Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

27490784 .. 27499079

Gene Structure 8296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG279300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGTGCTGTTTCCGGTTTAAGCTATGGTGGATGACGCAGAGGATGAGGTCATGTGGGAAAGAAGTTCCACTGGAGACCCAATTCATGCTTGTGGAGACCAAGGATGATGGTGAAGGAAGTGATGGGTCCTCCACCATTTACACCGTCTTCCTTCCTCTGCTGGAGGGCCAGTTCTATTCGATTCTGCAAGGGAACGAGCGGAATGAAGTGGAGATATGCCTCGAGAGTGGAGATTCTGATGTTCAGACCAATCAAGGTCTTTGCCTTGTTTACGTGCATGCTGGAACTAATCCATTTGAAGTTATCAACCAGGCTGTAAAGGCTGTAGAGAAACACATGCAAACCTTTGTCCATCGTGAGAAGAAAAAGTTGCCTTCTTTCCTCGTCTGGTTTGGCTGGTGCACATGGGATGCTTTCTATACCGATGTCACAGCTGAGGGTGTCGTGGATGATGATGGTTGGCAACAAATTGAAAGTAAACCCAAGGATACTAATGTTGCAGTACAAGAAGGAGCACAGTTTGCAAGTAGGCTTACAGGAATAAGAGAGAATGAAAAATTCCAAAAGAATGGACAGAGTGAGCAAGTCTCAGGCCTGAAACATGTTGTTGATGAAGCGAAGCAGCATCACAATGTGAAGTTTGTGTATGTATGGCATGCCTTAATTGGGTACTGGGGTGGAGTGAAACCAGCTGCTTCTGGCATGGAGCATTATGACACTGCTTTGGCATATCCAGTCTCATCTCCTGGTGTGATGGGAAACCAACCTGACATAGTTTTTGACAGCTTATCTGTTCACGGTCTTGGTTTGGTGCATCCAAAGAAAGTTTTCAATTTCTACAATGAGCTTCATGCGTATTTGGCTTCCTATGGAGTGGATGAAGTTAAGGCCCTTGAGGCTTCGGTTGCTCGGAACTTTCCTGACAACGGATGCATTTCTTGCATGTGTCATAACACTGATGGGCTATATAGTTCCAAGCAGACTGCTGTTGTGAGAGCTTCTGATGACTTCTACCCACGGGATCCTGCTTCTCACACGATTCATATATCTTCTGTGGCTTATAACACCCTTTTCCTTGGCGAGTTTATGCAACCAGACTGGGATATGTTTCATAGTTTACATCCAGCAGCGGATTATCATGGTGCAGCTCGTTCTATTGGTGGATGTGCAATCTATGTCAGTGATAAACCTGGAAACCACAACTTCGATCTTTTGAGGAAGCTGGTCCTGCCTGATGGATCTGTCCTCCGTGCTCAATTACCTGGTAGGCCAACACGTGATTGTCTCTTTGCTGACCCAGCAAGAGATGGAACCAGCTTGCTCAAGATATGGAATGTGAACAAGTGTTCTGGTGTTGTTGGTGTATTCAACTGTCAAGGGGCTGGTTGGTGCAAGGTTGAAAAGAAGACCCGCATCCATGATGCATCTCCTGGTACCCTCACTGGTTCTGTTCGTGCTATTGATGTTGATAGCCTTGCCCAAATTGCTGGTGATGATTGGAATGGAGAAACAGTAGTTTATGCCCATAAGTCAGGAGAGGTGTTTCGTTTACCAAAAGATGTTTCAGTGCCAGTGACACTTAAAGTTCTGGAGTATGAGCTCCTCCATTTCTGTCCTCTCAAGGAGGTTACACCCAACATCTCATTTGCTCCAATAGGCCTGCTTGACATGTTCAACACCAGTGGCGCTGTGGAGCATGTTGTAATCCATCTGGCTTCTGACGACAAAGTTTCTTCGGAGCTTACCACTTCTCTCAGTGAGAATAGATCTTCAACTGCCACAATCACCATCAAAACCAGAGGATGTGGAAGGTTTGGAGCTTACTCTTCTCAGCGTCCCCTGAAGTGTACCGTTGATAGAGTTGAGACGGACTTTGACTATGACCCTGCAACTGGATTACTAACCTTTACCATCCTTATCCCAAAAGAGGATATGTATAAATGGCTAGTAGAAATCCAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

654

Amino Acids

72.63

Weight (kDa)

5.59

Isoelectric Point (pI)

31.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	1 - 296	2.9e-120	Raffinose synthase or seed imbibition protein Sip1
