCACCTACGCTACCGCCACCCTCACATCCACACCATAAACATCAACCACCACCTCCACCACCCCCACCCCTGTCACCAGCCTCACACCCACCCCAAAAACATCCACCACCACCTTTATCATCACCACCACCACCACCCCCGTCACCACCTACCCTACCGCCACCCTCACACCCACACCATAAACATCCACCACAAAACCCACCACATTCACCACCACCACCTGTAGTGCCACCATCGTCACCACCACCTGTGACCCCTACATCACCTCCACCATCTCATCCACCACCTTCAACATCACCTTCACCACCAATTATATCGCCACCTTCACACCCACCACCTACATCACCACCACCATCACATCCACCACCTTCACTTCAACCGCCACCATTAAGTCCACCCCCTTCACCATTACCACCTGCACTAACCCCACCTCCACCACCTTCACTGCCGCCTCCATCAAGTCCACCACCTCCAGTTTTGCCACCACCAAATCCCCCACCTTCATCGCCACCACCATTAAGTCCACCACTTACACCATCGCCACCTACTCATCCACGTCCTGCAGTTCCACCACCATCACATCCACCACTGTCGCCGTCACCACCACCACCTACACAACCACTATCATACACACCACCACCGTCCTCGTTGCCGCCATACTCACCCCTATTTCCTCCAATACTCACCCCAGAGCCACCAATTTGCCACTGTGTATGCCCAGCACCAAGTCCATATGATAATTCAATTGCCCCATCATTGCCAAGTTCACCATCTCATAGCCATCGCACTGCTTATGTTGCCGGTTTTGTCTCTCTTGGTGGATTGTTCTTTCTTGCATTTCTTGCAGTTGGTCTCTTTTGCTTGCGGAAGAAGAAGAAAAAGTCAAGGGCGGCATACGGAGACCAAGGTGTTTCTCATGCAGAGGAGCATGGAGAAGTTCGTACCTTGCAGAGCATCCCCGCAGCTAACCAGAGTGTAGCTGTCAACATAGATAATCAAAATCCGAATGTTGAACCCAAATCTTATGGAGGTGGTGATGAGGAAGCACAAGAAGATGATCCAAATAAAAGTCCCAGTCGTCATAAACGTCATATTCGACGTCGTACTAAAAGACAAGGTAAAAGAGACTCCAATCATGGTGACAACATAATTGCTGCAATTGGTGCTGGTTCAAATGAGGAATTAGAATCCGAAGACGATGATGAAGAATCAGATCAATCTAAAGATTCAGATAAAAGTTCTCGTCGCCGGCGACGTGGTTCCAATAGTCGCACCAAAAAACGAGAGCCTGAAAGAAATCAGAATCGTGATCGTAATGCTGAACAAAGTGTGTCTGTCACAATTGATGATGATGAAGATGATCCAGATGTGGAAGTGGAACTAGAATCACAAGAAGATGATGATAAATCAAATGGTTCTGGTAAAGATTCTCGTCGTCGCAATAAACGTGAGTCTGGTAGCCGTGCGAGGGGAAACAAAAGCAAAGTGCGTCCCACGTCCAACCGTGACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

562

Amino Acids

59.84

Weight (kDa)

8.46

Isoelectric Point (pI)

