Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

5783320 .. 5783984

Gene Structure 665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGCATAAGTTTGGTATTTCTGTGAATAGTGATAAGCCAGGCAATCACAATTTTGACCTTCTAAGGAAGCTGGTTCTCCCTGATGGATCTGTCCTCCGTGCCAAGTTACCTGGCAGGCCTACACGTGATTGTCTCTTCGCTGATCCAGCAAGAGACAGGACAAGCTTGCTCAAAATATGGAATGTCAACAATCTCTCTGGTGTGGTTGGTGTGTTTAACTGTCAAGGTGCCGGTTGGTGCAAGATTGAAAAGAAGACACGCATTCATGATTACTCTCCCGGTACCCTCAGTGGTTCTGTTCGTGCCGCTGATGTCGACGCCATTGCTCAAGTTGCTGGTGCTGATTGGAATGGAGAAACAGTAGTTTATGCTCATAAGTCAGGTACCACTACTTTGTTTACAGAAGCTAGTTTGAAGGAACACTTCAGATTGCCATGGAAGCAGCAGAGTTCTCTAATAACGTGTCAATATGATAATGGCGAAGTTTTAAGAAGAAATCTACCTGCCCTTGTTATGAATCGTAACATTATTCTCATAGTATTCCTGCTCTTCAACTTTATAACGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

190

Amino Acids

21.02

Weight (kDa)

9.44

Isoelectric Point (pI)

