Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

7725236 .. 7729508

Gene Structure 4273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1070300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2028 bp

ATGAAGGAGATCAACATTCTGAAAATGGGGGGTGGAGCTGTCATTAATGCGATCACAGTCGGGCTGGAGAAACCACATGTAATGAATACCAATCAAACGGATCAAATTAATTGGACTTTAAAGCATTTGTGGAAAGGAAAAAAAGAAAAAAACCAGAAATCGAGAGATTCTGCTGTTCAGACCAATCAAGGCCAGTGCCTCGTTTACATGCACGCTGGAACCAATCCATTTGAAGTCATCACCCAAGCTGTAAAGGCTGTGGAAAAACACATGAAAACTTTTGTTCATCGCGAGAAGAAAAAGTTGCCTTCTTTTCTGGACTGGTTTGGCTGGTGTACATGGGATGCCTTTTACACCGATGTCACAGCTGAGGGTGTGGTTCAAGGCCTTAAAAGCTTATCGGAGGGAGGGACTCCTCCGCGGTTCCTAATCGTTGATGACGGTTGGCAGCAGATAGAAAATAAAGACAAGGATTCTGGTGTCGTTGTACAAGAAGGAGCACAGTTTGCAAGTAGGTTGACAGGAATCAAAGAGAACGAAAAGTTCCAAAAGAACGACCACAACAATGAGCAAGTCTCTGGCCTGAAACATGTTGTGGATGAAGCAAAGCAGCATCACAATGTGAAATTTGTGTATGTATGGCATGCTCTAGCTGGGTACTGGGGTGGAGTAAAACCAGCTGCTACTGGCATGGAACACTATGACACTGCTTTGGCATACCCAGTGTCGTCCCCTGGTGTAGAGGGCAACCAACCAGACATAGTTATGGACAGCTTAACTGTTCATGGTCTTGGTCTGGTACATCCAAAGAAAGTTTTCAATTTCTACAATGAGCTTCATTCCTACTTGGCTTCCTGTGGAGTCGATGGAGTTAAGGTTGATGTTCAGAATATCATCGAGACTCTAGGGTCTGGTCATGGTGGAAGAGTTTCTCTGACCCGCAGCTACCACCAGGCACTTGAGGCTTCAGTTGCTCGAAATTTTGCTGACAACGGATGCATTTCTTGCATGTGTCACAACACTGATGGGCTCTACAGTGCCAAGCAGACTGCTGTGGTCAGAGCCTCTGATGACTTCTATCCCCGAGATCCTGCTTCACACACAATTCATATATCTTCCGTTGCTTATAACACCCTGTTCCTTGGAGAATTCATGCAACCTGACTGGGATATGTTTCACAGTTTACACCCAGCGGCAGAGTATCACGGTGCAGCTCGTGCTCTTGGTGGATGTGCAATCTATGTCAGTGATAAGCCAGGCCATCACAATTTTGACCTTCTGAGGAAGCTGGTTCTCCCTGATGGATCTGTCCTCCGTGCCAAGTTACCTGGCAGGCCTACCCGTGATTGTCTCTTCGCTGATCCAGCAAGAGACAGGACCAGCTTGCTCAAAATATGGAATGTCAACAATCTCTCTGGTGTGGTTGGTGTGTTTAACTGTCAAGGTGCCGGTTGGTGCAAGATTGAAAAGAAGACGCGCATTCATGATTACTCTCCTGGTACCCTCAGTGGTTCTGTTCGTGCCGCTGATGTTGATGCCATTGCTCAAGTTGCTGGTGCTGATTGGAATGGAGAAACAGCAGTATATGCTCATAAGTCAGGTGAGGTTCTTCGGTTGCCAAAAGGTGCTTCAGTGCCTGTGACGCTTAAAGTTCTTGACTATGAGGTTTTCCATTTCTGTCCTCTCAAGGAAATTACATCCGACGTCTCATTTGCACCAATAGGCCTACTTGACATGTTCAATTCAAGTGCTGCTGTGGAGGAGGTTGAAATCCATTTGGCTTCTGACAAGAAACCAGAGCTTTCTAATGGAGAAGTTAGCGAGAACCGATCTCCAACTGCGACAATTGGTCTCAAAACCAGAGGATGTGGAAGGTTTGGAGCTTACTGTTCCCGGCGGCCGCTGAAGTGCACTGTTGACAACGCTGAGACCAACTTCGAATATGACTCTGCATCTGGATTGACGACGATTACCATTCCAGTACCAGAAAAAGAGATGTACAGATGGTCAGTAGAGATCCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