117.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000458)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G34320 AT1G34320
fragaria_vesca FvH4_2g12340 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_2g12350 FvH4_5g36070 FvH4_5g36100 FvH4_5g36130 FvH4_5g36140
malus_domestica MD05G1039900.v1.1 MD10G1045400.v1.1 MD10G1045600.v1.1 MD10G1045700.v1.1 MD10G1045800.v1.1 MD12G1057900.v1.1
prunus_persica Prupe.1G525500_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052300_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1 Prupe.8G052600_v2.0.a1
pyrus_communis pycom05g03250 pycom10g03180 pycom10g03190 pycom15g33960
rosa_chinensis RchiOBHm_Chr3g0484671 RchiOBHm_Chr6g0272351 RchiOBHm_Chr6g0272361 RchiOBHm_Chr7g0237881
rosa_laevigata RLG00000000952 RLG00000000960 RLG00000001025 RLG00000008689 RLG00000010609 RLG00000013679 RLG00000013680
rosa_multiflora Rmu_sc0001339.1_g000015 Rmu_sc0002877.1_g000020 Rmu_sc0009379.1_g000003 Rmu_ssc0000199.1_g000001 Rmu_ssc0000321.1_g000001
rosa_roxburghii Rroxscaffold_1G00039160 Rroxscaffold_3G00223500 Rroxscaffold_3G00223670 Rroxscaffold_7G00196370 Rroxscaffold_7G00196380
rosa_rugosa Rorug06G0068200 Rorug06G0068300 Rorug06G0068400 Rorug07G0302100 Rorug07G0308600 Rorug07G0309200.1
rosa_samantha Rh3AG263300 Rh3DG292000 Rh6AG113700 Rh6AG184400 Rh6AG184500 Rh6BG187800 Rh6BG187900 Rh6CG185900 Rh6DG177600 Rh6DG177700 Rh7AG458500 Rh7AG464200 Rh7AG464500 Rh7BG429200 Rh7BG434200 Rh7CG476400 Rh7CG481600 Rh7CG482700 Rh7DG445700 Rh7DG450300 Rh7DG451400
rosa_wichuraiana Rw0G019450 Rw6G015900 Rw6G015910 Rw6G015940 Rw6G015950 Rw7G037980 Rw7G038410 Rw7G038470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
AatII GACGTC 1 cut(s) 1273
Acc36I ACCTGC 1 cut(s) 595
AccI GTMKAC 1 cut(s) 77
AclWI GGATC 2 cut(s) 1223, 1526
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 1270
AfaI GTAC 3 cut(s) 17, 1114, 1276
AfiI CCNNNNNNNGG 1 cut(s) 1639
AgsI TTSAA 5 cut(s) 462, 548, 915, 1184, 1344
AjiI CACGTC 3 cut(s) 728, 1427, 1668
AluBI AGCT 2 cut(s) 1136, 1151
AluI AGCT 2 cut(s) 1136, 1151
Alw26I GTCTC 4 cut(s) 985, 1028, 1065, 1290
AlwI GGATC 2 cut(s) 1223, 1526
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 1133, 1325
BbsI GAAGAC 1 cut(s) 1371
BbvI GCAGC 2 cut(s) 1145, 1312
BceAI ACGGC 2 cut(s) 751, 1617
BcoDI GTCTC 4 cut(s) 985, 1028, 1065, 1290
BfaI CTAG 1 cut(s) 1553
BfmI CTRYAG 2 cut(s) 393, 732
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 6 cut(s) 6, 620, 824, 1062, 1134, 1326
BlsI GCNGC 6 cut(s) 7, 621, 825, 1063, 1135, 1327
BmgBI CACGTC 3 cut(s) 728, 1427, 1668
BmiI GGNNCC 1 cut(s) 1432
BmrI ACTGGG 1 cut(s) 1239
BmsI GCATC 1 cut(s) 1134
BmuI ACTGGG 1 cut(s) 1239
BpiI GAAGAC 1 cut(s) 1371
BpmI CTGGAG 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 1270
BsaI GGTCTC 2 cut(s) 1028, 1065
BsaJI CCNNGG 1 cut(s) 1075
BsaXI ACNNNNNCTCC 4 cut(s) 421, 451, 586, 616
Bsc4I CCNNNNNNNGG 1 cut(s) 1639
Bse118I RCCGGY 2 cut(s) 971, 1419
Bse1I ACTGG 2 cut(s) 644, 1245
Bse3DI GCAATG 1 cut(s) 926
BseDI CCNNGG 1 cut(s) 1075
BseGI GGATG 8 cut(s) 196, 271, 355, 448, 529, 721, 751, 1125
BseLI CCNNNNNNNGG 1 cut(s) 1639
BseMI GCAATG 1 cut(s) 926
BseNI ACTGG 2 cut(s) 644, 1245
BseRI GAGGAG 1 cut(s) 1109
BseXI GCAGC 2 cut(s) 1145, 1312
