Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

27220121 .. 27225532

Gene Structure 5412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG274100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1758 bp

ATGCAAACCTTTGTCCATCGTGAGAAGAAAAAGTTGCCTTCTTTCCTCGATTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACCGATGTCACAGCTGAGGGTGTCGTGGATGGTCTTAAAAGCTTGAATGAGGGAGGGACGCCTCCGCGATTTCTAATCGTAGATGATGGTTGGCAACAAATTGAAAGTAAACCCAAGGATACTAATGTTGCAGTACAAGAAGGAGCACAGTTTGCAAGTAGGCTTACAGGAATAAAAGAGAATGAAAAATTCCAAAAGAATGGACAGAGTGAGCAAGTCTCAGGCCTGAAACATGTTGTTGATGAAGCGAAGCAGCATCACAATGTGAAGTTTGTGTACGTATGGCATGCCTTAGTTGGGTACTGGGGTGGAGTGAAACCAGCTGCTTCTGGCATGGAGCATTATGACACTGCTTTGGCTTATCCAGTCTCATCTCCTGGTGTGATGGGAAACCAACCTGACATAGTTTTTGACAGCTTATCTGTTCATGGTCTTGGTTTGGTGCATCCAAAGAAAGTTTTCAATTTCTACAATGAGCTTCATGCGTATTTGTCTTCCTGTGGAGTGGATGGAGTTAAGGTTGATGTACAGAACATCATTGAGACTCTTGGGTCTGGTCATGGTGGCAGAGTTTCTCTGACCCGAAGCTATCACCAGGCACTGGAGGCTTCGGTTGCTCGGAACTTTCCTGACAACGGATGCATTTCTTGCATGTGTCATAACACTGATGGGCTATATAGTTCCAAGCAGACTGCTGTTGTGAGAGCTTCTGATGACTTCTACCCACGGGATCCTGCTTCTCACACGATTCATATATCTTCTGTGGCTTATAACACTCTTTTCCTTGGCGAGTTTATGCAACCAGACTGGGATATGTTTCATAGTTTACATCCAGCAGCGGATTATCATGGTGCAGCTCGTTCTATTGGTGGATGTGCAATCTATGTCAGTGATAAACCTGGAAACCACAACTTCGATCTTTTGAGGAAGCTGGTCCTGCCTGATGGATCTGTCCTCCGTGCTCAATTACCTGGTAGGCCAACATGTGATTGTCTCTTTGCTGACCCAGCAAGAGATGGAACCAGCTTGCTCAAGATATGGAATGTGAACAAGTGCTCTGGTGTTGTTGGTGTATTCAACTGTCAAGGGGCCGGTTGGTGCAAGGTTGAAAAGAAGACCCGCATCCATGATGCATCTCCTGGTACCCTCACTGGTTCTGTTCGTGCTATTGATGTTGATAGCCTTGCCCAAATTGCTGGTGATGATTGGAATGGAGAAACAGTAGTTTATGCCCATAAGTCAGGAGAGGTGTTTCGTTTACCAAAAGATGTTTCAGTGCCAGTGACACTTAAAGTTCTGGAGTATGAGCTCTTCCATTTCTGTCCTCTCAAGGAGGTTACACCCAACATCTCATTTGCTCCAATAGGCCTGCTTGACATGTTCAACTCCAGTGGTGCTGTGGAGCATGTTGTAATCCATCTGGCTTCTGACGGCGAAGTTTCTTCAGAGCTTACCACTTCTCTCAGTGAGAATAGATCTTCAACTGCCACAGTCACCATCAAAACCAGAGGATGTGGAAGGTTTGGAGCTTACTCTTCTCAGCGTCCCCTGAAGTGTACCGTTGATAGAGTTGAGACGGACTTTGAATATGACACTGCAACTGGATTACTAACCTTTACCATCCCTATCCCAAAAGAGGATATGTATAAATGGCTAGTAGAAATCCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

585

Amino Acids

64.27

Weight (kDa)

5.9

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	1 - 568	1.6e-261	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	634
Acc65I	GGTACC	1 cut(s)	1226
