Rmu_sc0021936.1_g000002

Raffinose synthase or seed imbibition protein Sip1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021936.1
OG0000881
Physical Location & Seq
Forward (+)
1668 .. 3950
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021936.1_g000002.1.cds

Sequence Viewer

Length: 1173 bp
atgacaaaaagggagacatggatctcgaatgtaaaatgtggtgagcaatcaaaggaagaggcattggagcccatcccaccacctctctatcaatcaatcatctttgtgggattgggaaccaaccaacttaaaccaaccacacagattgccctgccctgccatgcccttctcctctcctcccgctttcatataacggtcaaaaagctgttgccttgccaattgccaattgccatgcttcacagcaccgtcgtttcccccaaggcccttcaactcaatctcggcttctcttcatttctagccacaaaccagaaccagagcaggaggaggaggaggaggatcatcttttgttcacaaaccagagatggttctgtgcgtggtggagttaagactagcactaccagtagtaatggatggagtcaatctatgtttgtcggtacgaaacctgcccttgaagattccattctgagtgtcagtggtaaacatgtgttgacagacgtgcctcccaatgtggtctttcatctttttacgaaacctgcccttgaagattccattctgagtgtcagtggtaaacatgtgttgacagacgtgcctcccaatgtggtcttcacaccaattcccaactcatcggcagcattccttggcgccacttctcaaaatgctacttcacaatcacgccatgtttttaagctcggagtcttacgtgatgtcagattattaagtctttttagatttaaactttggtggatgataccacgagtgggcagtacaggaagtgacatccctgtggaaactcagctgttgctcctagaagcaaaggagaaggagggaaaggaagatagtacatcttatatcttattcttgccagttctggatggtgaatttagaagcagcttgcagggaaatacatccaatgaacttgagttttgcgtcgaaagtggtgaccccgctatagttgcctcagaatccctaaaagcagtttttgtgaattgtgggaaccatcctttcgatctggtgaacgaatctatgaagactttggcgaagcattatggaagctttgctcttagagaaacgaaacagatgcctggaatgctggattgttttggctggtgtacttgggatgccttttatcaaggagttaaccctaaaggaattagagacggcctcagaaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00052 map00052
Pfam Domains
Protein Families
Raffinose_syn

Protein Analysis

390

Amino Acids

43.09

Weight (kDa)

9.16

Isoelectric Point (pI)