BseYI CCCAGC 1 cut(s) 889
BsgI GTGCAG 1 cut(s) 573
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 972, 1420
BslFI GGGAC 2 cut(s) 1227, 1647
BslI CCNNNNNNNGG 1 cut(s) 1639
BsmAI GTCTC 4 cut(s) 985, 1028, 1065, 1290
BsmFI GGGAC 2 cut(s) 1227, 1647
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 1028, 1065
Bsp143I GATC 4 cut(s) 1228, 1384, 1480, 1531
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 1432
BspMAI CTGCAG 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 595
BspPI GGATC 2 cut(s) 1223, 1526
BspTNI GGTCTC 2 cut(s) 1028, 1065
BsrDI GCAATG 1 cut(s) 926
BsrFI RCCGGY 2 cut(s) 971, 1419
BsrI ACTGG 2 cut(s) 644, 1245
BssAI RCCGGY 2 cut(s) 971, 1419
BssECI CCNNGG 1 cut(s) 1075
BssMI GATC 4 cut(s) 1228, 1384, 1480, 1531
BssNAI GTATAC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 1270
BssT1I CCWWGG 1 cut(s) 1075
Bst1107I GTATAC 1 cut(s) 78
Bst4CI ACNGT 4 cut(s) 762, 813, 881, 1676
BstACI GRCGYC 1 cut(s) 1270
BstAPI GCANNNNNTGC 2 cut(s) 1013, 1334
BstC8I GCNNGC 2 cut(s) 1034, 1421
BstF5I GGATG 8 cut(s) 196, 271, 355, 448, 529, 721, 751, 1125
BstKTI GATC 4 cut(s) 1231, 1387, 1483, 1534
BstMAI GTCTC 4 cut(s) 985, 1028, 1065, 1290
BstMBI GATC 4 cut(s) 1228, 1384, 1480, 1531
BstMWI GCNNNNNNNGC 3 cut(s) 968, 1013, 1334
BstSFI CTRYAG 2 cut(s) 393, 732
BstV1I GCAGC 2 cut(s) 1145, 1312
BstV2I GAAGAC 1 cut(s) 1371
BstZ17I GTATAC 1 cut(s) 78
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 3 cut(s) 660, 693, 938
BtrI CACGTC 3 cut(s) 728, 1427, 1668
BtsCI GGATG 8 cut(s) 196, 271, 355, 448, 529, 721, 751, 1125
BtsI GCAGTG 2 cut(s) 614, 957
BtsIMutI CAGTG 4 cut(s) 614, 758, 877, 957
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 1034, 1421
Cfr10I RCCGGY 2 cut(s) 971, 1419
CseI GACGC 1 cut(s) 1649
Csp6I GTAC 3 cut(s) 16, 1113, 1275
CspCI CAANNNNNGTGG 2 cut(s) 54, 89
CviAII CATG 4 cut(s) 99, 1088, 1100, 1307
CviJI RGCY 8 cut(s) 5, 251, 865, 951, 1136, 1151, 1459, 1632
CviKI_1 RGCY 8 cut(s) 5, 251, 865, 951, 1136, 1151, 1459, 1632
CviQI GTAC 3 cut(s) 16, 1113, 1275
DpnI GATC 4 cut(s) 1230, 1386, 1482, 1533
DpnII GATC 4 cut(s) 1228, 1384, 1480, 1531
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 1075
Eco31I GGTCTC 2 cut(s) 1028, 1065
Eco57I CTGAAG 1 cut(s) 144
EcoT14I CCWWGG 1 cut(s) 1075
ErhI CCWWGG 1 cut(s) 1075
FaeI CATG 4 cut(s) 102, 1091, 1103, 1310
FaqI GGGAC 2 cut(s) 1227, 1647
FatI CATG 4 cut(s) 98, 1087, 1099, 1306
FauI CCCGC 2 cut(s) 48, 1138
FauNDI CATATG 1 cut(s) 904
FblI GTMKAC 1 cut(s) 77
Fnu4HI GCNGC 6 cut(s) 6, 620, 824, 1062, 1134, 1326
FokI GGATG 8 cut(s) 183, 258, 342, 435, 516, 708, 738, 1112
Fsp4HI GCNGC 6 cut(s) 6, 620, 824, 1062, 1134, 1326
FspBI CTAG 1 cut(s) 1553
GluI GCNGC 6 cut(s) 6, 620, 824, 1062, 1134, 1326
GsaI CCCAGC 1 cut(s) 893
GsuI CTGGAG 1 cut(s) 627
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 972, 1420
HgaI GACGC 1 cut(s) 1649
Hin1I GRCGYC 1 cut(s) 1270
Hin1II CATG 4 cut(s) 102, 1091, 1103, 1310
HincII GTYRAC 1 cut(s) 1156
HindII GTYRAC 1 cut(s) 1156
HinfI GANTC 8 cut(s) 1298, 1358, 1379, 1397, 1474, 1556, 1598, 1622
HpaII CCGG 2 cut(s) 972, 1420
Hpy166II GTNNAC 6 cut(s) 78, 566, 635, 695, 938, 1156
Hpy188I TCNGA 5 cut(s) 1176, 1363, 1384, 1402, 1473
Hpy188III TCNNGA 2 cut(s) 1478, 1535
