Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Reverse (-)

16976705 .. 16977196

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0192800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGTCTCGTCACCAAACATTCTGTTGCCTTGAAATTACTACCGGGAGTTGTTTCATTAGAACTCGACGGAACCTTCAACAGACACATCCCTACTGGTTTGTAAACGATTCCTTTGAGAACCCGGCGGCTTATCCGAAAAGAAAACTGCAGGTCAATACTGTAAATGCCTGCATTGGTCTCCAGGCTAGAGGGTTGCCCTTGAAGAACTGGATGCAGAATGGTTATGTTCTTGGTTCCTTGGTCAAAGGGTGGCGAACTCAAAGTCACCAAAGCAAATTTCTGCTCCCTATATTTCGCCGTGACTTCGATGCGATTGTAGTGTACACTGAAGGTTGGGCTAGGGTTTCTGATGGCGACATCGAGGGCGAGGTTGTAGTAGAGAGTGTTGTTGTTGCTGTTGAGATTGAATTGGGTCATAGACGCATTGGTGACTGTTACTTCGAGCTTGGGAGATCTAGGGAAGATGACTACGAATGCTATGACTCCGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

163

Amino Acids

18.77

Weight (kDa)

6.42

Isoelectric Point (pI)

65.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	139
AciI	CCGC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	348
AfaI	GTAC	1 cut(s)	323
AgsI	TTSAA	4 cut(s)	32, 77, 202, 407
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	445
AluI	AGCT	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	9, 182
ApoI	RAATTY	1 cut(s)	275
ArsI	GACNNNNNNTTYG	4 cut(s)	247, 279, 422, 454
AsuC2I	CCSGG	2 cut(s)	43, 122
AsuHPI	GGTGA	2 cut(s)	257, 440
BccI	CCATC	1 cut(s)	344
BceAI	ACGGC	1 cut(s)	282
BciT130I	CCWGG	1 cut(s)	182
BcnI	CCSGG	2 cut(s)	43, 122
BcoDI	GTCTC	2 cut(s)	9, 182
BfaI	CTAG	3 cut(s)	186, 339, 456
BfmI	CTRYAG	1 cut(s)	146
BfuAI	ACCTGC	1 cut(s)	139
BglII	AGATCT	1 cut(s)	452
BisI	GCNGC	1 cut(s)	126
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	3 cut(s)	43, 122, 182
BmiI	GGNNCC	2 cut(s)	71, 235
BmrFI	CCNGG	3 cut(s)	43, 122, 182
BmsI	GCATC	2 cut(s)	201, 298
BpmI	CTGGAG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	43, 122
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	237
Bse1I	ACTGG	2 cut(s)	98, 212
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	85, 216
BseNI	ACTGG	2 cut(s)	98, 212
BsiSI	CCGG	3 cut(s)	42, 122, 486
BsmAI	GTCTC	2 cut(s)	9, 182
BsmI	GAATGC	1 cut(s)	479
Bso31I	GGTCTC	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	321
Bsp143I	GATC	1 cut(s)	452
BspACI	CCGC	1 cut(s)	125
BspLI	GGNNCC	2 cut(s)	71, 235
BspMAI	CTGCAG	1 cut(s)	150
BspMI	ACCTGC	1 cut(s)	139
BspTNI	GGTCTC	1 cut(s)	182
BsrGI	TGTACA	1 cut(s)	321
BsrI	ACTGG	2 cut(s)	98, 212
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	452
BssT1I	CCWWGG	1 cut(s)	237
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	160, 434
BstAUI	TGTACA	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	85, 216
BstKTI	GATC	1 cut(s)	455
BstMAI	GTCTC	2 cut(s)	9, 182
BstMBI	GATC	1 cut(s)	452
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	41, 120, 180
BstSFI	CTRYAG	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BtsCI	GGATG	2 cut(s)	85, 216
BtsIMutI	CAGTG	1 cut(s)	324
BveI	ACCTGC	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	169
CseI	GACGC	1 cut(s)	429
Csp6I	GTAC	1 cut(s)	322
CviJI	RGCY	5 cut(s)	128, 185, 338, 445, 489
CviKI_1	RGCY	5 cut(s)	128, 185, 338, 445, 489
CviQI	GTAC	1 cut(s)	322
DpnI	GATC	1 cut(s)	454
DpnII	GATC	1 cut(s)	452
Eco130I	CCWWGG	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	348
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	237
ErhI	CCWWGG	1 cut(s)	237
FaiI	YATR	4 cut(s)	225, 290, 417, 480
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	2 cut(s)	72, 223
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	186, 339, 456
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	164
HapII	CCGG	3 cut(s)	42, 122, 486
HgaI	GACGC	1 cut(s)	429
HinfI	GANTC	2 cut(s)	107, 482
HpaII	CCGG	3 cut(s)	42, 122, 486
HphI	GGTGA	2 cut(s)	257, 440
Hpy166II	GTNNAC	3 cut(s)	103, 322, 324
Hpy188I	TCNGA	2 cut(s)	135, 349
Hpy8I	GTNNAC	3 cut(s)	103, 322, 324
Hpy99I	CGWCG	1 cut(s)	69
HpyAV	CCTTC	2 cut(s)	83, 323
HpyCH4III	ACNGT	2 cut(s)	160, 434
HpyCH4V	TGCA	3 cut(s)	148, 171, 214
Kzo9I	GATC	1 cut(s)	452
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	8 cut(s)	55, 79, 134, 135, 167, 181, 193, 194
LweI	GCATC	2 cut(s)	201, 298
MaeI	CTAG	3 cut(s)	186, 339, 456
MaeIII	GTNAC	5 cut(s)	8, 263, 299, 428, 434
MalI	GATC	1 cut(s)	454
MboI	GATC	1 cut(s)	452
MboII	GAAGA	2 cut(s)	214, 473
MflI	RGATCY	1 cut(s)	452
MluCI	AATT	3 cut(s)	33, 275, 407
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	3 cut(s)	182, 355, 361
MspI	CCGG	3 cut(s)	42, 122, 486
MspR9I	CCNGG	3 cut(s)	43, 122, 182
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	182
NciI	CCSGG	2 cut(s)	43, 122
NdeII	GATC	1 cut(s)	452
NlaIV	GGNNCC	2 cut(s)	71, 235
NmuCI	GTSAC	4 cut(s)	8, 263, 299, 428
PctI	GAATGC	1 cut(s)	479
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	71, 235
PstI	CTGCAG	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	452
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	43, 122, 182
SetI	ASST	5 cut(s)	75, 153, 334, 372, 447
SfaNI	GCATC	2 cut(s)	201, 298
SfcI	CTRYAG	1 cut(s)	146
Sse9I	AATT	3 cut(s)	33, 275, 407
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	3 cut(s)	186, 339, 456
StyD4I	CCNGG	3 cut(s)	41, 120, 180
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	2 cut(s)	160, 434
TaqI	TCGA	4 cut(s)	64, 306, 360, 441
TasI	AATT	3 cut(s)	33, 275, 407
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	4 cut(s)	8, 263, 299, 428
Tsp45I	GTSAC	4 cut(s)	8, 263, 299, 428
TspDTI	ATGAA	1 cut(s)	43
TspGWI	ACGGA	1 cut(s)	82
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	1 cut(s)	275
XspI	CTAG	3 cut(s)	186, 339, 456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.