Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

17607049 .. 17612704

Gene Structure 5656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g23550.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2331 bp

ATGACTGTCACTCCAAACATTTCCATTAACGATGGAAACCTGGTGGTTCACGGAAAGACCATCTTGACAGGAGTGCCGGAAAACATTGTGCTCACTCCGGGATCTGGTGTCGGCCTCGTTGCCGGGACCTTCATTGGTGCCACGGCCTCTCACAGCAAGAGCCTCCATGTCTTCCCCGTCGGTGCTCTAGAGGGTCACCGGTTCATGTGCTTATTCCGGTTTAAGCTATGGTGGATGACTCAGAGAATGGGGTCATGTGGCAAAGAAGTTCCACTGGAGACCCAATTCATGCTTGTGGAGACCAAGGCTGATGGTGAAGGAGGTGATGACATCTACACCGTGTTCCTTCCTCTGCTGGAGGGCCAGTTCCGGTCAGCTCTCCAAGGGAACGAGAGGAATGAACTGGAGATTTGCCTTGAGAGTGGAGATTCTGATGTTCAGACCAATCAAGGTCTTTGCCTTGTTTACGTGCATGCTGGAACTAATCCATTTGAAGTCATCACCCAGGCTGTAAAGGCTGTAGAAAAACATATGCAGACCTTTGTCCACCGTGAGAAGAAGAAGTTGCCTTCTTTCCTTGACTGGTTTGGCTGGTGTACTTGGGATGCCTTCTATACCGATGTCACAGCTGAGGGTGTTGAGGAGGGTCTGAAGAGCTTGAATGAGGGAGGGACACCTCCACGATTTCTAATCGTGGATGATGGTTGGCAACAAATTGAAAGTAAACCCAAGGACAGTAATGTTGTAGTACAAGAAGGAGCACATGATTGTGTGCTTGTTATTTGCAGGTTTGCAAGTAGGCTTACAGGAATAAAGGAGAACGAAAAATTCCAAAAGAATGGTCACAGTGAGCAAGTCTCAGGCCTGAAGCATGTTGTTGATCAAGCAAAACAGCATCATAATGTGAAGTTTGTATATGTATGGCATGCCTTAGTGGGTTACTGGGGTGGAGTGAAACCAGCTGCTTCTGGCATGGAGCATTATGACACTTTTTTGGCATATCCAGTCTCATCTCCTGGTGTGATGGGAAACCAACCTGACATAGTTATGGACAGCTTATCTGTTCACGGTCTTGGTTTAGTGCACCCGAAGAAAGTTTTCAATTTCTACAATGAGCTTCATGCGTACTTGGCTTCCTGTGGAGTGGATGGAGTTAAGGTTGATGTACAAAACATCATTGAGACTCTTGGGTCTGGTCATGGTGGCAGAGTTTCTCTTACCCGAAGCTATCACCAGGCACTTGAGGCTTCGGTTGCTCGGAACTTTCCTGACAACGGATGCATTTCTTGCATGTGTCATAACACTGATGGGCTATACAGTTCCAAGCAGACTGCTGTTGTGAGAGCCTCTGATGACTTCTACCCACGAGATCCTGCTTCTCACACGATTCATATATCTTCTGTGGCTTATAACACCCTTTTCCTTGGAGAGTTTATGCAACCAGACTGGGATATGTTTCATAGTTTACATCCAGCAGCGGATTATCATGGTGCAGCTCGTTCTATTGGTGGGTGTGCAATTTATGTCAGTGATAAACCTGGAAACCACAATTTTGATCTTCTGAGGAAGCTGGTCTTGCCTGATGGATCTGTCCTCCGTGCCAAATTACCTGGTAGGCCAACACGTGATAGTCTCTTTGCTGACCCAGCAAGAGATGGAACCAGCTTGCTCAAGATATGGAATGTGAACAAGTGCTCTGGTGTTGTTGGTGTTTTCAACTGTCAAGGAGCTGGTTGGTGCAAGGTTGAAAAAAAGACACGCATCCATGATACATCTCCTGGTACCCTCACTGGTTCTGTTCGTGCCATTGATGTTGATGTTCTTGCCCAAATTGCTGGTGATGATTGGAGTGGAGAAACAGTAGTTTACGCCCATAAGTCAGGAGAGGTGTTTCGTTTACCAAAAGATGTTTCAGTGCCAGTGACTCTTAAAGTTCTAGAATATGAGCTCTTCCACTTCTGTCCTCTCAAGGAAGTCATGCCCAACATCTCATTTGCACCAATAGGCCTGCTGGACATGTTCAACTCCAGTGGTGCTGTGGAGGAGGTTGTAATCCATCTGGCCTCTGACAAGAAATCAGAGCTTTTTGATGAAGTTCCTTCAGAGTTTACCACTTCTCTTGCTGAGAATCGATCTTCAACTGCAACAATTGCCATTAAAACCCGAGGATGTGGAAGGTTTGGAGCTTACTCTTCTCAGCTTCCACTGAAGTGTACCATTGATAAAGCTGAGACAGAGTTTGAATATGACTCTGCAACTGGATTACTGACTGTTACCATTCCTATCCAGACAGAAGAGATGTACAAATGGCTAGTAGAAATCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