34.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	10 - 133	3.5e-53	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	560
Acc36I	ACCTGC	1 cut(s)	511
Acc65I	GGTACC	2 cut(s)	281, 383
AccB1I	GGYRCC	3 cut(s)	227, 281, 383
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	2 cut(s)	94, 137
AcuI	CTGAAG	1 cut(s)	409
AcvI	CACGTG	1 cut(s)	125
AcyI	GRCGYC	1 cut(s)	318
AfaI	GTAC	2 cut(s)	283, 385
AflIII	ACRYGT	2 cut(s)	122, 461
AgsI	TTSAA	3 cut(s)	248, 415, 553
AjnI	CCWGG	2 cut(s)	37, 109
AluBI	AGCT	3 cut(s)	70, 165, 407
AluI	AGCT	3 cut(s)	70, 165, 407
Alw26I	GTCTC	2 cut(s)	137, 147
AlwI	GGATC	2 cut(s)	94, 137
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	442
Asp718I	GGTACC	2 cut(s)	281, 383
AsuC2I	CCSGG	1 cut(s)	279
BanI	GGYRCC	3 cut(s)	227, 281, 383
BbrPI	CACGTG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	454
BccI	CCATC	1 cut(s)	77
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciT130I	CCWGG	2 cut(s)	39, 111
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	137, 147
BfaI	CTAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	511
BisI	GCNGC	2 cut(s)	306, 443
BlsI	GCNGC	2 cut(s)	307, 444
Bme1390I	CCNGG	3 cut(s)	39, 111, 279
BmiI	GGNNCC	3 cut(s)	229, 283, 385
BmrFI	CCNGG	3 cut(s)	39, 111, 279
BpiI	GAAGAC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	279
BsaAI	YACGTR	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	434
BsaXI	ACNNNNNCTCC	2 cut(s)	345, 375
Bse118I	RCCGGY	1 cut(s)	230
Bse3DI	GCAATG	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	39, 111
BseDI	CCNNGG	1 cut(s)	434
BseMI	GCAATG	1 cut(s)	321
BseMII	CTCAG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	454
BshFI	GGCC	1 cut(s)	118
BshNI	GGYRCC	3 cut(s)	227, 281, 383
BsiSI	CCGG	2 cut(s)	231, 279
BsmAI	GTCTC	2 cut(s)	137, 147
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	86, 142
Bsp19I	CCATGG	1 cut(s)	434
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	300
BspHI	TCATGA	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	229, 283, 385
BspMI	ACCTGC	1 cut(s)	511
BspPI	GGATC	2 cut(s)	94, 137
BspQI	GCTCTTC	1 cut(s)	554
BspT107I	GGYRCC	3 cut(s)	227, 281, 383
BsrDI	GCAATG	1 cut(s)	321
BsrFI	RCCGGY	1 cut(s)	230
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	2 cut(s)	86, 142
BssNI	GRCGYC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	39, 111
Bst4CI	ACNGT	2 cut(s)	221, 361
Bst6I	CTCTTC	2 cut(s)	140, 554
BstACI	GRCGYC	1 cut(s)	318
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	116, 167
BstDEI	CTNAG	2 cut(s)	62, 287
BstDSI	CCRYGG	1 cut(s)	434
BstKTI	GATC	2 cut(s)	89, 145
BstMAI	GTCTC	2 cut(s)	137, 147
BstMBI	GATC	2 cut(s)	86, 142
BstMWI	GCNNNNNNNGC	3 cut(s)	146, 332, 439
BstNI	CCWGG	2 cut(s)	39, 111
BstSCI	CCNGG	3 cut(s)	37, 109, 277
BstV1I	GCAGC	1 cut(s)	454
BstV2I	GAAGAC	1 cut(s)	260
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	434
BtsIMutI	CAGTG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	511
Cac8I	GCNNGC	2 cut(s)	116, 167
CciI	TCATGA	1 cut(s)	265
Cfr10I	RCCGGY	1 cut(s)	230
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	282, 384
CviAII	CATG	2 cut(s)	266, 435
CviJI	RGCY	5 cut(s)	37, 70, 118, 165, 407
CviKI_1	RGCY	5 cut(s)	37, 70, 118, 165, 407
CviQI	GTAC	2 cut(s)	282, 384
DdeI	CTNAG	2 cut(s)	62, 287
DpnI	GATC	2 cut(s)	88, 144
DpnII	GATC	2 cut(s)	86, 142
Eam1104I	CTCTTC	2 cut(s)	140, 554
EarI	CTCTTC	2 cut(s)	140, 554
Eco130I	CCWWGG	1 cut(s)	434
Eco147I	AGGCCT	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	409
Eco72I	CACGTG	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	37, 109
EcoT14I	CCWWGG	1 cut(s)	434
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	2 cut(s)	269, 438
FalI	AAGNNNNNCTT	2 cut(s)	407, 439
FatI	CATG	2 cut(s)	265, 434
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	2 cut(s)	306, 443
Fsp4HI	GCNGC	2 cut(s)	306, 443
FspBI	CTAG	1 cut(s)	408
GluI	GCNGC	2 cut(s)	306, 443
HaeIII	GGCC	1 cut(s)	118
HapII	CCGG	2 cut(s)	231, 279
HgaI	GACGC	1 cut(s)	326
Hin1I	GRCGYC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	269, 438
HincII	GTYRAC	2 cut(s)	187, 316
HindII	GTYRAC	2 cut(s)	187, 316
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	1 cut(s)	517
HpaII	CCGG	2 cut(s)	231, 279
Hpy166II	GTNNAC	3 cut(s)	187, 316, 399
Hpy188I	TCNGA	1 cut(s)	428
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	3 cut(s)	187, 316, 399
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	68, 409
HpyCH4III	ACNGT	2 cut(s)	221, 361
HpyCH4IV	ACGT	2 cut(s)	124, 461
HpyCH4V	TGCA	2 cut(s)	4, 240
HpyF10VI	GCNNNNNNNGC	3 cut(s)	146, 332, 439
HpyF3I	CTNAG	2 cut(s)	62, 287
HpySE526I	ACGT	2 cut(s)	124, 461
Hsp92I	GRCGYC	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	269, 438
KpnI	GGTACC	2 cut(s)	285, 387
Kzo9I	GATC	2 cut(s)	86, 142
LguI	GCTCTTC	1 cut(s)	554
Lsp1109I	GCAGC	1 cut(s)	454
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	2 cut(s)	124, 461
MaeIII	GTNAC	2 cut(s)	105, 521
MalI	GATC	2 cut(s)	88, 144
MboI	GATC	2 cut(s)	86, 142
MboII	GAAGA	4 cut(s)	127, 265, 504, 541
MflI	RGATCY	1 cut(s)	86
MluCI	AATT	1 cut(s)	49
MnlI	CCTC	2 cut(s)	104, 296
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	216, 488
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	2 cut(s)	231, 279
MspR9I	CCNGG	3 cut(s)	39, 111, 279
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	2 cut(s)	39, 111
MwoI	GCNNNNNNNGC	3 cut(s)	146, 332, 439
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	1 cut(s)	434
NdeII	GATC	2 cut(s)	86, 142
NlaIII	CATG	2 cut(s)	269, 438
NlaIV	GGNNCC	3 cut(s)	229, 283, 385
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	265
PceI	AGGCCT	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	554
PctI	GAATGC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	517
PkrI	GCNGC	2 cut(s)	307, 444
PmaCI	CACGTG	1 cut(s)	125
PmlI	CACGTG	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	560
Psp6I	CCWGG	2 cut(s)	37, 109
PspCI	CACGTG	1 cut(s)	125
PspGI	CCWGG	2 cut(s)	37, 109
PspN4I	GGNNCC	3 cut(s)	229, 283, 385
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	2 cut(s)	283, 385
RsaNI	GTAC	2 cut(s)	282, 384
SalI	GTCGAC	1 cut(s)	314
SapI	GCTCTTC	1 cut(s)	554
SaqAI	TTAA	2 cut(s)	216, 488
SatI	GCNGC	2 cut(s)	306, 443
Sau3AI	GATC	2 cut(s)	86, 142
ScrFI	CCNGG	3 cut(s)	39, 111, 279
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	49
SseBI	AGGCCT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	408
StuI	AGGCCT	1 cut(s)	118
StyD4I	CCNGG	3 cut(s)	37, 109, 277
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	221, 361
TaiI	ACGT	2 cut(s)	127, 464
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	49
TauI	GCSGC	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	517
Tru1I	TTAA	2 cut(s)	216, 488
Tru9I	TTAA	2 cut(s)	216, 488
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	254, 530
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	295
XmiI	GTMKAC	1 cut(s)	315
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.