AccB1I	GGYRCC	1 cut(s)	1226
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccII	CGCG	1 cut(s)	151
AciI	CCGC	3 cut(s)	149, 923, 1204
AclWI	GGATC	3 cut(s)	809, 822, 1039
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	1512, 1655
AcyI	GRCGYC	1 cut(s)	143
AdeI	CACNNNGTG	1 cut(s)	349
AfaI	GTAC	6 cut(s)	219, 362, 386, 612, 1228, 1642
AfiI	CCNNNNNNNGG	4 cut(s)	381, 685, 719, 1720
AflIII	ACRYGT	3 cut(s)	316, 1067, 1461
AgsI	TTSAA	8 cut(s)	130, 188, 547, 1162, 1193, 1468, 1566, 1670
AjnI	CCWGG	5 cut(s)	460, 678, 982, 1054, 1222
AjuI	GAANNNNNNNTTGG	2 cut(s)	1339, 1371
Alw21I	GWGCWC	5 cut(s)	68, 232, 1048, 1142, 1395
Alw26I	GTCTC	5 cut(s)	307, 457, 620, 1082, 1652
Alw44I	GTGCAC	1 cut(s)	64
AlwI	GGATC	3 cut(s)	809, 822, 1039
AlwNI	CAGNNNCTG	1 cut(s)	685
AoxI	GGCC	4 cut(s)	307, 1061, 1173, 1450
ApaLI	GTGCAC	1 cut(s)	64
ApeKI	GCWGC	4 cut(s)	337, 407, 920, 938
ApoI	RAATTY	1 cut(s)	272
ArsI	GACNNNNNNTTYG	2 cut(s)	476, 508
Asp700I	GAANNNNTTC	1 cut(s)	542
Asp718I	GGTACC	1 cut(s)	1226
AspS9I	GGNCC	2 cut(s)	1018, 1173
AsuHPI	GGTGA	3 cut(s)	668, 1295, 1570
AvaII	GGWCC	1 cut(s)	1018
BaeGI	GKGCMC	1 cut(s)	68
BaeI	ACNNNNGTAYC	4 cut(s)	195, 228, 376, 409
BamHI	GGATCC	1 cut(s)	814
BanI	GGYRCC	1 cut(s)	1226
BanII	GRGCYC	1 cut(s)	1395
BarI	GAAGNNNNNNTAC	4 cut(s)	344, 376, 1379, 1411
BbsI	GAAGAC	2 cut(s)	570, 1205
Bbv12I	GWGCWC	5 cut(s)	68, 232, 1048, 1142, 1395
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	4 cut(s)	349, 394, 932, 950
BceAI	ACGGC	1 cut(s)	1531
BciT130I	CCWGG	5 cut(s)	462, 680, 984, 1056, 1224
BciVI	GTATCC	1 cut(s)	196
BcoDI	GTCTC	5 cut(s)	307, 457, 620, 1082, 1652
BfaI	CTAG	1 cut(s)	1739
BfuI	GTATCC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	1559
BisI	GCNGC	4 cut(s)	338, 408, 921, 939
BlsI	GCNGC	4 cut(s)	339, 409, 922, 940
Bme1390I	CCNGG	5 cut(s)	462, 680, 984, 1056, 1224
Bme18I	GGWCC	1 cut(s)	1018
BmgT120I	GGNCC	2 cut(s)	1018, 1173
BmiI	GGNNCC	4 cut(s)	816, 1105, 1174, 1228
BmrFI	CCNGG	5 cut(s)	462, 680, 984, 1056, 1224
BmrI	ACTGGG	2 cut(s)	397, 901
BmsI	GCATC	7 cut(s)	64, 349, 538, 713, 1204, 1215, 1226
BmuI	ACTGGG	2 cut(s)	397, 901
BpiI	GAAGAC	2 cut(s)	570, 1205
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpmI	CTGGAG	3 cut(s)	707, 1403, 1456
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	2 cut(s)	1100, 1397