777

Amino Acids

85.22

Weight (kDa)

5.77

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	7 - 751	0.0	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1410
AasI	GACNNNNNNGTC	1 cut(s)	1189
Acc36I	ACCTGC	1 cut(s)	777
Acc65I	GGTACC	1 cut(s)	1781
AccB1I	GGYRCC	2 cut(s)	137, 1781
AciI	CCGC	1 cut(s)	1478
AclWI	GGATC	3 cut(s)	109, 1364, 1594
AcsI	RAATTY	1 cut(s)	827
AcuI	CTGAAG	4 cut(s)	671, 887, 2085, 2228
AcvI	CACGTG	1 cut(s)	1625
AfaI	GTAC	7 cut(s)	598, 750, 1127, 1167, 1783, 2215, 2303
AfiI	CCNNNNNNNGG	2 cut(s)	104, 1274
AflIII	ACRYGT	2 cut(s)	1622, 2016
AgeI	ACCGGT	1 cut(s)	198
AgsI	TTSAA	9 cut(s)	494, 661, 719, 1102, 1717, 1748, 2023, 2139, 2243
AjnI	CCWGG	7 cut(s)	39, 504, 1015, 1233, 1537, 1609, 1777
AjuI	GAANNNNNNNTTGG	2 cut(s)	1894, 1926
AleI	CACNNNNGTG	1 cut(s)	2209
AloI	GAACNNNNNNTCC	2 cut(s)	350, 382
Alw21I	GWGCWC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
Alw26I	GTCTC	7 cut(s)	272, 293, 862, 1012, 1175, 1637, 2225
Alw44I	GTGCAC	1 cut(s)	1082
AlwI	GGATC	3 cut(s)	109, 1364, 1594
Ama87I	CYCGRG	1 cut(s)	2163
AoxI	GGCC	7 cut(s)	112, 144, 361, 862, 1616, 2005, 2061
ApaLI	GTGCAC	1 cut(s)	1082
ApeKI	GCWGC	3 cut(s)	962, 1475, 1493
ApoI	RAATTY	1 cut(s)	827
ArsI	GACNNNNNNTTYG	2 cut(s)	826, 858
AsiGI	ACCGGT	1 cut(s)	198
Asp700I	GAANNNNTTC	1 cut(s)	1097
Asp718I	GGTACC	1 cut(s)	1781
AspS9I	GGNCC	2 cut(s)	126, 361
AsuC2I	CCSGG	2 cut(s)	99, 124
AsuHPI	GGTGA	6 cut(s)	188, 326, 335, 493, 1223, 1850
AvaI	CYCGRG	1 cut(s)	2163
AvaII	GGWCC	1 cut(s)	126
BaeGI	GKGCMC	1 cut(s)	1086
BanI	GGYRCC	2 cut(s)	137, 1781
BanII	GRGCYC	1 cut(s)	1950
BauI	CACGAG	1 cut(s)	1365
BbrPI	CACGTG	1 cut(s)	1625
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
BbvCI	CCTCAGC	1 cut(s)	630
BbvI	GCAGC	3 cut(s)	949, 1487, 1505
BceAI	ACGGC	1 cut(s)	159
BciT130I	CCWGG	7 cut(s)	41, 506, 1017, 1235, 1539, 1611, 1779
BclI	TGATCA	1 cut(s)	880
BcnI	CCSGG	2 cut(s)	99, 124
BcoDI	GTCTC	7 cut(s)	272, 293, 862, 1012, 1175, 1637, 2225
BfaI	CTAG	3 cut(s)	188, 1937, 2312
BfmI	CTRYAG	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	777