676

Amino Acids

74.32

Weight (kDa)

6.55

Isoelectric Point (pI)

32.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Raffinose_syn	PF05691	53 - 658	5.5e-281	Raffinose synthase or seed imbibition protein Sip1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1128
AasI	GACNNNNNNGTC	1 cut(s)	907
AatII	GACGTC	1 cut(s)	1707
Acc65I	GGTACC	1 cut(s)	1499
AccB1I	GGYRCC	2 cut(s)	1445, 1499
AccII	CGCG	3 cut(s)	291, 421, 1477
AciI	CCGC	7 cut(s)	419, 421, 940, 1193, 1524, 1897, 1901
AclWI	GGATC	5 cut(s)	108, 1082, 1312, 1355, 2011
AcoI	YGGCCR	1 cut(s)	1898
AcsI	RAATTY	3 cut(s)	626, 979, 1148
AcuI	CTGAAG	3 cut(s)	951, 1614, 1925
AcyI	GRCGYC	1 cut(s)	1704
AdeI	CACNNNGTG	1 cut(s)	622
AfaI	GTAC	7 cut(s)	337, 489, 659, 801, 1501, 1983, 2000
AflIII	ACRYGT	3 cut(s)	76, 589, 1734
AgsI	TTSAA	7 cut(s)	233, 383, 820, 1466, 1741, 1746, 1769
AhdI	GACNNNNNGTC	1 cut(s)	1848
AjnI	CCWGG	5 cut(s)	733, 951, 1255, 1327, 1495
AjuI	GAANNNNNNNTTGG	2 cut(s)	1612, 1644
Alw21I	GWGCWC	3 cut(s)	502, 1222, 1913
Alw26I	GTCTC	7 cut(s)	580, 893, 1355, 1365, 1711, 1856, 1922
Alw44I	GTGCAC	1 cut(s)	1909
AlwI	GGATC	5 cut(s)	108, 1082, 1312, 1355, 2011
AlwNI	CAGNNNCTG	1 cut(s)	1637
Ama87I	CYCGRG	1 cut(s)	1083
AoxI	GGCC	7 cut(s)	190, 385, 580, 1258, 1334, 1723, 1898
ApaLI	GTGCAC	1 cut(s)	1909
ApeKI	GCWGC	6 cut(s)	448, 610, 680, 942, 1211, 1751
ApoI	RAATTY	3 cut(s)	626, 979, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	1694, 1726
AseI	ATTAAT	2 cut(s)	45, 108
Asp700I	GAANNNNTTC	2 cut(s)	815, 928
Asp718I	GGTACC	1 cut(s)	1499
AspLEI	GCGC	1 cut(s)	1479
AspS9I	GGNCC	1 cut(s)	1377
AsuC2I	CCSGG	1 cut(s)	1894
AsuHPI	GGTGA	2 cut(s)	232, 1613
AsuII	TTCGAA	1 cut(s)	1938
AvaI	CYCGRG	1 cut(s)	1083
AvaII	GGWCC	1 cut(s)	1377
BaeGI	GKGCMC	1 cut(s)	1913
BaeI	ACNNNNGTAYC	2 cut(s)	649, 682
BanI	GGYRCC	2 cut(s)	1445, 1499
BanII	GRGCYC	1 cut(s)	1032
BauI	CACGAG	1 cut(s)	1215
BbsI	GAAGAC	1 cut(s)	1478
Bbv12I	GWGCWC	3 cut(s)	502, 1222, 1913
BbvCI	CCTCAGC	1 cut(s)	369
BbvI	GCAGC	6 cut(s)	460, 622, 667, 954, 1223, 1738
BccI	CCATC	5 cut(s)	860, 1019, 1269, 1295, 1998
BciT130I	CCWGG	5 cut(s)	735, 953, 1257, 1329, 1497
BcnI	CCSGG	1 cut(s)	1894
