Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314355.1

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Reverse (-)

109 .. 864

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314355.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggttgatagtgacaaaccaagtggtctcaaggattttgtttctgagatcaagaattcctttggccttaggtatgtgtatgtatggcatgcccttttgggatattggggagggcttgttccaaatgctccaggaactaaaaagtataaccctaagttcagacaaccagtacagtcccctggaaatttgtcaaatatgagggatggagcaatggatagtatggagaaatatggtgttggtgtaatagatcctgcaaaggcatatcaattttatgatgatctacacggatatcttgtttcacaggatgtagatggtgttaaggttgatgttcagaacatactggagacagtttcagcaggtttaggagggcgagtctctctaactagacgattccaacaggcacttgagaagtccatagccactcatttccaagataacagcataatctgctgcatgggccaaagcacagactccatttaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

161

Amino Acids

17.85

Weight (kDa)

6.27

Isoelectric Point (pI)

40.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	242
AcsI	RAATTY	2 cut(s)	55, 184
AfaI	GTAC	1 cut(s)	171
AjnI	CCWGG	2 cut(s)	130, 178
AloI	GAACNNNNNNTCC	2 cut(s)	102, 134
Alw26I	GTCTC	3 cut(s)	32, 338, 379
AlwI	GGATC	1 cut(s)	242
AoxI	GGCC	2 cut(s)	64, 457
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	2 cut(s)	55, 184
AspS9I	GGNCC	1 cut(s)	457
AxyI	CCTNAGG	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	2 cut(s)	197, 305
BciT130I	CCWGG	2 cut(s)	132, 180
BcoDI	GTCTC	3 cut(s)	32, 338, 379
BfaI	CTAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	1 cut(s)	451
BlsI	GCNGC	1 cut(s)	452
Bme1390I	CCNGG	2 cut(s)	132, 180
BmgT120I	GGNCC	1 cut(s)	457
BmrFI	CCNGG	2 cut(s)	132, 180
BpmI	CTGGAG	2 cut(s)	114, 362
BpuEI	CTTGAG	2 cut(s)	14, 425
BsaI	GGTCTC	1 cut(s)	32
BsaJI	CCNNGG	1 cut(s)	178
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 357, 387
Bse1I	ACTGG	3 cut(s)	167, 345, 481
Bse21I	CCTNAGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	216
BseBI	CCWGG	2 cut(s)	132, 180
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	208, 310
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	167, 345, 481
BseXI	GCAGC	1 cut(s)	437
BshFI	GGCC	2 cut(s)	66, 459
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	3 cut(s)	32, 338, 379
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	2 cut(s)	66, 459
Bso31I	GGTCTC	1 cut(s)	32
Bsp143I	GATC	3 cut(s)	48, 247, 277
BspANI	GGCC	2 cut(s)	66, 459
BspCNI	CTCAG	1 cut(s)	37
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	3 cut(s)	167, 345, 481
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	48, 247, 277
Bst2UI	CCWGG	2 cut(s)	132, 180
Bst4CI	ACNGT	2 cut(s)	174, 349
BstAPI	GCANNNNNTGC	1 cut(s)	447
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	3 cut(s)	45, 68, 153
BstF5I	GGATG	2 cut(s)	208, 310
BstKTI	GATC	3 cut(s)	51, 250, 280
BstMAI	GTCTC	3 cut(s)	32, 338, 379
BstMBI	GATC	3 cut(s)	48, 247, 277
BstMWI	GCNNNNNNNGC	2 cut(s)	447, 456
BstNI	CCWGG	2 cut(s)	132, 180
BstNSI	RCATGY	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	130, 178
BstV1I	GCAGC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	66, 459
BtsCI	GGATG	2 cut(s)	208, 310
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	170
CspCI	CAANNNNNGTGG	2 cut(s)	4, 39
CviAII	CATG	2 cut(s)	89, 454
CviJI	RGCY	4 cut(s)	66, 115, 419, 459
CviKI_1	RGCY	4 cut(s)	66, 115, 419, 459
CviQI	GTAC	1 cut(s)	170
DdeI	CTNAG	3 cut(s)	45, 68, 153
DpnI	GATC	3 cut(s)	50, 249, 279
DpnII	GATC	3 cut(s)	48, 247, 277
Eco31I	GGTCTC	1 cut(s)	32
Eco32I	GATATC	1 cut(s)	290
Eco81I	CCTNAGG	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	130, 178
EcoRV	GATATC	1 cut(s)	290
FaeI	CATG	2 cut(s)	92, 457
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	2 cut(s)	88, 453
Fnu4HI	GCNGC	1 cut(s)	451
FokI	GGATG	2 cut(s)	215, 317
Fsp4HI	GCNGC	1 cut(s)	451
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	451
GsuI	CTGGAG	2 cut(s)	114, 362
HaeIII	GGCC	2 cut(s)	66, 459
Hin1II	CATG	2 cut(s)	92, 457
HinfI	GANTC	3 cut(s)	372, 390, 470
Hpy188I	TCNGA	3 cut(s)	46, 161, 333
Hpy188III	TCNNGA	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	174, 349
HpyCH4V	TGCA	2 cut(s)	254, 453
HpyF10VI	GCNNNNNNNGC	2 cut(s)	447, 456
HpyF3I	CTNAG	3 cut(s)	45, 68, 153
Hsp92II	CATG	2 cut(s)	92, 457
Kzo9I	GATC	3 cut(s)	48, 247, 277
LmnI	GCTCC	2 cut(s)	133, 206
Lsp1109I	GCAGC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	50, 249, 279
MboI	GATC	3 cut(s)	48, 247, 277
MflI	RGATCY	1 cut(s)	247
MluCI	AATT	3 cut(s)	55, 184, 266
MlyI	GAGTC	2 cut(s)	381, 464
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	3 cut(s)	104, 192, 359
MseI	TTAA	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	132, 180
MvaI	CCWGG	2 cut(s)	132, 180
MwoI	GCNNNNNNNGC	2 cut(s)	447, 456
NdeII	GATC	3 cut(s)	48, 247, 277
NlaIII	CATG	2 cut(s)	92, 457
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	92
PaeI	GCATGC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	390
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	1 cut(s)	452
PleI	GAGTC	2 cut(s)	380, 464
PpsI	GAGTC	2 cut(s)	380, 464
Psp6I	CCWGG	2 cut(s)	130, 178
PspGI	CCWGG	2 cut(s)	130, 178
PspPI	GGNCC	1 cut(s)	457
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	451
Sau3AI	GATC	3 cut(s)	48, 247, 277
Sau96I	GGNCC	1 cut(s)	457
SchI	GAGTC	2 cut(s)	381, 464
ScrFI	CCNGG	2 cut(s)	132, 180
SetI	ASST	3 cut(s)	74, 324, 361
SmlI	CTYRAG	2 cut(s)	29, 404
SmoI	CTYRAG	2 cut(s)	29, 404
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	3 cut(s)	55, 184, 266
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	2 cut(s)	130, 178
TaaI	ACNGT	2 cut(s)	174, 349
TasI	AATT	3 cut(s)	55, 184, 266
TatI	WGTACW	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	450
Tsp45I	GTSAC	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	300
XapI	RAATTY	2 cut(s)	55, 184
XceI	RCATGY	1 cut(s)	92
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.