BisI	GCNGC	3 cut(s)	963, 1476, 1494
BlsI	GCNGC	3 cut(s)	964, 1477, 1495
Bme1390I	CCNGG	9 cut(s)	41, 99, 124, 506, 1017, 1235, 1539, 1611, 1779
Bme18I	GGWCC	1 cut(s)	126
BmeT110I	CYCGRG	1 cut(s)	2163
BmgT120I	GGNCC	2 cut(s)	126, 361
BmiI	GGNNCC	4 cut(s)	127, 139, 1660, 1783
BmrFI	CCNGG	9 cut(s)	41, 99, 124, 506, 1017, 1235, 1539, 1611, 1779
BmrI	ACTGGG	2 cut(s)	952, 1456
BmsI	GCATC	4 cut(s)	595, 904, 1268, 1770
BmuI	ACTGGG	2 cut(s)	952, 1456
BoxI	GACNNNNGTC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	842, 874
BpmI	CTGGAG	4 cut(s)	296, 377, 425, 2011
Bpu10I	CCTNAGC	1 cut(s)	630
BpuEI	CTTGAG	4 cut(s)	437, 1262, 1655, 1952
BpuMI	CCSGG	2 cut(s)	99, 124
Bsa29I	ATCGAT	1 cut(s)	2131
BsaAI	YACGTR	2 cut(s)	469, 1625
BsaI	GGTCTC	2 cut(s)	272, 293
BsaJI	CCNNGG	7 cut(s)	141, 303, 382, 504, 729, 1423, 2164
BsaWI	WCCGGW	3 cut(s)	198, 216, 369
BsaXI	ACNNNNNCTCC	7 cut(s)	25, 350, 380, 1143, 1173, 1845, 1875
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 1274
Bse118I	RCCGGY	1 cut(s)	198
BseBI	CCWGG	7 cut(s)	41, 506, 1017, 1235, 1539, 1611, 1779
BseCI	ATCGAT	1 cut(s)	2131
BseDI	CCNNGG	7 cut(s)	141, 303, 382, 504, 729, 1423, 2164
BseGI	GGATG	8 cut(s)	240, 610, 703, 1153, 1283, 1468, 1761, 2174
BseLI	CCNNNNNNNGG	2 cut(s)	104, 1274
BseMII	CTCAG	7 cut(s)	254, 621, 873, 1553, 2115, 2210, 2220
BseRI	GAGGAG	2 cut(s)	656, 2057
BseSI	GKGCMC	1 cut(s)	1086
BseXI	GCAGC	3 cut(s)	949, 1487, 1505
BseYI	CCCAGC	1 cut(s)	1645
BsgI	GTGCAG	1 cut(s)	1512
BshFI	GGCC	7 cut(s)	114, 146, 363, 864, 1618, 2007, 2063
BshNI	GGYRCC	2 cut(s)	137, 1781
BshTI	ACCGGT	1 cut(s)	198
BshVI	ATCGAT	1 cut(s)	2131
BsiHKAI	GWGCWC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
BsiHKCI	CYCGRG	1 cut(s)	2163
BsiSI	CCGG	6 cut(s)	77, 98, 123, 199, 217, 370
BslFI	GGGAC	2 cut(s)	139, 685
BslI	CCNNNNNNNGG	2 cut(s)	104, 1274
BsmAI	GTCTC	7 cut(s)	272, 293, 862, 1012, 1175, 1637, 2225
BsmFI	GGGAC	2 cut(s)	139, 685
BsnI	GGCC	7 cut(s)	114, 146, 363, 864, 1618, 2007, 2063
Bso31I	GGTCTC	2 cut(s)	272, 293
BsoBI	CYCGRG	1 cut(s)	2163
Bsp1286I	GDGCHC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
Bsp1407I	TGTACA	2 cut(s)	1165, 2301
Bsp143I	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
BspACI	CCGC	1 cut(s)	1478
BspANI	GGCC	7 cut(s)	114, 146, 363, 864, 1618, 2007, 2063
BspCNI	CTCAG	7 cut(s)	253, 622, 872, 1554, 2116, 2209, 2221