BcoDI	GTCTC	7 cut(s)	580, 893, 1355, 1365, 1711, 1856, 1922
BfaI	CTAG	2 cut(s)	650, 905
BfmI	CTRYAG	1 cut(s)	1033
Bme1390I	CCNGG	6 cut(s)	735, 953, 1257, 1329, 1497, 1894
Bme18I	GGWCC	1 cut(s)	1377
BmeRI	GACNNNNNGTC	1 cut(s)	1848
BmeT110I	CYCGRG	1 cut(s)	1083
BmgT120I	GGNCC	1 cut(s)	1377
BmiI	GGNNCC	4 cut(s)	220, 425, 1447, 1501
BmrFI	CCNGG	6 cut(s)	735, 953, 1257, 1329, 1497, 1894
BmrI	ACTGGG	3 cut(s)	670, 716, 1174
BmsI	GCATC	5 cut(s)	334, 622, 986, 1525, 1961
BmuI	ACTGGG	3 cut(s)	670, 716, 1174
BpiI	GAAGAC	1 cut(s)	1478
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
BpmI	CTGGAG	1 cut(s)	86
Bpu10I	CCTNAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	1938
BpuEI	CTTGAG	3 cut(s)	980, 1530, 1670
BpuMI	CCSGG	1 cut(s)	1894
BsaHI	GRCGYC	1 cut(s)	1704
BsaI	GGTCTC	2 cut(s)	1856, 1922
BsaJI	CCNNGG	3 cut(s)	419, 733, 1141
BsaXI	ACNNNNNCTCC	2 cut(s)	861, 891
Bse118I	RCCGGY	1 cut(s)	1448
Bse1I	ACTGG	7 cut(s)	193, 326, 665, 691, 722, 1169, 1979
Bse3DI	GCAATG	1 cut(s)	1539
BseBI	CCWGG	5 cut(s)	735, 953, 1257, 1329, 1497
BseDI	CCNNGG	3 cut(s)	419, 733, 1141
BseGI	GGATG	7 cut(s)	349, 604, 802, 1001, 1235, 1697, 1871
BseMI	GCAATG	1 cut(s)	1539
BseMII	CTCAG	4 cut(s)	360, 1271, 1519, 1917
BseNI	ACTGG	7 cut(s)	193, 326, 665, 691, 722, 1169, 1979
BseRI	GAGGAG	2 cut(s)	405, 1775
BseSI	GKGCMC	1 cut(s)	1913
BseX3I	CGGCCG	1 cut(s)	1898
BseXI	GCAGC	6 cut(s)	460, 622, 667, 954, 1223, 1738
BseYI	CCCAGC	2 cut(s)	653, 1189
BsgI	GTGCAG	1 cut(s)	1230
Bsh1236I	CGCG	3 cut(s)	291, 421, 1477
Bsh1285I	CGRYCG	1 cut(s)	1901
BshFI	GGCC	7 cut(s)	192, 387, 582, 1260, 1336, 1725, 1900
BshNI	GGYRCC	2 cut(s)	1445, 1499
BsiEI	CGRYCG	1 cut(s)	1901
BsiHKAI	GWGCWC	3 cut(s)	502, 1222, 1913
BsiHKCI	CYCGRG	1 cut(s)	1083
BsiSI	CCGG	2 cut(s)	1449, 1894
BslFI	GGGAC	2 cut(s)	424, 715
BsmAI	GTCTC	7 cut(s)	580, 893, 1355, 1365, 1711, 1856, 1922
BsmBI	CGTCTC	1 cut(s)	1711
BsmFI	GGGAC	2 cut(s)	424, 715
BsmI	GAATGC	1 cut(s)	1479
BsnI	GGCC	7 cut(s)	192, 387, 582, 1260, 1336, 1725, 1900
Bso31I	GGTCTC	2 cut(s)	1856, 1922
BsoBI	CYCGRG	1 cut(s)	1083
Bsp119I	TTCGAA	1 cut(s)	1938
Bsp1286I	GDGCHC	4 cut(s)	502, 1032, 1222, 1913
Bsp1407I	TGTACA	3 cut(s)	335, 487, 1998
Bsp143I	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