50.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 451, 541
AccB1I GGYRCC 1 cut(s) 641
AciI CCGC 2 cut(s) 181, 945
AclWI GGATC 2 cut(s) 29, 344
AcsI RAATTY 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 642
AfaI GTAC 4 cut(s) 436, 766, 841, 1111
AfiI CCNNNNNNNGG 1 cut(s) 758
AflIII ACRYGT 2 cut(s) 481, 571
AgsI TTSAA 3 cut(s) 269, 452, 542
AjiI CACGTC 2 cut(s) 496, 586
AjnI CCWGG 1 cut(s) 1081
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 5 cut(s) 205, 688, 796, 891, 1053
AluI AGCT 5 cut(s) 205, 688, 796, 891, 1053
Alw26I GTCTC 2 cut(s) 8, 1149
AlwI GGATC 2 cut(s) 29, 344
AoxI GGCC 2 cut(s) 261, 1159
ApeKI GCWGC 2 cut(s) 629, 888
ApoI RAATTY 1 cut(s) 878
AspLEI GCGC 1 cut(s) 644
AspS9I GGNCC 1 cut(s) 262
AsuHPI GGTGA 4 cut(s) 53, 887, 950, 1024
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 72
BauI CACGAG 1 cut(s) 753
BbsI GAAGAC 2 cut(s) 595, 1034
BbvI GCAGC 2 cut(s) 641, 900
BccI CCATC 5 cut(s) 80, 356, 405, 866, 1005
BcgI CGANNNNNNTGC 2 cut(s) 1060, 1094
BciT130I CCWGG 1 cut(s) 1083
BcoDI GTCTC 2 cut(s) 8, 1149
BfaI CTAG 3 cut(s) 296, 390, 806
BfmI CTRYAG 1 cut(s) 948
BfoI RGCGCY 1 cut(s) 645
BfuAI ACCTGC 2 cut(s) 451, 541
BisI GCNGC 2 cut(s) 630, 889
BlsI GCNGC 2 cut(s) 631, 890
Bme1390I CCNGG 1 cut(s) 1083
BmgBI CACGTC 2 cut(s) 496, 586
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 69, 118, 643, 995
BmrFI CCNGG 1 cut(s) 1083
BmsI GCATC 2 cut(s) 1068, 1108
BpiI GAAGAC 2 cut(s) 595, 1034
BplI GAGNNNNNCTC 1 cut(s) 1146
BpuEI CTTGAG 1 cut(s) 938
BsaAI YACGTR 1 cut(s) 701
BsaHI GRCGYC 1 cut(s) 642
BsaJI CCNNGG 2 cut(s) 258, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 758
Bse1I ACTGG 2 cut(s) 399, 863
BseBI CCWGG 1 cut(s) 1083
BseDI CCNNGG 2 cut(s) 258, 637
BseGI GGATG 8 cut(s) 72, 416, 750, 777, 877, 905, 997, 1123
BseLI CCNNNNNNNGG 1 cut(s) 758
BseMII CTCAG 4 cut(s) 455, 545, 806, 972
BseNI ACTGG 2 cut(s) 399, 863
BseRI GAGGAG 6 cut(s) 161, 166, 337, 340, 343, 346
BseXI GCAGC 2 cut(s) 641, 900
BshFI GGCC 2 cut(s) 263, 1161
BshNI GGYRCC 1 cut(s) 641
BslI CCNNNNNNNGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 8, 1149
BsmBI CGTCTC 1 cut(s) 1149
BsmI GAATGC 2 cut(s) 632, 1092
BsnI GGCC 2 cut(s) 263, 1161
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 3 cut(s) 21, 336, 1006
BspACI CCGC 2 cut(s) 181, 945
BspANI GGCC 2 cut(s) 263, 1161
BspCNI CTCAG 4 cut(s) 456, 546, 805, 971
BspLI GGNNCC 4 cut(s) 69, 118, 643, 995
BspMI ACCTGC 2 cut(s) 451, 541
BspPI GGATC 2 cut(s) 29, 344
BspT107I GGYRCC 1 cut(s) 641
BsrI ACTGG 2 cut(s) 399, 863
BssECI CCNNGG 2 cut(s) 258, 637
BssMI GATC 3 cut(s) 21, 336, 1006
BssNI GRCGYC 1 cut(s) 642
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 2 cut(s) 258, 637
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 1 cut(s) 1083
Bst4CI ACNGT 2 cut(s) 196, 247
Bst6I CTCTTC 2 cut(s) 51, 292
BstACI GRCGYC 1 cut(s) 642
BstBAI YACGTR 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 6 cut(s) 464, 554, 792, 958, 1061, 1163
BstEII GGTNACC 1 cut(s) 938