BspDI	ATCGAT	1 cut(s)	2131
BspLI	GGNNCC	4 cut(s)	127, 139, 1660, 1783
BspMI	ACCTGC	1 cut(s)	777
BspPI	GGATC	3 cut(s)	109, 1364, 1594
BspQI	GCTCTTC	2 cut(s)	647, 1955
BspT107I	GGYRCC	2 cut(s)	137, 1781
BspTNI	GGTCTC	2 cut(s)	272, 293
BsrFI	RCCGGY	1 cut(s)	198
BsrGI	TGTACA	2 cut(s)	1165, 2301
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	7 cut(s)	141, 303, 382, 504, 729, 1423, 2164
BssMI	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
BssSI	CACGAG	1 cut(s)	1365
BssT1I	CCWWGG	4 cut(s)	303, 382, 729, 1423
Bst2BI	CACGAG	1 cut(s)	1365
Bst2UI	CCWGG	7 cut(s)	41, 506, 1017, 1235, 1539, 1611, 1779
Bst6I	CTCTTC	4 cut(s)	647, 1955, 2197, 2289
BstAPI	GCANNNNNTGC	2 cut(s)	1287, 2150
BstAUI	TGTACA	2 cut(s)	1165, 2301
BstBAI	YACGTR	2 cut(s)	469, 1625
BstC8I	GCNNGC	4 cut(s)	474, 927, 1667, 2009
BstDEI	CTNAG	8 cut(s)	240, 630, 859, 931, 1562, 2124, 2196, 2229
BstDSI	CCRYGG	1 cut(s)	141
BstEII	GGTNACC	1 cut(s)	194
BstF5I	GGATG	8 cut(s)	240, 610, 703, 1153, 1283, 1468, 1761, 2174
BstKTI	GATC	6 cut(s)	104, 883, 1372, 1558, 1589, 2135
BstMAI	GTCTC	7 cut(s)	272, 293, 862, 1012, 1175, 1637, 2225
BstMBI	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
BstMWI	GCNNNNNNNGC	9 cut(s)	515, 1130, 1244, 1253, 1287, 1576, 1646, 1832, 2150
BstNI	CCWGG	7 cut(s)	41, 506, 1017, 1235, 1539, 1611, 1779
BstNSI	RCATGY	5 cut(s)	476, 875, 929, 1294, 2020
BstPAI	GACNNNNGTC	1 cut(s)	542
BstPI	GGTNACC	1 cut(s)	194
BstSCI	CCNGG	9 cut(s)	39, 97, 122, 504, 1015, 1233, 1537, 1609, 1777
BstSFI	CTRYAG	1 cut(s)	519
BstSLI	GKGCMC	1 cut(s)	1086
BstV1I	GCAGC	3 cut(s)	949, 1487, 1505
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	3 cut(s)	101, 1369, 1586
BstXI	CCANNNNNNTGG	2 cut(s)	839, 1835
BstYI	RGATCY	3 cut(s)	101, 1369, 1586
Bsu15I	ATCGAT	1 cut(s)	2131
BsuRI	GGCC	7 cut(s)	114, 146, 363, 864, 1618, 2007, 2063
BsuTUI	ATCGAT	1 cut(s)	2131
BtgI	CCRYGG	1 cut(s)	141
BtsCI	GGATG	8 cut(s)	240, 610, 703, 1153, 1283, 1468, 1761, 2174
BtsIMutI	CAGTG	9 cut(s)	272, 853, 1302, 1534, 1788, 1920, 1926, 2035, 2204
BveI	ACCTGC	1 cut(s)	777
Cac8I	GCNNGC	4 cut(s)	474, 927, 1667, 2009
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	126, 361
ClaI	ATCGAT	1 cut(s)	2131
CsiI	ACCWGGT	2 cut(s)	39, 1609
Csp6I	GTAC	7 cut(s)	597, 749, 1126, 1166, 1782, 2214, 2302
CspAI	ACCGGT	1 cut(s)	198