BsaAI	YACGTR	1 cut(s)	364
BsaHI	GRCGYC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	198, 809, 868
BsaXI	ACNNNNNCTCC	4 cut(s)	588, 618, 1290, 1320
Bsc4I	CCNNNNNNNGG	4 cut(s)	381, 685, 719, 1720
Bse118I	RCCGGY	1 cut(s)	1175
Bse1I	ACTGG	8 cut(s)	392, 449, 690, 896, 1240, 1364, 1473, 1690
BseBI	CCWGG	5 cut(s)	462, 680, 984, 1056, 1224
BseDI	CCNNGG	3 cut(s)	198, 809, 868
BseLI	CCNNNNNNNGG	4 cut(s)	381, 685, 719, 1720
BseMII	CTCAG	4 cut(s)	90, 318, 1561, 1637
BseNI	ACTGG	8 cut(s)	392, 449, 690, 896, 1240, 1364, 1473, 1690
BseSI	GKGCMC	1 cut(s)	68
BseXI	GCAGC	4 cut(s)	349, 394, 932, 950
BseYI	CCCAGC	1 cut(s)	1090
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	4 cut(s)	309, 1063, 1175, 1452
BshNI	GGYRCC	1 cut(s)	1226
BsiHKAI	GWGCWC	5 cut(s)	68, 232, 1048, 1142, 1395
BsiSI	CCGG	1 cut(s)	1176
BslFI	GGGAC	2 cut(s)	154, 1614
BslI	CCNNNNNNNGG	4 cut(s)	381, 685, 719, 1720
BsmAI	GTCTC	5 cut(s)	307, 457, 620, 1082, 1652
BsmBI	CGTCTC	1 cut(s)	1652
BsmFI	GGGAC	2 cut(s)	154, 1614
BsnI	GGCC	4 cut(s)	309, 1063, 1175, 1452
Bsp1286I	GDGCHC	5 cut(s)	68, 232, 1048, 1142, 1395
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	4 cut(s)	814, 1000, 1031, 1559
BspACI	CCGC	3 cut(s)	149, 923, 1204
BspANI	GGCC	4 cut(s)	309, 1063, 1175, 1452
BspCNI	CTCAG	4 cut(s)	91, 317, 1560, 1636
BspFNI	CGCG	1 cut(s)	151
BspLI	GGNNCC	4 cut(s)	816, 1105, 1174, 1228
BspPI	GGATC	3 cut(s)	809, 822, 1039
BspQI	GCTCTTC	1 cut(s)	1400
BspT107I	GGYRCC	1 cut(s)	1226
BsrFI	RCCGGY	1 cut(s)	1175
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	8 cut(s)	392, 449, 690, 896, 1240, 1364, 1473, 1690
BssAI	RCCGGY	1 cut(s)	1175
BssECI	CCNNGG	3 cut(s)	198, 809, 868
BssMI	GATC	4 cut(s)	814, 1000, 1031, 1559
BssNI	GRCGYC	1 cut(s)	143
BssT1I	CCWWGG	2 cut(s)	198, 868
Bst2UI	CCWGG	5 cut(s)	462, 680, 984, 1056, 1224
Bst4CI	ACNGT	5 cut(s)	234, 1166, 1306, 1576, 1645
Bst6I	CTCTTC	2 cut(s)	1400, 1624
BstACI	GRCGYC	1 cut(s)	143
BstAPI	GCANNNNNTGC	2 cut(s)	236, 732
BstAUI	TGTACA	1 cut(s)	610
BstBAI	YACGTR	1 cut(s)	364
BstC8I	GCNNGC	3 cut(s)	372, 1112, 1454
BstDEI	CTNAG	5 cut(s)	99, 304, 376, 1547, 1623
BstDSI	CCRYGG	1 cut(s)	809
BstFNI	CGCG	1 cut(s)	151
BstKTI	GATC	4 cut(s)	817, 1003, 1034, 1562
BstMAI	GTCTC	5 cut(s)	307, 457, 620, 1082, 1652
