Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

16974187 .. 16974774

Gene Structure 588 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0192700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTACTACTGCATCATCCTCTGCTTCAGCCTGCCCTTCGTGATATTCGGGTTCATCTTCTTTCCCCAAGAGCCCAAATTCACAATCACCAATGCCACTCTAACCCAATTCAATTTCAACAGTTCCAACAACACCCTCGATTACAACCTCGCACTCAACATGACCATCAGAAACCCTAACAAGAGGGTTGGCATATATTACCGCCGCATCCAAGTCATTGGTAACTACCGAAAGAAGAGATTTTCTCTCGTCTCTTTGACTACTTTGCCGTTCTACCAAGGCCACAAAAACACCACCGATTTGCATCAACTGGTTGTTCAAGGGTCGCAACTGGTGAAGTTTGGAAAACGCGAGGTGTCCCAGTTTAACTCGGAGACTGCTTCCGGGATTTATAGTATAAACGTGCAGCTCGCTCTTCGGATAAAAGCCAGGTACGGCAAGTTCAAGTCGCGCAATTACAAGCCGTATAGGAAGATTGACTGCAGGCTGAAGGTTCCTTTGAGTTTTAATGAAACGTCAACGGCCATTGGTTTTAAGGCTACAAGGTGTGGAAATGTTCACTTCTTTTCAGATCCTGATGCAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

195

Amino Acids

22.59

Weight (kDa)

9.98

Isoelectric Point (pI)