Bsp68I	TCGCGA	1 cut(s)	291
BspACI	CCGC	7 cut(s)	419, 421, 940, 1193, 1524, 1897, 1901
BspANI	GGCC	7 cut(s)	192, 387, 582, 1260, 1336, 1725, 1900
BspCNI	CTCAG	4 cut(s)	361, 1272, 1518, 1918
BspFNI	CGCG	3 cut(s)	291, 421, 1477
BspHI	TCATGA	1 cut(s)	1483
BspLI	GGNNCC	4 cut(s)	220, 425, 1447, 1501
BspPI	GGATC	5 cut(s)	108, 1082, 1312, 1355, 2011
BspT104I	TTCGAA	1 cut(s)	1938
BspT107I	GGYRCC	2 cut(s)	1445, 1499
BspTNI	GGTCTC	2 cut(s)	1856, 1922
BsrDI	GCAATG	1 cut(s)	1539
BsrFI	RCCGGY	1 cut(s)	1448
BsrGI	TGTACA	3 cut(s)	335, 487, 1998
BsrI	ACTGG	7 cut(s)	193, 326, 665, 691, 722, 1169, 1979
BssAI	RCCGGY	1 cut(s)	1448
BssECI	CCNNGG	3 cut(s)	419, 733, 1141
BssMI	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
BssNI	GRCGYC	1 cut(s)	1704
BssSI	CACGAG	1 cut(s)	1215
BssT1I	CCWWGG	1 cut(s)	1141
Bst2BI	CACGAG	1 cut(s)	1215
Bst2UI	CCWGG	5 cut(s)	735, 953, 1257, 1329, 1497
Bst6I	CTCTTC	2 cut(s)	919, 1358
BstACI	GRCGYC	1 cut(s)	1704
BstAPI	GCANNNNNTGC	4 cut(s)	506, 1005, 1217, 1586
BstAUI	TGTACA	3 cut(s)	335, 487, 1998
BstBI	TTCGAA	1 cut(s)	1938
BstC8I	GCNNGC	4 cut(s)	213, 645, 1334, 1385
BstDEI	CTNAG	4 cut(s)	369, 1280, 1505, 1926
BstDSI	CCRYGG	1 cut(s)	419
BstF5I	GGATG	7 cut(s)	349, 604, 802, 1001, 1235, 1697, 1871
BstFNI	CGCG	3 cut(s)	291, 421, 1477
BstHHI	GCGC	1 cut(s)	1479
BstKTI	GATC	8 cut(s)	12, 54, 103, 1090, 1307, 1363, 1832, 2019
BstMAI	GTCTC	7 cut(s)	580, 893, 1355, 1365, 1711, 1856, 1922
BstMBI	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
BstMCI	CGRYCG	1 cut(s)	1901
BstNI	CCWGG	5 cut(s)	735, 953, 1257, 1329, 1497
BstNSI	RCATGY	6 cut(s)	80, 211, 593, 647, 1012, 1738
BstSCI	CCNGG	6 cut(s)	733, 951, 1255, 1327, 1495, 1892
BstSFI	CTRYAG	1 cut(s)	1033
BstSLI	GKGCMC	1 cut(s)	1913
BstUI	CGCG	3 cut(s)	291, 421, 1477
BstV1I	GCAGC	6 cut(s)	460, 622, 667, 954, 1223, 1738
BstV2I	GAAGAC	1 cut(s)	1478
BstX2I	RGATCY	3 cut(s)	1087, 1304, 2016
BstYI	RGATCY	3 cut(s)	1087, 1304, 2016
BstZI	CGGCCG	1 cut(s)	1898
BsuRI	GGCC	7 cut(s)	192, 387, 582, 1260, 1336, 1725, 1900
BtgI	CCRYGG	1 cut(s)	419
BtgZI	GCGATG	1 cut(s)	272
BtsCI	GGATG	7 cut(s)	349, 604, 802, 1001, 1235, 1697, 1871
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	9 cut(s)	200, 705, 729, 1020, 1042, 1252, 1513, 1638, 1911