CspCI	CAANNNNNGTGG	4 cut(s)	2011, 2046, 2101, 2136
CviQI	GTAC	7 cut(s)	597, 749, 1126, 1166, 1782, 2214, 2302
DdeI	CTNAG	8 cut(s)	240, 630, 859, 931, 1562, 2124, 2196, 2229
DpnI	GATC	6 cut(s)	103, 882, 1371, 1557, 1588, 2134
DpnII	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
DrdI	GACNNNNNNGTC	1 cut(s)	1189
DseDI	GACNNNNNNGTC	1 cut(s)	1189
Eam1104I	CTCTTC	4 cut(s)	647, 1955, 2197, 2289
EarI	CTCTTC	4 cut(s)	647, 1955, 2197, 2289
Ecl136II	GAGCTC	1 cut(s)	1948
Eco130I	CCWWGG	4 cut(s)	303, 382, 729, 1423
Eco147I	AGGCCT	2 cut(s)	864, 2007
Eco24I	GRGCYC	1 cut(s)	1950
Eco31I	GGTCTC	2 cut(s)	272, 293
Eco47I	GGWCC	1 cut(s)	126
Eco53kI	GAGCTC	1 cut(s)	1948
Eco57I	CTGAAG	4 cut(s)	671, 887, 2085, 2228
Eco72I	CACGTG	1 cut(s)	1625
Eco88I	CYCGRG	1 cut(s)	2163
Eco91I	GGTNACC	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	1948
EcoO109I	RGGNCCY	1 cut(s)	126
EcoO65I	GGTNACC	1 cut(s)	194
EcoRII	CCWGG	7 cut(s)	39, 504, 1015, 1233, 1537, 1609, 1777
EcoT14I	CCWWGG	4 cut(s)	303, 382, 729, 1423
EcoT22I	ATGCAT	1 cut(s)	1283
EcoT38I	GRGCYC	1 cut(s)	1950
ErhI	CCWWGG	4 cut(s)	303, 382, 729, 1423
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 1559, 1591
FaqI	GGGAC	2 cut(s)	139, 685
FauNDI	CATATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	3 cut(s)	963, 1476, 1494
FokI	GGATG	8 cut(s)	247, 617, 710, 1160, 1290, 1455, 1748, 2181
FriOI	GRGCYC	1 cut(s)	1950
Fsp4HI	GCNGC	3 cut(s)	963, 1476, 1494
FspBI	CTAG	3 cut(s)	188, 1937, 2312
GluI	GCNGC	3 cut(s)	963, 1476, 1494
GsaI	CCCAGC	1 cut(s)	1649
GsuI	CTGGAG	4 cut(s)	296, 377, 425, 2011
HaeIII	GGCC	7 cut(s)	114, 146, 363, 864, 1618, 2007, 2063
HapII	CCGG	6 cut(s)	77, 98, 123, 199, 217, 370
HinfI	GANTC	7 cut(s)	238, 428, 1183, 1387, 1924, 2128, 2249
HpaII	CCGG	6 cut(s)	77, 98, 123, 199, 217, 370
HphI	GGTGA	6 cut(s)	188, 326, 335, 493, 1223, 1850
Hpy188III	TCNNGA	7 cut(s)	64, 188, 1268, 1672, 1881, 1937, 2287
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	8 cut(s)	139, 311, 356, 579, 619, 749, 2109, 2169
HpyCH4IV	ACGT	2 cut(s)	468, 1624
HpyF10VI	GCNNNNNNNGC	9 cut(s)	515, 1130, 1244, 1253, 1287, 1576, 1646, 1832, 2150
HpyF3I	CTNAG	8 cut(s)	240, 630, 859, 931, 1562, 2124, 2196, 2229
HpySE526I	ACGT	2 cut(s)	468, 1624
KpnI	GGTACC	1 cut(s)	1785
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
LguI	GCTCTTC	2 cut(s)	647, 1955