BstMBI	GATC	4 cut(s)	814, 1000, 1031, 1559
BstMWI	GCNNNNNNNGC	7 cut(s)	236, 689, 698, 732, 1021, 1091, 1277
BstNI	CCWGG	5 cut(s)	462, 680, 984, 1056, 1224
BstNSI	RCATGY	6 cut(s)	320, 374, 739, 1071, 1465, 1493
BstSCI	CCNGG	5 cut(s)	460, 678, 982, 1054, 1222
BstSLI	GKGCMC	1 cut(s)	68
BstSNI	TACGTA	1 cut(s)	364
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	4 cut(s)	349, 394, 932, 950
BstV2I	GAAGAC	2 cut(s)	570, 1205
BstX2I	RGATCY	3 cut(s)	814, 1031, 1559
BstXI	CCANNNNNNTGG	2 cut(s)	284, 1280
BstYI	RGATCY	3 cut(s)	814, 1031, 1559
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	4 cut(s)	309, 1063, 1175, 1452
BtgI	CCRYGG	1 cut(s)	809
BtsI	GCAGTG	2 cut(s)	432, 1677
Cac8I	GCNNGC	3 cut(s)	372, 1112, 1454
CaiI	CAGNNNCTG	1 cut(s)	685
Cfr10I	RCCGGY	1 cut(s)	1175
Cfr13I	GGNCC	2 cut(s)	1018, 1173
CseI	GACGC	2 cut(s)	151, 1616
CsiI	ACCWGGT	1 cut(s)	1054
Csp6I	GTAC	6 cut(s)	218, 361, 385, 611, 1227, 1641
CspCI	CAANNNNNGTGG	2 cut(s)	1456, 1491
CviQI	GTAC	6 cut(s)	218, 361, 385, 611, 1227, 1641
DdeI	CTNAG	5 cut(s)	99, 304, 376, 1547, 1623
DpnI	GATC	4 cut(s)	816, 1002, 1033, 1561
DpnII	GATC	4 cut(s)	814, 1000, 1031, 1559
DraIII	CACNNNGTG	1 cut(s)	349
DrdI	GACNNNNNNGTC	1 cut(s)	634
DseDI	GACNNNNNNGTC	1 cut(s)	634
Eam1104I	CTCTTC	2 cut(s)	1400, 1624
EarI	CTCTTC	2 cut(s)	1400, 1624
Ecl136II	GAGCTC	1 cut(s)	1393
Eco105I	TACGTA	1 cut(s)	364
Eco130I	CCWWGG	2 cut(s)	198, 868
Eco147I	AGGCCT	2 cut(s)	309, 1452
Eco24I	GRGCYC	1 cut(s)	1395
Eco47I	GGWCC	1 cut(s)	1018
Eco53kI	GAGCTC	1 cut(s)	1393
Eco57I	CTGAAG	2 cut(s)	1512, 1655
EcoICRI	GAGCTC	1 cut(s)	1393
EcoRII	CCWGG	5 cut(s)	460, 678, 982, 1054, 1222
EcoT14I	CCWWGG	2 cut(s)	198, 868
EcoT22I	ATGCAT	2 cut(s)	728, 1219
EcoT38I	GRGCYC	1 cut(s)	1395
ErhI	CCWWGG	2 cut(s)	198, 868
Esp3I	CGTCTC	1 cut(s)	1652
FaqI	GGGAC	2 cut(s)	154, 1614
FauI	CCCGC	1 cut(s)	1211
Fnu4HI	GCNGC	4 cut(s)	338, 408, 921, 939
FriOI	GRGCYC	1 cut(s)	1395
Fsp4HI	GCNGC	4 cut(s)	338, 408, 921, 939
FspBI	CTAG	1 cut(s)	1739
GluI	GCNGC	4 cut(s)	338, 408, 921, 939
GsaI	CCCAGC	1 cut(s)	1094
GsuI	CTGGAG	3 cut(s)	707, 1403, 1456
HaeIII	GGCC	4 cut(s)	309, 1063, 1175, 1452
HapII	CCGG	1 cut(s)	1176
HgaI	GACGC	2 cut(s)	151, 1616
Hin1I	GRCGYC	1 cut(s)	143
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	628, 832