BtuMI	TCGCGA	1 cut(s)	291
Cac8I	GCNNGC	4 cut(s)	213, 645, 1334, 1385
CaiI	CAGNNNCTG	1 cut(s)	1637
CciI	TCATGA	1 cut(s)	1483
CciNI	GCGGCCGC	1 cut(s)	1898
CfoI	GCGC	1 cut(s)	1479
Cfr10I	RCCGGY	1 cut(s)	1448
Cfr13I	GGNCC	1 cut(s)	1377
Cfr42I	CCGCGG	1 cut(s)	422
CseI	GACGC	2 cut(s)	1483, 1651
Csp6I	GTAC	7 cut(s)	336, 488, 658, 800, 1500, 1982, 1999
CviQI	GTAC	7 cut(s)	336, 488, 658, 800, 1500, 1982, 1999
DdeI	CTNAG	4 cut(s)	369, 1280, 1505, 1926
DpnI	GATC	8 cut(s)	11, 53, 102, 1089, 1306, 1362, 1831, 2018
DpnII	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
DraI	TTTAAA	1 cut(s)	120
DraIII	CACNNNGTG	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	907
DriI	GACNNNNNGTC	1 cut(s)	1848
DseDI	GACNNNNNNGTC	1 cut(s)	907
EaeI	YGGCCR	1 cut(s)	1898
EagI	CGGCCG	1 cut(s)	1898
Eam1104I	CTCTTC	2 cut(s)	919, 1358
Eam1105I	GACNNNNNGTC	1 cut(s)	1848
EarI	CTCTTC	2 cut(s)	919, 1358
EclXI	CGGCCG	1 cut(s)	1898
Eco130I	CCWWGG	1 cut(s)	1141
Eco147I	AGGCCT	3 cut(s)	387, 1336, 1725
Eco24I	GRGCYC	1 cut(s)	1032
Eco31I	GGTCTC	2 cut(s)	1856, 1922
Eco47I	GGWCC	1 cut(s)	1377
Eco52I	CGGCCG	1 cut(s)	1898
Eco57I	CTGAAG	3 cut(s)	951, 1614, 1925
Eco88I	CYCGRG	1 cut(s)	1083
EcoRI	GAATTC	1 cut(s)	1148
EcoRII	CCWGG	5 cut(s)	733, 951, 1255, 1327, 1495
EcoT14I	CCWWGG	1 cut(s)	1141
EcoT22I	ATGCAT	1 cut(s)	1001
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	1141
Esp3I	CGTCTC	1 cut(s)	1711
FaqI	GGGAC	2 cut(s)	424, 715
FauI	CCCGC	1 cut(s)	947
FokI	GGATG	7 cut(s)	356, 611, 789, 1008, 1242, 1684, 1878
FriOI	GRGCYC	1 cut(s)	1032
FspBI	CTAG	2 cut(s)	650, 905
GlaI	GCGC	1 cut(s)	1478
GsaI	CCCAGC	2 cut(s)	657, 1193
GsuI	CTGGAG	1 cut(s)	86
HaeIII	GGCC	7 cut(s)	192, 387, 582, 1260, 1336, 1725, 1900
HapII	CCGG	2 cut(s)	1449, 1894
HgaI	GACGC	2 cut(s)	1483, 1651
HhaI	GCGC	1 cut(s)	1479
Hin1I	GRCGYC	1 cut(s)	1704
Hin6I	GCGC	1 cut(s)	1477
HinP1I	GCGC	1 cut(s)	1477
HincII	GTYRAC	3 cut(s)	519, 1405, 1918
HindII	GTYRAC	3 cut(s)	519, 1405, 1918
HindIII	AAGCTT	1 cut(s)	394
HinfI	GANTC	7 cut(s)	167, 412, 473, 525, 861, 901, 1946
HpaII	CCGG	2 cut(s)	1449, 1894
HphI	GGTGA	2 cut(s)	232, 1613
Hpy166II	GTNNAC	7 cut(s)	205, 336, 519, 1184, 1405, 1911, 1918
Hpy188III	TCNNGA	7 cut(s)	162, 290, 317, 898, 1484, 1655, 1956