LmnI	GCTCC	4 cut(s)	758, 976, 1727, 2183
Lsp1109I	GCAGC	3 cut(s)	949, 1487, 1505
LweI	GCATC	4 cut(s)	595, 904, 1268, 1770
MabI	ACCWGGT	2 cut(s)	39, 1609
MaeI	CTAG	3 cut(s)	188, 1937, 2312
MaeII	ACGT	2 cut(s)	468, 1624
MaeIII	GTNAC	7 cut(s)	7, 194, 622, 842, 938, 1921, 2272
MalI	GATC	6 cut(s)	103, 882, 1371, 1557, 1588, 2134
MboI	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
MfeI	CAATTG	1 cut(s)	2148
MflI	RGATCY	3 cut(s)	101, 1369, 1586
MhlI	GDGCHC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
MluCI	AATT	9 cut(s)	284, 714, 827, 1102, 1518, 1549, 1604, 1830, 2148
MlyI	GAGTC	4 cut(s)	232, 1177, 1918, 2243
Mph1103I	ATGCAT	1 cut(s)	1283
MroXI	GAANNNNTTC	1 cut(s)	1097
MseI	TTAA	6 cut(s)	27, 222, 1155, 1929, 2157, 2329
MslI	CAYNNNNRTG	5 cut(s)	293, 768, 900, 1046, 2209
MspA1I	CMGCKG	3 cut(s)	629, 962, 1478
MspI	CCGG	6 cut(s)	77, 98, 123, 199, 217, 370
MspR9I	CCNGG	9 cut(s)	41, 99, 124, 506, 1017, 1235, 1539, 1611, 1779
MunI	CAATTG	1 cut(s)	2148
MvaI	CCWGG	7 cut(s)	41, 506, 1017, 1235, 1539, 1611, 1779
MwoI	GCNNNNNNNGC	9 cut(s)	515, 1130, 1244, 1253, 1287, 1576, 1646, 1832, 2150
NciI	CCSGG	2 cut(s)	99, 124
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
NlaIV	GGNNCC	4 cut(s)	127, 139, 1660, 1783
NmuCI	GTSAC	5 cut(s)	7, 194, 622, 842, 1921
NsiI	ATGCAT	1 cut(s)	1283
NspI	RCATGY	5 cut(s)	476, 875, 929, 1294, 2020
OliI	CACNNNNGTG	1 cut(s)	2209
PaeI	GCATGC	2 cut(s)	476, 929
PceI	AGGCCT	2 cut(s)	864, 2007
PciI	ACATGT	1 cut(s)	2016
PciSI	GCTCTTC	2 cut(s)	647, 1955
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	3 cut(s)	428, 1387, 2128
PfoI	TCCNGGA	1 cut(s)	97
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	964, 1477, 1495
PleI	GAGTC	4 cut(s)	232, 1177, 1918, 2243
PmaCI	CACGTG	1 cut(s)	1625
PmlI	CACGTG	1 cut(s)	1625
PpsI	GAGTC	4 cut(s)	232, 1177, 1918, 2243
Ppu21I	YACGTR	2 cut(s)	469, 1625
PpuMI	RGGWCCY	1 cut(s)	126
PscI	ACATGT	1 cut(s)	2016
PshAI	GACNNNNGTC	1 cut(s)	542
PsiI	TTATAA	1 cut(s)	1410
Psp124BI	GAGCTC	1 cut(s)	1950
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	7 cut(s)	39, 504, 1015, 1233, 1537, 1609, 1777
PspCI	CACGTG	1 cut(s)	1625
PspEI	GGTNACC	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	1645
PspGI	CCWGG	7 cut(s)	39, 504, 1015, 1233, 1537, 1609, 1777
PspN4I	GGNNCC	4 cut(s)	127, 139, 1660, 1783
PspPI	GGNCC	2 cut(s)	126, 361