Raffinose_syn	PF05691	296 - 637	8.7e-149	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1062
Acc65I	GGTACC	1 cut(s)	1433
AccB1I	GGYRCC	1 cut(s)	1433
AccBSI	CCGCTC	1 cut(s)	199
AciI	CCGC	3 cut(s)	199, 1130, 1411
AclWI	GGATC	3 cut(s)	1016, 1029, 1246
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	1862
AcvI	CACGTG	1 cut(s)	1277
AdeI	CACNNNGTG	1 cut(s)	634
AfaI	GTAC	4 cut(s)	504, 671, 1435, 1849
AfiI	CCNNNNNNNGG	4 cut(s)	666, 926, 1892, 1927
AflIII	ACRYGT	3 cut(s)	601, 1274, 1668
AgsI	TTSAA	7 cut(s)	299, 473, 832, 1369, 1400, 1675, 1773
AjnI	CCWGG	5 cut(s)	309, 745, 1189, 1261, 1429
AjuI	GAANNNNNNNTTGG	2 cut(s)	1546, 1578
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
Alw21I	GWGCWC	4 cut(s)	404, 517, 1255, 1602
Alw26I	GTCTC	6 cut(s)	68, 89, 592, 742, 1289, 1859
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	3 cut(s)	1016, 1029, 1246
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	5 cut(s)	166, 592, 888, 1268, 1657
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	4 cut(s)	622, 692, 1127, 1145
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	761, 793
Asp700I	GAANNNNTTC	1 cut(s)	827
Asp718I	GGTACC	1 cut(s)	1433
AspLEI	GCGC	1 cut(s)	1688
AspS9I	GGNCC	4 cut(s)	126, 166, 889, 1225
AsuHPI	GGTGA	3 cut(s)	122, 1502, 1777
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	2 cut(s)	126, 1225
BaeGI	GKGCMC	1 cut(s)	404
BaeI	ACNNNNGTAYC	4 cut(s)	480, 513, 661, 694
BamHI	GGATCC	1 cut(s)	1021
BanI	GGYRCC	1 cut(s)	1433
BanII	GRGCYC	1 cut(s)	1602
BbrPI	CACGTG	1 cut(s)	1277
BbsI	GAAGAC	2 cut(s)	139, 1412
Bbv12I	GWGCWC	4 cut(s)	404, 517, 1255, 1602
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	4 cut(s)	634, 679, 1139, 1157
BciT130I	CCWGG	5 cut(s)	311, 747, 1191, 1263, 1431
BciVI	GTATCC	1 cut(s)	481
BcoDI	GTCTC	6 cut(s)	68, 89, 592, 742, 1289, 1859
BfaI	CTAG	1 cut(s)	1946
BfmI	CTRYAG	1 cut(s)	324
BfoI	RGCGCY	1 cut(s)	1689
BfuI	GTATCC	1 cut(s)	481
BglI	GCCNNNNNGGC	1 cut(s)	896
BglII	AGATCT	1 cut(s)	1766
BisI	GCNGC	4 cut(s)	623, 693, 1128, 1146
BlsI	GCNGC	4 cut(s)	624, 694, 1129, 1147
Bme1390I	CCNGG	5 cut(s)	311, 747, 1191, 1263, 1431
Bme18I	GGWCC	2 cut(s)	126, 1225
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	4 cut(s)	126, 166, 889, 1225
BmiI	GGNNCC	4 cut(s)	127, 1023, 1312, 1435
BmrFI	CCNGG	5 cut(s)	311, 747, 1191, 1263, 1431
BmrI	ACTGGG	2 cut(s)	682, 1108