HpaII	CCGG	1 cut(s)	1176
HphI	GGTGA	3 cut(s)	668, 1295, 1570
Hpy166II	GTNNAC	7 cut(s)	66, 194, 361, 911, 1132, 1343, 1641
Hpy188I	TCNGA	5 cut(s)	663, 705, 796, 1513, 1531
Hpy188III	TCNNGA	5 cut(s)	20, 713, 1117, 1326, 1382
Hpy8I	GTNNAC	7 cut(s)	66, 194, 361, 911, 1132, 1343, 1641
HpyAV	CCTTC	3 cut(s)	48, 218, 1596
HpyCH4III	ACNGT	5 cut(s)	234, 1166, 1306, 1576, 1645
HpyCH4IV	ACGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	7 cut(s)	236, 689, 698, 732, 1021, 1091, 1277
HpyF3I	CTNAG	5 cut(s)	99, 304, 376, 1547, 1623
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	1230
Kzo9I	GATC	4 cut(s)	814, 1000, 1031, 1559
LguI	GCTCTTC	1 cut(s)	1400
LmnI	GCTCC	5 cut(s)	227, 421, 1447, 1486, 1610
Lsp1109I	GCAGC	4 cut(s)	349, 394, 932, 950
LweI	GCATC	7 cut(s)	64, 349, 538, 713, 1204, 1215, 1226
MabI	ACCWGGT	1 cut(s)	1054
MaeI	CTAG	1 cut(s)	1739
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	4 cut(s)	91, 1366, 1420, 1576
MalI	GATC	4 cut(s)	816, 1002, 1033, 1561
MboI	GATC	4 cut(s)	814, 1000, 1031, 1559
MboII	GAAGA	8 cut(s)	37, 570, 834, 1210, 1387, 1518, 1554, 1611
MflI	RGATCY	3 cut(s)	814, 1031, 1559
MhlI	GDGCHC	5 cut(s)	68, 232, 1048, 1142, 1395
MluCI	AATT	5 cut(s)	183, 272, 547, 1049, 1275
MlyI	GAGTC	1 cut(s)	622
Mph1103I	ATGCAT	2 cut(s)	728, 1219
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	4 cut(s)	120, 600, 1374, 1756
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	3 cut(s)	98, 407, 923
MspI	CCGG	1 cut(s)	1176
MspR9I	CCNGG	5 cut(s)	462, 680, 984, 1056, 1224
MvaI	CCWGG	5 cut(s)	462, 680, 984, 1056, 1224
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	7 cut(s)	236, 689, 698, 732, 1021, 1091, 1277
NdeII	GATC	4 cut(s)	814, 1000, 1031, 1559
NlaIV	GGNNCC	4 cut(s)	816, 1105, 1174, 1228
NmuCI	GTSAC	3 cut(s)	91, 1366, 1576
NsiI	ATGCAT	2 cut(s)	728, 1219
NspI	RCATGY	6 cut(s)	320, 374, 739, 1071, 1465, 1493
PaeI	GCATGC	1 cut(s)	374
PceI	AGGCCT	2 cut(s)	309, 1452
PciI	ACATGT	3 cut(s)	316, 1067, 1461
PciSI	GCTCTTC	1 cut(s)	1400
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	1 cut(s)	832
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	4 cut(s)	339, 409, 922, 940
PleI	GAGTC	1 cut(s)	622
PpsI	GAGTC	1 cut(s)	622
Ppu21I	YACGTR	1 cut(s)	364
PscI	ACATGT	3 cut(s)	316, 1067, 1461