Hpy8I GTNNAC 6 cut(s) 78, 566, 635, 695, 938, 1156
Hpy99I CGWCG 6 cut(s) 1272, 1275, 1419, 1428, 1608, 1611
HpyAV CCTTC 9 cut(s) 45, 78, 468, 480, 504, 549, 582, 621, 681
HpyCH4III ACNGT 4 cut(s) 762, 813, 881, 1676
HpyCH4IV ACGT 6 cut(s) 727, 1258, 1270, 1426, 1618, 1667
HpyCH4V TGCA 7 cut(s) 590, 734, 1007, 1016, 1091, 1120, 1328
HpyF10VI GCNNNNNNNGC 3 cut(s) 968, 1013, 1334
HpySE526I ACGT 6 cut(s) 727, 1258, 1270, 1426, 1618, 1667
Hsp92I GRCGYC 1 cut(s) 1270
Hsp92II CATG 4 cut(s) 102, 1091, 1103, 1310
KroI GCCGGC 1 cut(s) 1419
KroNI GCCGGC 1 cut(s) 1421
Kzo9I GATC 4 cut(s) 1228, 1384, 1480, 1531
LmnI GCTCC 1 cut(s) 1096
Lsp1109I GCAGC 2 cut(s) 1145, 1312
LweI GCATC 1 cut(s) 1134
MaeI CTAG 1 cut(s) 1553
MaeII ACGT 6 cut(s) 727, 1258, 1270, 1426, 1618, 1667
MaeIII GTNAC 9 cut(s) 101, 243, 312, 408, 421, 768, 1310, 1507, 1676
MalI GATC 4 cut(s) 1230, 1386, 1482, 1533
MboI GATC 4 cut(s) 1228, 1384, 1480, 1531
MboII GAAGA 9 cut(s) 150, 1051, 1054, 1057, 1235, 1376, 1388, 1538, 1577
MfeI CAATTG 3 cut(s) 915, 1329, 1512
MluCI AATT 8 cut(s) 480, 870, 910, 915, 1320, 1329, 1352, 1512
MlyI GAGTC 2 cut(s) 1292, 1631
MreI CGCCGGCG 1 cut(s) 1419
MroNI GCCGGC 1 cut(s) 1419
MseI TTAA 2 cut(s) 560, 689
MslI CAYNNNNRTG 1 cut(s) 97
MspI CCGG 2 cut(s) 972, 1420
MunI CAATTG 3 cut(s) 915, 1329, 1512
MwoI GCNNNNNNNGC 3 cut(s) 968, 1013, 1334
NaeI GCCGGC 1 cut(s) 1421
NdeI CATATG 1 cut(s) 904
NdeII GATC 4 cut(s) 1228, 1384, 1480, 1531
NgoMIV GCCGGC 1 cut(s) 1419
NlaIII CATG 4 cut(s) 102, 1091, 1103, 1310
NlaIV GGNNCC 1 cut(s) 1432
NmuCI GTSAC 8 cut(s) 243, 312, 408, 421, 768, 1310, 1507, 1676
PaqCI CACCTGC 1 cut(s) 595
PcsI WCGNNNNNNNCGW 5 cut(s) 1255, 1264, 1420, 1423, 1615
PdiI GCCGGC 1 cut(s) 1421
PfeI GAWTC 6 cut(s) 1358, 1379, 1397, 1474, 1556, 1598
PkrI GCNGC 6 cut(s) 7, 621, 825, 1063, 1135, 1327
PleI GAGTC 2 cut(s) 1292, 1630
PpsI GAGTC 2 cut(s) 1292, 1630
PspFI CCCAGC 1 cut(s) 889
PspN4I GGNNCC 1 cut(s) 1432
PstI CTGCAG 1 cut(s) 736
RsaI GTAC 3 cut(s) 17, 1114, 1276
RsaNI GTAC 3 cut(s) 16, 1113, 1275
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 2 cut(s) 560, 689
SatI GCNGC 6 cut(s) 6, 620, 824, 1062, 1134, 1326
Sau3AI GATC 4 cut(s) 1228, 1384, 1480, 1531
SchI GAGTC 2 cut(s) 1292, 1631
SfaNI GCATC 1 cut(s) 1134
SfcI CTRYAG 2 cut(s) 393, 732
SgrAI CRCCGGYG 1 cut(s) 1419
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 8 cut(s) 480, 870, 910, 915, 1320, 1329, 1352, 1512
SspMI CTAG 1 cut(s) 1553
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 4 cut(s) 762, 813, 881, 1676
TaiI ACGT 6 cut(s) 730, 1261, 1273, 1429, 1621, 1670
TaqI TCGA 1 cut(s) 1267
TasI AATT 8 cut(s) 480, 870, 910, 915, 1320, 1329, 1352, 1512
TauI GCSGC 4 cut(s) 8, 622, 826, 1064
TfiI GAWTC 6 cut(s) 1358, 1379, 1397, 1474, 1556, 1598
Tru1I TTAA 2 cut(s) 560, 689
Tru9I TTAA 2 cut(s) 560, 689
TscAI CASTG 4 cut(s) 621, 765, 884, 964
TseFI GTSAC 8 cut(s) 243, 312, 408, 421, 768, 1310, 1507, 1676
TseI GCWGC 2 cut(s) 1133, 1325
Tsp45I GTSAC 8 cut(s) 243, 312, 408, 421, 768, 1310, 1507, 1676
TspDTI ATGAA 4 cut(s) 60, 663, 1389, 1539
TspGWI ACGGA 1 cut(s) 1083
TspRI CASTG 4 cut(s) 621, 765, 884, 964
XmiI GTMKAC 1 cut(s) 77
XspI CTAG 1 cut(s) 1553
ZraI GACGTC 1 cut(s) 1271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.