BmsI	GCATC	7 cut(s)	400, 634, 823, 920, 1411, 1422, 1433
BmuI	ACTGGG	2 cut(s)	682, 1108
BpiI	GAAGAC	2 cut(s)	139, 1412
BplI	GAGNNNNNCTC	2 cut(s)	572, 604
BpmI	CTGGAG	3 cut(s)	92, 182, 1610
Bpu10I	CCTNAGC	1 cut(s)	435
BpuEI	CTTGAG	3 cut(s)	914, 1307, 1604
BsaAI	YACGTR	2 cut(s)	274, 1277
BsaI	GGTCTC	2 cut(s)	68, 89
BsaJI	CCNNGG	4 cut(s)	99, 483, 1016, 1075
BsaWI	WCCGGW	1 cut(s)	12
BsaXI	ACNNNNNCTCC	4 cut(s)	155, 185, 1497, 1527
Bsc4I	CCNNNNNNNGG	4 cut(s)	666, 926, 1892, 1927
Bse1I	ACTGG	9 cut(s)	75, 169, 677, 734, 1103, 1447, 1571, 1680, 1897
BseBI	CCWGG	5 cut(s)	311, 747, 1191, 1263, 1431
BseDI	CCNNGG	4 cut(s)	99, 483, 1016, 1075
BseLI	CCNNNNNNNGG	4 cut(s)	666, 926, 1892, 1927
BseMII	CTCAG	4 cut(s)	426, 603, 1768, 1844
BseNI	ACTGG	9 cut(s)	75, 169, 677, 734, 1103, 1447, 1571, 1680, 1897
BseRI	GAGGAG	1 cut(s)	1592
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	4 cut(s)	634, 679, 1139, 1157
BseYI	CCCAGC	1 cut(s)	1297
BsgI	GTGCAG	1 cut(s)	1164
BshFI	GGCC	5 cut(s)	168, 594, 890, 1270, 1659
BshNI	GGYRCC	1 cut(s)	1433
BsiHKAI	GWGCWC	4 cut(s)	404, 517, 1255, 1602
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	1821
BslI	CCNNNNNNNGG	4 cut(s)	666, 926, 1892, 1927
BsmAI	GTCTC	6 cut(s)	68, 89, 592, 742, 1289, 1859
BsmBI	CGTCTC	1 cut(s)	1859
BsmFI	GGGAC	1 cut(s)	1821
BsnI	GGCC	5 cut(s)	168, 594, 890, 1270, 1659
Bso31I	GGTCTC	2 cut(s)	68, 89
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	4 cut(s)	404, 517, 1255, 1602
Bsp143I	GATC	4 cut(s)	1021, 1207, 1238, 1766
BspACI	CCGC	3 cut(s)	199, 1130, 1411
BspANI	GGCC	5 cut(s)	168, 594, 890, 1270, 1659
BspCNI	CTCAG	4 cut(s)	427, 602, 1767, 1843
BspLI	GGNNCC	4 cut(s)	127, 1023, 1312, 1435
BspPI	GGATC	3 cut(s)	1016, 1029, 1246
BspT107I	GGYRCC	1 cut(s)	1433
BspTNI	GGTCTC	2 cut(s)	68, 89
BsrBI	CCGCTC	1 cut(s)	199
BsrI	ACTGG	9 cut(s)	75, 169, 677, 734, 1103, 1447, 1571, 1680, 1897
BssECI	CCNNGG	4 cut(s)	99, 483, 1016, 1075
BssMI	GATC	4 cut(s)	1021, 1207, 1238, 1766
BssT1I	CCWWGG	3 cut(s)	99, 483, 1075
Bst2UI	CCWGG	5 cut(s)	311, 747, 1191, 1263, 1431
Bst4CI	ACNGT	6 cut(s)	145, 519, 800, 1373, 1513, 1852
Bst6I	CTCTTC	1 cut(s)	1831
BstAPI	GCANNNNNTGC	2 cut(s)	521, 939
BstBAI	YACGTR	2 cut(s)	274, 1277
BstC8I	GCNNGC	4 cut(s)	279, 657, 1319, 1661
BstDEI	CTNAG	4 cut(s)	435, 589, 1754, 1830
BstDSI	CCRYGG	1 cut(s)	1016
BstH2I	RGCGCY	1 cut(s)	1689
BstHHI	GCGC	1 cut(s)	1688
BstKTI	GATC	4 cut(s)	1024, 1210, 1241, 1769