Hpy8I	GTNNAC	7 cut(s)	205, 336, 519, 1184, 1405, 1911, 1918
Hpy99I	CGWCG	2 cut(s)	1706, 1969
HpyAV	CCTTC	4 cut(s)	318, 488, 1286, 1866
HpyCH4IV	ACGT	1 cut(s)	1704
HpyF3I	CTNAG	4 cut(s)	369, 1280, 1505, 1926
HpySE526I	ACGT	1 cut(s)	1704
Hsp92I	GRCGYC	1 cut(s)	1704
HspAI	GCGC	1 cut(s)	1477
KpnI	GGTACC	1 cut(s)	1503
KspI	CCGCGG	1 cut(s)	422
Kzo9I	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
LmnI	GCTCC	3 cut(s)	35, 497, 1880
Lsp1109I	GCAGC	6 cut(s)	460, 622, 667, 954, 1223, 1738
LweI	GCATC	5 cut(s)	334, 622, 986, 1525, 1961
MaeI	CTAG	2 cut(s)	650, 905
MaeII	ACGT	1 cut(s)	1704
MaeIII	GTNAC	4 cut(s)	361, 1013, 1323, 1639
MalI	GATC	8 cut(s)	11, 53, 102, 1089, 1306, 1362, 1831, 2018
MboI	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
MboII	GAAGA	6 cut(s)	307, 936, 1107, 1345, 1483, 1601
MfeI	CAATTG	1 cut(s)	1845
MflI	RGATCY	3 cut(s)	1087, 1304, 2016
MhlI	GDGCHC	4 cut(s)	502, 1032, 1222, 1913
MlyI	GAGTC	4 cut(s)	406, 870, 895, 1940
MmeI	TCCRAC	2 cut(s)	1725, 1859
Mph1103I	ATGCAT	1 cut(s)	1001
MroXI	GAANNNNTTC	2 cut(s)	815, 928
MseI	TTAA	8 cut(s)	45, 108, 119, 390, 776, 873, 1434, 1647
MslI	CAYNNNNRTG	3 cut(s)	564, 618, 764
MspA1I	CMGCKG	6 cut(s)	368, 421, 680, 1193, 1526, 1903
MspI	CCGG	2 cut(s)	1449, 1894
MspR9I	CCNGG	6 cut(s)	735, 953, 1257, 1329, 1497, 1894
MunI	CAATTG	1 cut(s)	1845
Mva1269I	GAATGC	1 cut(s)	1479
MvaI	CCWGG	5 cut(s)	735, 953, 1257, 1329, 1497
MvnI	CGCG	3 cut(s)	291, 421, 1477
NciI	CCSGG	1 cut(s)	1894
NdeII	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
NlaIV	GGNNCC	4 cut(s)	220, 425, 1447, 1501
NmuCI	GTSAC	3 cut(s)	361, 1013, 1639
NotI	GCGGCCGC	1 cut(s)	1898
NruI	TCGCGA	1 cut(s)	291
NsiI	ATGCAT	1 cut(s)	1001
NspI	RCATGY	6 cut(s)	80, 211, 593, 647, 1012, 1738
NspV	TTCGAA	1 cut(s)	1938
PaeI	GCATGC	1 cut(s)	647
PagI	TCATGA	1 cut(s)	1483
PceI	AGGCCT	3 cut(s)	387, 1336, 1725
PciI	ACATGT	3 cut(s)	76, 589, 1734
PctI	GAATGC	1 cut(s)	1479
PdmI	GAANNNNTTC	2 cut(s)	815, 928
PfeI	GAWTC	3 cut(s)	167, 473, 525
PleI	GAGTC	4 cut(s)	406, 869, 895, 1940
PpsI	GAGTC	4 cut(s)	406, 869, 895, 1940
PscI	ACATGT	3 cut(s)	76, 589, 1734
PshBI	ATTAAT	2 cut(s)	45, 108
PsiI	TTATAA	1 cut(s)	1128
Psp6I	CCWGG	5 cut(s)	733, 951, 1255, 1327, 1495
PspFI	CCCAGC	2 cut(s)	653, 1189
