Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

5728670 .. 5728963

Gene Structure 294 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g05890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTTCAATTCAAGTGCTGCTGTGGAGCAGGTTGAAATCCAATTGGCTTCTGACAAGAAACCTGAGCTTTCTAATGGAGAAGTTAGCGAGAACCGATCCCCAACTGCAACAATTGGTCTCAAAACCAGAGGATGTGGAAGGTTTGGAGCATACTGTTCCCAGCGGCCGCTGAAGTGCACTGTTGACAACGCCGAGACCAACTTCGAGTATGACTCTGCATCTGGATTAACGACGATTACCATCCCGGTACCAGAAAAAGAGATGTACAGATGGTCAGTAGAGATCCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

98

Amino Acids

10.68

Weight (kDa)

4.9

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	1 - 80	2.6e-13	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
Acc65I	GGTACC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	247
AciI	CCGC	2 cut(s)	163, 167
AclWI	GGATC	2 cut(s)	90, 277
AcoI	YGGCCR	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	191
AfaI	GTAC	2 cut(s)	249, 266
AgsI	TTSAA	3 cut(s)	7, 12, 35
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	122, 188
Alw44I	GTGCAC	1 cut(s)	175
AlwI	GGATC	2 cut(s)	90, 277
AoxI	GGCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	175
ApeKI	GCWGC	1 cut(s)	17
Asp718I	GGTACC	1 cut(s)	247
AsuC2I	CCSGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	247
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	2 cut(s)	248, 264
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	122, 188
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	3 cut(s)	18, 164, 167
BlsI	GCNGC	3 cut(s)	19, 165, 168
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu10I	CCTNAGC	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	122, 188
Bse8I	GATNNNNATC	1 cut(s)	239
BseGI	GGATG	2 cut(s)	137, 240
BseJI	GATNNNNATC	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	54
BseSI	GKGCMC	1 cut(s)	179
BseX3I	CGGCCG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	159
Bsh1285I	CGRYCG	1 cut(s)	167
BshFI	GGCC	1 cut(s)	166
BshNI	GGYRCC	1 cut(s)	247
BsiEI	CGRYCG	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	245
BsmAI	GTCTC	2 cut(s)	122, 188
BsnI	GGCC	1 cut(s)	166
Bso31I	GGTCTC	2 cut(s)	122, 188
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	95, 282
BspACI	CCGC	2 cut(s)	163, 167
BspANI	GGCC	1 cut(s)	166
BspCNI	CTCAG	1 cut(s)	55
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	90, 277
BspT107I	GGYRCC	1 cut(s)	247
BspTNI	GGTCTC	2 cut(s)	122, 188
BsrGI	TGTACA	1 cut(s)	264
BssMI	GATC	2 cut(s)	95, 282
Bst4CI	ACNGT	2 cut(s)	155, 181
BstAUI	TGTACA	1 cut(s)	264
BstDEI	CTNAG	1 cut(s)	63
BstF5I	GGATG	2 cut(s)	137, 240
BstKTI	GATC	2 cut(s)	98, 285
BstMAI	GTCTC	2 cut(s)	122, 188
BstMBI	GATC	2 cut(s)	95, 282
BstMCI	CGRYCG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	243
BstSLI	GKGCMC	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	4
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	164
BsuRI	GGCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	137, 240
BtsIMutI	CAGTG	1 cut(s)	177
BveI	ACCTGC	1 cut(s)	19
CciNI	GCGGCCGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	248, 265
CviJI	RGCY	3 cut(s)	47, 67, 166
CviKI_1	RGCY	3 cut(s)	47, 67, 166
CviQI	GTAC	2 cut(s)	248, 265
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	2 cut(s)	97, 284
DpnII	GATC	2 cut(s)	95, 282
EaeI	YGGCCR	1 cut(s)	164
EagI	CGGCCG	1 cut(s)	164
EclXI	CGGCCG	1 cut(s)	164
Eco31I	GGTCTC	2 cut(s)	122, 188
Eco52I	CGGCCG	1 cut(s)	164
Eco57I	CTGAAG	1 cut(s)	191
FaiI	YATR	2 cut(s)	151, 210
Fnu4HI	GCNGC	3 cut(s)	18, 164, 167
FokI	GGATG	2 cut(s)	144, 227
Fsp4HI	GCNGC	3 cut(s)	18, 164, 167
GluI	GCNGC	3 cut(s)	18, 164, 167
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	166
HapII	CCGG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	177, 184
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	177, 184
Hpy99I	CGWCG	1 cut(s)	235
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	2 cut(s)	155, 181
HpyCH4V	TGCA	3 cut(s)	107, 177, 218
HpyF3I	CTNAG	1 cut(s)	63
KpnI	GGTACC	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	95, 282
LmnI	GCTCC	2 cut(s)	25, 146
LpnPI	CCDG	7 cut(s)	14, 75, 139, 173, 207, 258, 264
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	227
MalI	GATC	2 cut(s)	97, 284
MboI	GATC	2 cut(s)	95, 282
MfeI	CAATTG	2 cut(s)	41, 111
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	1 cut(s)	179
MluCI	AATT	3 cut(s)	7, 41, 111
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	1 cut(s)	122
MseI	TTAA	1 cut(s)	227
MspA1I	CMGCKG	2 cut(s)	163, 169
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	2 cut(s)	41, 111
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	95, 282
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	217
NotI	GCGGCCGC	1 cut(s)	164
PkrI	GCNGC	3 cut(s)	19, 165, 168
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	282
RsaI	GTAC	2 cut(s)	249, 266
RsaNI	GTAC	2 cut(s)	248, 265
SaqAI	TTAA	1 cut(s)	227
SatI	GCNGC	3 cut(s)	18, 164, 167
Sau3AI	GATC	2 cut(s)	95, 282
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	245
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	4 cut(s)	33, 64, 69, 143
SfaNI	GCATC	1 cut(s)	227
Sse9I	AATT	3 cut(s)	7, 41, 111
SsiI	CCGC	2 cut(s)	163, 167
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	155, 181
TaqI	TCGA	1 cut(s)	204
TasI	AATT	3 cut(s)	7, 41, 111
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	166, 169
Tru1I	TTAA	1 cut(s)	227
Tru9I	TTAA	1 cut(s)	227
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	1 cut(s)	17
TspRI	CASTG	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.