BstMAI	GTCTC	6 cut(s)	68, 89, 592, 742, 1289, 1859
BstMBI	GATC	4 cut(s)	1021, 1207, 1238, 1766
BstMWI	GCNNNNNNNGC	9 cut(s)	320, 521, 860, 896, 905, 939, 1228, 1298, 1484
BstNI	CCWGG	5 cut(s)	311, 747, 1191, 1263, 1431
BstNSI	RCATGY	7 cut(s)	281, 340, 605, 659, 946, 1672, 1700
BstSCI	CCNGG	5 cut(s)	309, 745, 1189, 1261, 1429
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	4 cut(s)	634, 679, 1139, 1157
BstV2I	GAAGAC	2 cut(s)	139, 1412
BstX2I	RGATCY	3 cut(s)	1021, 1238, 1766
BstXI	CCANNNNNNTGG	2 cut(s)	569, 1487
BstYI	RGATCY	3 cut(s)	1021, 1238, 1766
BsuI	GTATCC	1 cut(s)	481
BsuRI	GGCC	5 cut(s)	168, 594, 890, 1270, 1659
BtgI	CCRYGG	1 cut(s)	1016
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	9 cut(s)	68, 717, 954, 1186, 1440, 1572, 1578, 1687, 1762
Cac8I	GCNNGC	4 cut(s)	279, 657, 1319, 1661
CfoI	GCGC	1 cut(s)	1688
Cfr13I	GGNCC	4 cut(s)	126, 166, 889, 1225
CseI	GACGC	2 cut(s)	43, 1823
CsiI	ACCWGGT	1 cut(s)	1261
Csp6I	GTAC	4 cut(s)	503, 670, 1434, 1848
CspCI	CAANNNNNGTGG	2 cut(s)	1663, 1698
CviQI	GTAC	4 cut(s)	503, 670, 1434, 1848
DdeI	CTNAG	4 cut(s)	435, 589, 1754, 1830
DpnI	GATC	4 cut(s)	1023, 1209, 1240, 1768
DpnII	GATC	4 cut(s)	1021, 1207, 1238, 1766
DraIII	CACNNNGTG	1 cut(s)	634
Eam1104I	CTCTTC	1 cut(s)	1831
EarI	CTCTTC	1 cut(s)	1831
Ecl136II	GAGCTC	1 cut(s)	1600
Eco130I	CCWWGG	3 cut(s)	99, 483, 1075
Eco147I	AGGCCT	2 cut(s)	594, 1659
Eco24I	GRGCYC	1 cut(s)	1602
Eco31I	GGTCTC	2 cut(s)	68, 89
Eco47I	GGWCC	2 cut(s)	126, 1225
Eco53kI	GAGCTC	1 cut(s)	1600
Eco57I	CTGAAG	1 cut(s)	1862
Eco72I	CACGTG	1 cut(s)	1277
Eco88I	CYCGRG	1 cut(s)	221
EcoICRI	GAGCTC	1 cut(s)	1600
EcoO109I	RGGNCCY	2 cut(s)	126, 889
EcoRII	CCWGG	5 cut(s)	309, 745, 1189, 1261, 1429
EcoT14I	CCWWGG	3 cut(s)	99, 483, 1075
EcoT22I	ATGCAT	2 cut(s)	935, 1426
EcoT38I	GRGCYC	1 cut(s)	1602
ErhI	CCWWGG	3 cut(s)	99, 483, 1075
Esp3I	CGTCTC	1 cut(s)	1859
FaqI	GGGAC	1 cut(s)	1821
FauI	CCCGC	1 cut(s)	1418
Fnu4HI	GCNGC	4 cut(s)	623, 693, 1128, 1146
FriOI	GRGCYC	1 cut(s)	1602
Fsp4HI	GCNGC	4 cut(s)	623, 693, 1128, 1146
FspBI	CTAG	1 cut(s)	1946
GlaI	GCGC	1 cut(s)	1687
GluI	GCNGC	4 cut(s)	623, 693, 1128, 1146
GsaI	CCCAGC	1 cut(s)	1301
GsuI	CTGGAG	3 cut(s)	92, 182, 1610
HaeII	RGCGCY	1 cut(s)	1689
HaeIII	GGCC	5 cut(s)	168, 594, 890, 1270, 1659
HapII	CCGG	1 cut(s)	13
HgaI	GACGC	2 cut(s)	43, 1823
HhaI	GCGC	1 cut(s)	1688
Hin6I	GCGC	1 cut(s)	1686
HinP1I	GCGC	1 cut(s)	1686
HinfI	GANTC	3 cut(s)	181, 233, 1039