BstF5I GGATG 8 cut(s) 72, 416, 750, 777, 877, 905, 997, 1123
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 1 cut(s) 644
BstKTI GATC 3 cut(s) 24, 339, 1009
BstMAI GTCTC 2 cut(s) 8, 1149
BstMBI GATC 3 cut(s) 21, 336, 1006
BstMWI GCNNNNNNNGC 2 cut(s) 953, 1087
BstNI CCWGG 1 cut(s) 1083
BstNSI RCATGY 2 cut(s) 485, 575
BstPI GGTNACC 1 cut(s) 938
BstSCI CCNGG 1 cut(s) 1081
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 641, 900
BstV2I GAAGAC 2 cut(s) 595, 1034
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 2 cut(s) 263, 1161
BtrI CACGTC 2 cut(s) 496, 586
BtsCI GGATG 8 cut(s) 72, 416, 750, 777, 877, 905, 997, 1123
BtsIMutI CAGTG 2 cut(s) 478, 568
BveI ACCTGC 2 cut(s) 451, 541
Cac8I GCNNGC 1 cut(s) 893
CfoI GCGC 1 cut(s) 644
Cfr13I GGNCC 1 cut(s) 262
CseI GACGC 1 cut(s) 916
Csp6I GTAC 4 cut(s) 435, 765, 840, 1110
CspCI CAANNNNNGTGG 2 cut(s) 127, 162
CviAII CATG 6 cut(s) 18, 161, 232, 482, 572, 677
CviQI GTAC 4 cut(s) 435, 765, 840, 1110
DdeI CTNAG 6 cut(s) 464, 554, 792, 958, 1061, 1163
DinI GGCGCC 1 cut(s) 643
DpnI GATC 3 cut(s) 23, 338, 1008
DpnII GATC 3 cut(s) 21, 336, 1006
DraI TTTAAA 1 cut(s) 733
Eam1104I CTCTTC 2 cut(s) 51, 292
EarI CTCTTC 2 cut(s) 51, 292
Eco130I CCWWGG 2 cut(s) 258, 637
Eco24I GRGCYC 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 938
EcoO109I RGGNCCY 1 cut(s) 262
EcoO65I GGTNACC 1 cut(s) 938
EcoRII CCWGG 1 cut(s) 1081
EcoT14I CCWWGG 2 cut(s) 258, 637
EcoT38I GRGCYC 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 643
EheI GGCGCC 1 cut(s) 643
ErhI CCWWGG 2 cut(s) 258, 637
Esp3I CGTCTC 1 cut(s) 1149
FaeI CATG 6 cut(s) 21, 164, 235, 485, 575, 680
FatI CATG 6 cut(s) 17, 160, 231, 481, 571, 676
FauI CCCGC 2 cut(s) 188, 952
Fnu4HI GCNGC 2 cut(s) 630, 889
FokI GGATG 8 cut(s) 59, 423, 757, 764, 884, 892, 984, 1130
FriOI GRGCYC 1 cut(s) 72
Fsp4HI GCNGC 2 cut(s) 630, 889
FspBI CTAG 3 cut(s) 296, 390, 806
GlaI GCGC 1 cut(s) 643
GluI GCNGC 2 cut(s) 630, 889
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 2 cut(s) 263, 1161
HgaI GACGC 1 cut(s) 916
HhaI GCGC 1 cut(s) 644
Hin1I GRCGYC 1 cut(s) 642
Hin1II CATG 6 cut(s) 21, 164, 235, 485, 575, 680
Hin6I GCGC 1 cut(s) 642
HinP1I GCGC 1 cut(s) 642
HincII GTYRAC 3 cut(s) 489, 579, 1138
HindII GTYRAC 3 cut(s) 489, 579, 1138
HindIII AAGCTT 1 cut(s) 1051
HinfI GANTC 6 cut(s) 415, 455, 545, 693, 962, 1019
HpaI GTTAAC 1 cut(s) 1138
HphI GGTGA 4 cut(s) 53, 887, 950, 1024
Hpy166II GTNNAC 8 cut(s) 350, 479, 489, 569, 579, 1015, 1110, 1138
Hpy188I TCNGA 6 cut(s) 465, 555, 692, 710, 961, 1166
Hpy188III TCNNGA 2 cut(s) 25, 869
Hpy8I GTNNAC 8 cut(s) 350, 479, 489, 569, 579, 1015, 1110, 1138
Hpy99I CGWCG 2 cut(s) 251, 932
HpyAV CCTTC 4 cut(s) 176, 275, 814, 1161
HpyCH4III ACNGT 2 cut(s) 196, 247
HpyCH4IV ACGT 3 cut(s) 495, 585, 700
HpyCH4V TGCA 1 cut(s) 895
HpyF10VI GCNNNNNNNGC 2 cut(s) 953, 1087
HpyF3I CTNAG 6 cut(s) 464, 554, 792, 958, 1061, 1163
HpySE526I ACGT 3 cut(s) 495, 585, 700
Hsp92I GRCGYC 1 cut(s) 642
Hsp92II CATG 6 cut(s) 21, 164, 235, 485, 575, 680