PsiI	TTATAA	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	1395
Psp6I	CCWGG	5 cut(s)	460, 678, 982, 1054, 1222
PspFI	CCCAGC	1 cut(s)	1090
PspGI	CCWGG	5 cut(s)	460, 678, 982, 1054, 1222
PspN4I	GGNNCC	4 cut(s)	816, 1105, 1174, 1228
PspPI	GGNCC	2 cut(s)	1018, 1173
PstNI	CAGNNNCTG	1 cut(s)	685
PsuI	RGATCY	3 cut(s)	814, 1031, 1559
PvuII	CAGCTG	2 cut(s)	98, 407
RsaI	GTAC	6 cut(s)	219, 362, 386, 612, 1228, 1642
RsaNI	GTAC	6 cut(s)	218, 361, 385, 611, 1227, 1641
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	1395
SapI	GCTCTTC	1 cut(s)	1400
SaqAI	TTAA	4 cut(s)	120, 600, 1374, 1756
SatI	GCNGC	4 cut(s)	338, 408, 921, 939
Sau3AI	GATC	4 cut(s)	814, 1000, 1031, 1559
Sau96I	GGNCC	2 cut(s)	1018, 1173
SchI	GAGTC	1 cut(s)	622
ScrFI	CCNGG	5 cut(s)	462, 680, 984, 1056, 1224
SduI	GDGCHC	5 cut(s)	68, 232, 1048, 1142, 1395
SexAI	ACCWGGT	1 cut(s)	1054
SfaNI	GCATC	7 cut(s)	64, 349, 538, 713, 1204, 1215, 1226
SinI	GGWCC	1 cut(s)	1018
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	2 cut(s)	1115, 1412
SmoI	CTYRAG	2 cut(s)	1115, 1412
SnaBI	TACGTA	1 cut(s)	364
SphI	GCATGC	1 cut(s)	374
Sse9I	AATT	5 cut(s)	183, 272, 547, 1049, 1275
SseBI	AGGCCT	2 cut(s)	309, 1452
SsiI	CCGC	3 cut(s)	149, 923, 1204
SspMI	CTAG	1 cut(s)	1739
SstI	GAGCTC	1 cut(s)	1395
StuI	AGGCCT	2 cut(s)	309, 1452
StyD4I	CCNGG	5 cut(s)	460, 678, 982, 1054, 1222
StyI	CCWWGG	2 cut(s)	198, 868
TaaI	ACNGT	5 cut(s)	234, 1166, 1306, 1576, 1645
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	48, 999
TasI	AATT	5 cut(s)	183, 272, 547, 1049, 1275
TatI	WGTACW	2 cut(s)	217, 610
TfiI	GAWTC	1 cut(s)	832
Tru1I	TTAA	4 cut(s)	120, 600, 1374, 1756
Tru9I	TTAA	4 cut(s)	120, 600, 1374, 1756
TseFI	GTSAC	3 cut(s)	91, 1366, 1576
TseI	GCWGC	4 cut(s)	337, 407, 920, 938
Tsp45I	GTSAC	3 cut(s)	91, 1366, 1576
TspDTI	ATGAA	6 cut(s)	282, 342, 500, 554, 824, 893
TspGWI	ACGGA	3 cut(s)	735, 1031, 1676
Van91I	CCANNNNNTGG	1 cut(s)	685
VneI	GTGCAC	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	1018
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	6 cut(s)	320, 374, 739, 1071, 1465, 1493
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1480
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	1739
Zsp2I	ATGCAT	2 cut(s)	728, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.