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	122, 1502, 1777
Hpy166II	GTNNAC	8 cut(s)	271, 402, 479, 796, 1118, 1339, 1550, 1848
Hpy188I	TCNGA	6 cut(s)	238, 246, 912, 1003, 1720, 1738
Hpy188III	TCNNGA	6 cut(s)	223, 356, 920, 1324, 1533, 1589
Hpy8I	GTNNAC	8 cut(s)	271, 402, 479, 796, 1118, 1339, 1550, 1848
HpyAV	CCTTC	5 cut(s)	107, 161, 384, 503, 1803
HpyCH4III	ACNGT	6 cut(s)	145, 519, 800, 1373, 1513, 1852
HpyCH4IV	ACGT	2 cut(s)	273, 1276
HpyF10VI	GCNNNNNNNGC	9 cut(s)	320, 521, 860, 896, 905, 939, 1228, 1298, 1484
HpyF3I	CTNAG	4 cut(s)	435, 589, 1754, 1830
HpySE526I	ACGT	2 cut(s)	273, 1276
HspAI	GCGC	1 cut(s)	1686
KpnI	GGTACC	1 cut(s)	1437
Kzo9I	GATC	4 cut(s)	1021, 1207, 1238, 1766
LmnI	GCTCC	7 cut(s)	512, 706, 1605, 1654, 1693, 1738, 1817
Lsp1109I	GCAGC	4 cut(s)	634, 679, 1139, 1157
LweI	GCATC	7 cut(s)	400, 634, 823, 920, 1411, 1422, 1433
MabI	ACCWGGT	1 cut(s)	1261
MaeI	CTAG	1 cut(s)	1946
MaeII	ACGT	2 cut(s)	273, 1276
MaeIII	GTNAC	3 cut(s)	427, 1573, 1627
MalI	GATC	4 cut(s)	1023, 1209, 1240, 1768
MbiI	CCGCTC	1 cut(s)	199
MboI	GATC	4 cut(s)	1021, 1207, 1238, 1766
MboII	GAAGA	7 cut(s)	139, 373, 1041, 1417, 1725, 1761, 1818
MflI	RGATCY	3 cut(s)	1021, 1238, 1766
MhlI	GDGCHC	4 cut(s)	404, 517, 1255, 1602
MluCI	AATT	7 cut(s)	80, 468, 557, 663, 832, 1256, 1482
Mph1103I	ATGCAT	2 cut(s)	935, 1426
MroXI	GAANNNNTTC	1 cut(s)	827
MseI	TTAA	5 cut(s)	18, 662, 885, 1581, 1963
MslI	CAYNNNNRTG	2 cut(s)	89, 630
MspA1I	CMGCKG	3 cut(s)	434, 692, 1130
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	5 cut(s)	311, 747, 1191, 1263, 1431
MvaI	CCWGG	5 cut(s)	311, 747, 1191, 1263, 1431
MwoI	GCNNNNNNNGC	9 cut(s)	320, 521, 860, 896, 905, 939, 1228, 1298, 1484
NdeII	GATC	4 cut(s)	1021, 1207, 1238, 1766
NlaIV	GGNNCC	4 cut(s)	127, 1023, 1312, 1435
NmuCI	GTSAC	2 cut(s)	427, 1573
NsiI	ATGCAT	2 cut(s)	935, 1426
NspI	RCATGY	7 cut(s)	281, 340, 605, 659, 946, 1672, 1700
PaeI	GCATGC	2 cut(s)	281, 659
PaeR7I	CTCGAG	1 cut(s)	221
PceI	AGGCCT	2 cut(s)	594, 1659
PciI	ACATGT	2 cut(s)	601, 1668
PdmI	GAANNNNTTC	1 cut(s)	827
PfeI	GAWTC	3 cut(s)	181, 233, 1039
PkrI	GCNGC	4 cut(s)	624, 694, 1129, 1147
PmaCI	CACGTG	1 cut(s)	1277
PmlI	CACGTG	1 cut(s)	1277
Ppu21I	YACGTR	2 cut(s)	274, 1277
PpuMI	RGGWCCY	1 cut(s)	126
PscI	ACATGT	2 cut(s)	601, 1668
PsiI	TTATAA	1 cut(s)	1062
Psp124BI	GAGCTC	1 cut(s)	1602
Psp5II	RGGWCCY	1 cut(s)	126
Psp6I	CCWGG	5 cut(s)	309, 745, 1189, 1261, 1429