HspAI GCGC 1 cut(s) 642
KasI GGCGCC 1 cut(s) 641
KspAI GTTAAC 1 cut(s) 1138
Kzo9I GATC 3 cut(s) 21, 336, 1006
LmnI GCTCC 2 cut(s) 67, 807
Lsp1109I GCAGC 2 cut(s) 641, 900
LweI GCATC 2 cut(s) 1068, 1108
MaeI CTAG 3 cut(s) 296, 390, 806
MaeII ACGT 3 cut(s) 495, 585, 700
MaeIII GTNAC 2 cut(s) 773, 938
MalI GATC 3 cut(s) 23, 338, 1008
MboI GATC 3 cut(s) 21, 336, 1006
MboII GAAGA 7 cut(s) 68, 279, 464, 554, 595, 845, 1039
MfeI CAATTG 2 cut(s) 218, 225
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 6 cut(s) 218, 225, 612, 878, 985, 1149
Mly113I GGCGCC 1 cut(s) 642
MlyI GAGTC 2 cut(s) 424, 702
MseI TTAA 6 cut(s) 129, 384, 684, 716, 732, 1137
MslI CAYNNNNRTG 2 cut(s) 104, 782
MspA1I CMGCKG 1 cut(s) 796
MspR9I CCNGG 1 cut(s) 1083
MunI CAATTG 2 cut(s) 218, 225
Mva1269I GAATGC 2 cut(s) 632, 1092
MvaI CCWGG 1 cut(s) 1083
MwoI GCNNNNNNNGC 2 cut(s) 953, 1087
NarI GGCGCC 1 cut(s) 642
NdeII GATC 3 cut(s) 21, 336, 1006
NlaIII CATG 6 cut(s) 21, 164, 235, 485, 575, 680
NlaIV GGNNCC 4 cut(s) 69, 118, 643, 995
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 2 cut(s) 773, 938
NspI RCATGY 2 cut(s) 485, 575
PciI ACATGT 2 cut(s) 481, 571
PctI GAATGC 2 cut(s) 632, 1092
PfeI GAWTC 4 cut(s) 455, 545, 962, 1019
PkrI GCNGC 2 cut(s) 631, 890
PleI GAGTC 2 cut(s) 423, 701
PluTI GGCGCC 1 cut(s) 645
PpsI GAGTC 2 cut(s) 423, 701
Ppu21I YACGTR 1 cut(s) 701
PscI ACATGT 2 cut(s) 481, 571
Psp6I CCWGG 1 cut(s) 1081
PspEI GGTNACC 1 cut(s) 938
PspGI CCWGG 1 cut(s) 1081
PspN4I GGNNCC 4 cut(s) 69, 118, 643, 995
PspPI GGNCC 1 cut(s) 262
PsuI RGATCY 1 cut(s) 21
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 4 cut(s) 436, 766, 841, 1111
RsaNI GTAC 4 cut(s) 435, 765, 840, 1110
RseI CAYNNNNRTG 2 cut(s) 104, 782
SaqAI TTAA 6 cut(s) 129, 384, 684, 716, 732, 1137
SatI GCNGC 2 cut(s) 630, 889
Sau3AI GATC 3 cut(s) 21, 336, 1006
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 2 cut(s) 424, 702
ScrFI CCNGG 1 cut(s) 1083
SduI GDGCHC 1 cut(s) 72
SfaNI GCATC 2 cut(s) 1068, 1108
SfcI CTRYAG 1 cut(s) 948
SfoI GGCGCC 1 cut(s) 643
SmiMI CAYNNNNRTG 2 cut(s) 104, 782
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 6 cut(s) 218, 225, 612, 878, 985, 1149
SsiI CCGC 2 cut(s) 181, 945
SspDI GGCGCC 1 cut(s) 641
SspMI CTAG 3 cut(s) 296, 390, 806
StyD4I CCNGG 1 cut(s) 1081
StyI CCWWGG 2 cut(s) 258, 637
TaaI ACNGT 2 cut(s) 196, 247
TaiI ACGT 3 cut(s) 498, 588, 703
TaqI TCGA 3 cut(s) 26, 930, 1005
TasI AATT 6 cut(s) 218, 225, 612, 878, 985, 1149
TatI WGTACW 3 cut(s) 764, 839, 1109
TfiI GAWTC 4 cut(s) 455, 545, 962, 1019
Tru1I TTAA 6 cut(s) 129, 384, 684, 716, 732, 1137
Tru9I TTAA 6 cut(s) 129, 384, 684, 716, 732, 1137
TscAI CASTG 2 cut(s) 478, 568
TseFI GTSAC 2 cut(s) 773, 938
TseI GCWGC 2 cut(s) 629, 888
Tsp45I GTSAC 2 cut(s) 773, 938
TspDTI ATGAA 5 cut(s) 176, 279, 506, 927, 1040
TspRI CASTG 2 cut(s) 478, 568
XapI RAATTY 1 cut(s) 878
XceI RCATGY 2 cut(s) 485, 575
XspI CTAG 3 cut(s) 296, 390, 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.