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	3 cut(s)	101, 1369, 1586
PvuII	CAGCTG	2 cut(s)	629, 962
RsaI	GTAC	7 cut(s)	598, 750, 1127, 1167, 1783, 2215, 2303
RsaNI	GTAC	7 cut(s)	597, 749, 1126, 1166, 1782, 2214, 2302
RseI	CAYNNNNRTG	5 cut(s)	293, 768, 900, 1046, 2209
SacI	GAGCTC	1 cut(s)	1950
SapI	GCTCTTC	2 cut(s)	647, 1955
SaqAI	TTAA	6 cut(s)	27, 222, 1155, 1929, 2157, 2329
SatI	GCNGC	3 cut(s)	963, 1476, 1494
Sau3AI	GATC	6 cut(s)	101, 880, 1369, 1555, 1586, 2132
Sau96I	GGNCC	2 cut(s)	126, 361
SchI	GAGTC	4 cut(s)	232, 1177, 1918, 2243
ScrFI	CCNGG	9 cut(s)	41, 99, 124, 506, 1017, 1235, 1539, 1611, 1779
SduI	GDGCHC	6 cut(s)	93, 187, 763, 1086, 1697, 1950
SexAI	ACCWGGT	2 cut(s)	39, 1609
SfaNI	GCATC	4 cut(s)	595, 904, 1268, 1770
SfcI	CTRYAG	1 cut(s)	519
SinI	GGWCC	1 cut(s)	126
SmiMI	CAYNNNNRTG	5 cut(s)	293, 768, 900, 1046, 2209
SmlI	CTYRAG	4 cut(s)	416, 1241, 1670, 1967
SmoI	CTYRAG	4 cut(s)	416, 1241, 1670, 1967
SphI	GCATGC	2 cut(s)	476, 929
Sse9I	AATT	9 cut(s)	284, 714, 827, 1102, 1518, 1549, 1604, 1830, 2148
SseBI	AGGCCT	2 cut(s)	864, 2007
SsiI	CCGC	1 cut(s)	1478
SspMI	CTAG	3 cut(s)	188, 1937, 2312
SstI	GAGCTC	1 cut(s)	1950
StuI	AGGCCT	2 cut(s)	864, 2007
StyD4I	CCNGG	9 cut(s)	39, 97, 122, 504, 1015, 1233, 1537, 1609, 1777
StyI	CCWWGG	4 cut(s)	303, 382, 729, 1423
TaiI	ACGT	2 cut(s)	471, 1627
TaqI	TCGA	1 cut(s)	2131
TasI	AATT	9 cut(s)	284, 714, 827, 1102, 1518, 1549, 1604, 1830, 2148
TatI	WGTACW	4 cut(s)	596, 748, 1165, 2301
TfiI	GAWTC	3 cut(s)	428, 1387, 2128
Tru1I	TTAA	6 cut(s)	27, 222, 1155, 1929, 2157, 2329
Tru9I	TTAA	6 cut(s)	27, 222, 1155, 1929, 2157, 2329
TscAI	CASTG	9 cut(s)	279, 853, 1309, 1534, 1795, 1920, 1926, 2035, 2211
TseFI	GTSAC	5 cut(s)	7, 194, 622, 842, 1921
TseI	GCWGC	3 cut(s)	962, 1475, 1493
Tsp45I	GTSAC	5 cut(s)	7, 194, 622, 842, 1921
TspDTI	ATGAA	8 cut(s)	121, 193, 277, 414, 1109, 1379, 1448, 2106
TspGWI	ACGGA	3 cut(s)	66, 1290, 1586
TspRI	CASTG	9 cut(s)	279, 853, 1309, 1534, 1795, 1920, 1926, 2035, 2211
VneI	GTGCAC	1 cut(s)	1082
VpaK11BI	GGWCC	1 cut(s)	126
XapI	RAATTY	1 cut(s)	827
XbaI	TCTAGA	2 cut(s)	187, 1936
XceI	RCATGY	5 cut(s)	476, 875, 929, 1294, 2020
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2035
XmnI	GAANNNNTTC	1 cut(s)	1097
XspI	CTAG	3 cut(s)	188, 1937, 2312
Zsp2I	ATGCAT	1 cut(s)	1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.