PspCI	CACGTG	1 cut(s)	1277
PspFI	CCCAGC	1 cut(s)	1297
PspGI	CCWGG	5 cut(s)	309, 745, 1189, 1261, 1429
PspN4I	GGNNCC	4 cut(s)	127, 1023, 1312, 1435
PspPI	GGNCC	4 cut(s)	126, 166, 889, 1225
PspPPI	RGGWCCY	1 cut(s)	126
PsuI	RGATCY	3 cut(s)	1021, 1238, 1766
PvuII	CAGCTG	2 cut(s)	434, 692
RsaI	GTAC	4 cut(s)	504, 671, 1435, 1849
RsaNI	GTAC	4 cut(s)	503, 670, 1434, 1848
RseI	CAYNNNNRTG	2 cut(s)	89, 630
SacI	GAGCTC	1 cut(s)	1602
SaqAI	TTAA	5 cut(s)	18, 662, 885, 1581, 1963
SatI	GCNGC	4 cut(s)	623, 693, 1128, 1146
Sau3AI	GATC	4 cut(s)	1021, 1207, 1238, 1766
Sau96I	GGNCC	4 cut(s)	126, 166, 889, 1225
ScrFI	CCNGG	5 cut(s)	311, 747, 1191, 1263, 1431
SduI	GDGCHC	4 cut(s)	404, 517, 1255, 1602
SexAI	ACCWGGT	1 cut(s)	1261
SfaNI	GCATC	7 cut(s)	400, 634, 823, 920, 1411, 1422, 1433
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	221
SinI	GGWCC	2 cut(s)	126, 1225
SlaI	CTCGAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	89, 630
SmlI	CTYRAG	4 cut(s)	221, 893, 1322, 1619
SmoI	CTYRAG	4 cut(s)	221, 893, 1322, 1619
SphI	GCATGC	2 cut(s)	281, 659
Sse9I	AATT	7 cut(s)	80, 468, 557, 663, 832, 1256, 1482
SseBI	AGGCCT	2 cut(s)	594, 1659
SsiI	CCGC	3 cut(s)	199, 1130, 1411
SspMI	CTAG	1 cut(s)	1946
SstI	GAGCTC	1 cut(s)	1602
StuI	AGGCCT	2 cut(s)	594, 1659
StyD4I	CCNGG	5 cut(s)	309, 745, 1189, 1261, 1429
StyI	CCWWGG	3 cut(s)	99, 483, 1075
TaaI	ACNGT	6 cut(s)	145, 519, 800, 1373, 1513, 1852
TaiI	ACGT	2 cut(s)	276, 1279
TaqI	TCGA	3 cut(s)	179, 222, 1206
TasI	AATT	7 cut(s)	80, 468, 557, 663, 832, 1256, 1482
TatI	WGTACW	1 cut(s)	502
TfiI	GAWTC	3 cut(s)	181, 233, 1039
Tru1I	TTAA	5 cut(s)	18, 662, 885, 1581, 1963
Tru9I	TTAA	5 cut(s)	18, 662, 885, 1581, 1963
TscAI	CASTG	9 cut(s)	75, 724, 961, 1186, 1447, 1572, 1578, 1687, 1762
TseFI	GTSAC	2 cut(s)	427, 1573
TseI	GCWGC	4 cut(s)	622, 692, 1127, 1145
Tsp45I	GTSAC	2 cut(s)	427, 1573
TspDTI	ATGAA	8 cut(s)	73, 219, 567, 627, 839, 894, 1031, 1100
TspGWI	ACGGA	3 cut(s)	942, 1238, 1883
TspRI	CASTG	9 cut(s)	75, 724, 961, 1186, 1447, 1572, 1578, 1687, 1762
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	126, 1225
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	7 cut(s)	281, 340, 605, 659, 946, 1672, 1700
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1687
XhoI	CTCGAG	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	827
XspI	CTAG	1 cut(s)	1946
Zsp2I	ATGCAT	2 cut(s)	935, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.