25.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	54 - 149	2.6e-07	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	351, 451
AciI	CCGC	2 cut(s)	202, 205
AclWI	GGATC	1 cut(s)	566
AcoI	YGGCCR	1 cut(s)	522
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	2 cut(s)	10, 509
AfaI	GTAC	2 cut(s)	5, 434
AgsI	TTSAA	4 cut(s)	112, 118, 320, 445
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	1 cut(s)	409
AluI	AGCT	1 cut(s)	409
Alw26I	GTCTC	2 cut(s)	256, 368
AlwI	GGATC	1 cut(s)	566
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	2 cut(s)	280, 522
ApeKI	GCWGC	1 cut(s)	406
ApoI	RAATTY	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	453
AsuC2I	CCSGG	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	79, 346
BanII	GRGCYC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	4 cut(s)	253, 448, 451, 537
BciT130I	CCWGG	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	385
BcoDI	GTCTC	2 cut(s)	256, 368
BfmI	CTRYAG	1 cut(s)	481
BisI	GCNGC	2 cut(s)	205, 407
BlsI	GCNGC	2 cut(s)	206, 408
Bme1390I	CCNGG	2 cut(s)	385, 430
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	385, 430
BmrI	ACTGGG	1 cut(s)	355
BmsI	GCATC	4 cut(s)	21, 216, 313, 568
BmuI	ACTGGG	1 cut(s)	355
BplI	GAGNNNNNCTC	2 cut(s)	229, 261
BpuMI	CCSGG	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	315, 336, 361
Bse8I	GATNNNNATC	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	430
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	15, 207
BseJI	GATNNNNATC	1 cut(s)	303
BseNI	ACTGG	3 cut(s)	315, 336, 361
BseXI	GCAGC	1 cut(s)	418
BsgI	GTGCAG	1 cut(s)	425
Bsh1236I	CGCG	2 cut(s)	351, 451
BshFI	GGCC	2 cut(s)	282, 524
BsiSI	CCGG	1 cut(s)	384
BslFI	GGGAC	1 cut(s)	343
BsmAI	GTCTC	2 cut(s)	256, 368
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	282, 524
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	1 cut(s)	571
BspACI	CCGC	2 cut(s)	202, 205
BspANI	GGCC	2 cut(s)	282, 524
BspFNI	CGCG	2 cut(s)	351, 451
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	485
BspPI	GGATC	1 cut(s)	566
BspQI	GCTCTTC	1 cut(s)	420
BsrI	ACTGG	3 cut(s)	315, 336, 361
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	571
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	2 cut(s)	230, 420
BstC8I	GCNNGC	3 cut(s)	32, 411, 485
BstF5I	GGATG	2 cut(s)	15, 207
BstFNI	CGCG	2 cut(s)	351, 451
BstHHI	GCGC	1 cut(s)	453
BstKTI	GATC	1 cut(s)	574
BstMAI	GTCTC	2 cut(s)	256, 368
BstMBI	GATC	1 cut(s)	571
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	2 cut(s)	383, 428
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	2 cut(s)	351, 451
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	571
BstXI	CCANNNNNNTGG	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	571
BsuRI	GGCC	2 cut(s)	282, 524
BtsCI	GGATG	2 cut(s)	15, 207
Cac8I	GCNNGC	3 cut(s)	32, 411, 485
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	4, 433
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	9 cut(s)	30, 73, 282, 409, 428, 463, 487, 524, 539
CviKI_1	RGCY	9 cut(s)	30, 73, 282, 409, 428, 463, 487, 524, 539
CviQI	GTAC	2 cut(s)	4, 433
DpnI	GATC	1 cut(s)	573
DpnII	GATC	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	230, 420
EarI	CTCTTC	2 cut(s)	230, 420
Eco130I	CCWWGG	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	10, 509
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	1 cut(s)	163
FaiI	YATR	6 cut(s)	161, 194, 196, 393, 398, 468
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	205, 407
FokI	GGATG	2 cut(s)	2, 194
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	2 cut(s)	205, 407
GlaI	GCGC	1 cut(s)	452
GluI	GCNGC	2 cut(s)	205, 407
HaeIII	GGCC	2 cut(s)	282, 524
HapII	CCGG	1 cut(s)	384
HhaI	GCGC	1 cut(s)	453
Hin1II	CATG	1 cut(s)	163
Hin6I	GCGC	1 cut(s)	451
HinP1I	GCGC	1 cut(s)	451
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HpaII	CCGG	1 cut(s)	384
HphI	GGTGA	2 cut(s)	79, 346
Hpy166II	GTNNAC	2 cut(s)	519, 559
Hpy188I	TCNGA	4 cut(s)	170, 373, 420, 571
Hpy188III	TCNNGA	2 cut(s)	40, 575
Hpy8I	GTNNAC	2 cut(s)	519, 559
HpyAV	CCTTC	2 cut(s)	46, 484
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	402, 515
HpyCH4V	TGCA	5 cut(s)	12, 304, 406, 483, 581
HpySE526I	ACGT	2 cut(s)	402, 515
Hsp92II	CATG	1 cut(s)	163
HspAI	GCGC	1 cut(s)	451
Kzo9I	GATC	1 cut(s)	571
LguI	GCTCTTC	1 cut(s)	420
LpnPI	CCDG	8 cut(s)	44, 296, 317, 374, 397, 415, 442, 469
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	4 cut(s)	21, 216, 313, 568
MaeII	ACGT	2 cut(s)	402, 515
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	573
MboI	GATC	1 cut(s)	571
MboII	GAAGA	4 cut(s)	49, 247, 407, 484
MflI	RGATCY	1 cut(s)	571
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	4 cut(s)	77, 107, 112, 454
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	29, 146, 158, 177, 346
MseI	TTAA	4 cut(s)	366, 507, 534, 586
MspI	CCGG	1 cut(s)	384
MspR9I	CCNGG	2 cut(s)	385, 430
MvaI	CCWGG	1 cut(s)	430
MvnI	CGCG	2 cut(s)	351, 451
NciI	CCSGG	1 cut(s)	385
NdeII	GATC	1 cut(s)	571
NlaIII	CATG	1 cut(s)	163
NlaIV	GGNNCC	1 cut(s)	495
PciSI	GCTCTTC	1 cut(s)	420
PfoI	TCCNGGA	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	206, 408
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	495
PsrI	GAACNNNNNNTAC	2 cut(s)	425, 457
PstI	CTGCAG	1 cut(s)	485
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	571
RsaI	GTAC	2 cut(s)	5, 434
RsaNI	GTAC	2 cut(s)	4, 433
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	366, 507, 534, 586
SatI	GCNGC	2 cut(s)	205, 407
Sau3AI	GATC	1 cut(s)	571
ScrFI	CCNGG	2 cut(s)	385, 430
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	8 cut(s)	150, 357, 405, 411, 434, 495, 518, 548
SfaNI	GCATC	4 cut(s)	21, 216, 313, 568
SfcI	CTRYAG	1 cut(s)	481
Sse9I	AATT	4 cut(s)	77, 107, 112, 454
SsiI	CCGC	2 cut(s)	202, 205
StyD4I	CCNGG	2 cut(s)	383, 428
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	405, 518
TaqI	TCGA	1 cut(s)	138
TasI	AATT	4 cut(s)	77, 107, 112, 454
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	207
Tru1I	TTAA	4 cut(s)	366, 507, 534, 586
Tru9I	TTAA	4 cut(s)	366, 507, 534, 586
TseI	GCWGC	1 cut(s)	406
TspDTI	ATGAA	2 cut(s)	43, 525
XapI	RAATTY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.