PspGI	CCWGG	5 cut(s)	733, 951, 1255, 1327, 1495
PspN4I	GGNNCC	4 cut(s)	220, 425, 1447, 1501
PspPI	GGNCC	1 cut(s)	1377
PstNI	CAGNNNCTG	1 cut(s)	1637
PsuI	RGATCY	3 cut(s)	1087, 1304, 2016
PvuII	CAGCTG	2 cut(s)	368, 680
RruI	TCGCGA	1 cut(s)	291
RsaI	GTAC	7 cut(s)	337, 489, 659, 801, 1501, 1983, 2000
RsaNI	GTAC	7 cut(s)	336, 488, 658, 800, 1500, 1982, 1999
RseI	CAYNNNNRTG	3 cut(s)	564, 618, 764
SacII	CCGCGG	1 cut(s)	422
SaqAI	TTAA	8 cut(s)	45, 108, 119, 390, 776, 873, 1434, 1647
Sau3AI	GATC	8 cut(s)	9, 51, 100, 1087, 1304, 1360, 1829, 2016
Sau96I	GGNCC	1 cut(s)	1377
SchI	GAGTC	4 cut(s)	406, 870, 895, 1940
ScrFI	CCNGG	6 cut(s)	735, 953, 1257, 1329, 1497, 1894
SduI	GDGCHC	4 cut(s)	502, 1032, 1222, 1913
SfaNI	GCATC	5 cut(s)	334, 622, 986, 1525, 1961
SfcI	CTRYAG	1 cut(s)	1033
Sfr303I	CCGCGG	1 cut(s)	422
SfuI	TTCGAA	1 cut(s)	1938
SgrBI	CCGCGG	1 cut(s)	422
SinI	GGWCC	1 cut(s)	1377
SmiMI	CAYNNNNRTG	3 cut(s)	564, 618, 764
SmlI	CTYRAG	3 cut(s)	959, 1545, 1685
SmoI	CTYRAG	3 cut(s)	959, 1545, 1685
SphI	GCATGC	1 cut(s)	647
SseBI	AGGCCT	3 cut(s)	387, 1336, 1725
SsiI	CCGC	7 cut(s)	419, 421, 940, 1193, 1524, 1897, 1901
SspMI	CTAG	2 cut(s)	650, 905
StuI	AGGCCT	3 cut(s)	387, 1336, 1725
StyD4I	CCNGG	6 cut(s)	733, 951, 1255, 1327, 1495, 1892
StyI	CCWWGG	1 cut(s)	1141
TaiI	ACGT	1 cut(s)	1707
TaqI	TCGA	5 cut(s)	161, 864, 897, 976, 1938
TatI	WGTACW	3 cut(s)	335, 487, 1998
TauI	GCSGC	4 cut(s)	1196, 1526, 1900, 1903
TfiI	GAWTC	3 cut(s)	167, 473, 525
Tru1I	TTAA	8 cut(s)	45, 108, 119, 390, 776, 873, 1434, 1647
Tru9I	TTAA	8 cut(s)	45, 108, 119, 390, 776, 873, 1434, 1647
TscAI	CASTG	9 cut(s)	200, 712, 729, 1027, 1042, 1252, 1513, 1638, 1918
TseFI	GTSAC	3 cut(s)	361, 1013, 1639
TseI	GCWGC	6 cut(s)	448, 610, 680, 942, 1211, 1751
Tsp45I	GTSAC	3 cut(s)	361, 1013, 1639
TspGWI	ACGGA	4 cut(s)	113, 1008, 1108, 1304
TspRI	CASTG	9 cut(s)	200, 712, 729, 1027, 1042, 1252, 1513, 1638, 1918
VneI	GTGCAC	1 cut(s)	1909
VpaK11BI	GGWCC	1 cut(s)	1377
VspI	ATTAAT	2 cut(s)	45, 108
XapI	RAATTY	3 cut(s)	626, 979, 1148
XceI	RCATGY	6 cut(s)	80, 211, 593, 647, 1012, 1738
XmnI	GAANNNNTTC	2 cut(s)	815, 928
XspI	CTAG	2 cut(s)	650, 905
ZraI	GACGTC	1 cut(s)	1705
Zsp2I	ATGCAT	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.