Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010409.1

Orthogroup ID

OG0000881

Physical Location & Seq

Genomic Coordinates Forward (+)

7233 .. 11663

Gene Structure 4431 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010409.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

atgactgtcactccaaacatttccatcaacgatggaaacctggtggttcacggaaagaccatattgaccggagtgccggaaaacattgtgctcactccaggatccggcgtcggcctcgttgctggtgctttcattggcgccaccgcctctcacagcaaaagcctccatgtcttccctgtcggtgttttagagggtcagcggttcatgtgccttttccggtttaagctgtggtggatgacgcagaggatggggtcatgtgggaaagaagttccgctggagacccaattcatgcttgtggagaccaaggacgatggtgaaggaagtgatgggtcctcttctaccatttacaccgtcttccttcctctgctggagggccagttccgttcggttctgcaagggaacgagcggaatgaagtggagatatgcctcgagagtggagattctgatgtgcagaccaatcaaggtctttgccttgtttacgtgcatgctggaactaatccatttgaagttatcaaccaggctgtgaaggctgtagaaaaacacatgcaaacctttgtccatcgtgagaagaaaaagttgccttctttcctcgactggtttggctggtgcacatgggatgctttctataccgatgtcacagctgagggtgtcgtggatggtcttaaaagcttgaatgagggagggacgcctccgcgatttctaatcgtagatgatggttggcaacaaattgaaagtaaacccaaggatactaatgttgcagtacaagaaggagcacagtttgcaagtaggcttacaggaataaaagagaatgaaaaattccaaaagaatggacagagtgagcaagtctcaggcctgaaacatgttgttgatgaagcgaagcagcatcacaatgtgaagtttgtgtacgtatggcatgccttagttgggtactggggtggagtgaaaccagctgcttctggcatggagcattatgacactgctttggcttatccagtctcatctcctggtgtgatgggaaaccaacctgacatagtttttgacagcttatctgttcatggtcttggtttggtgcatccaaagaaagttttcaatttctacaatgagcttcatgcgtatttgtcttcctgtggagtggatggagttaaggttgatgtacagaacatcattgagactcttgggtctggtcatggtggcagagtttctctgacccgaagctatcaccaggcactggaggcttcagttgctcggaactttcctgacaacggatgcatttcttgcatgtgtcataacactgatgggctatatagttccaagcagactgctgttgtgagagcttctgatgacttctacccacgggatcctgcttctcacacgattcatatatcttctgtggcttataacactcttttccttggcgagtttatgcaaccagactgggatatgtttcatagtttacatccagcagcggattatcatggtgcagctcgttctattggtggatgtgcaatctatgtcagtgataaacctggaaaccacaacttcgatcttttgaggaagctggtcctgcctgatggatctgtcctccgtgctcaattacctggtaggccaacatgtgattgtctctttgctgacccagcaagagatggaaccagcttgctcaagatatggaatgtgaacaagtgctctggtgttgttggtgtattcaactgtcaaggggccggttggtgcaaggttgaaaagaagacccgcatccatgatgcatctcctggtaccctcactggttctgttcgtgctattgatgttgatagccttgcccaaattgctggtgatgattggaatggagaaacagtagtttatgcccataagtcaggagaggtgtttcgtttaccaaaagatgtttcagtgccagtgacacttaaagttctggagtatgagctcttccatttctgtcctctcaaggaggttacacccaacatctcatttgctccaataggcctgcttgacatgttcaactccagtggtgctgtggagcatgttgtaatccatctggcttctgacggcgaagtttcttcggagcttaccacttctctcagtgagaatagatcttcaactgccacagtcaccatcaaaaccagaggatgtggaaggtttggagcttactcttctcagcgtcccctgaagtgtaccgttgatagagttgagacggactttgaatatgaccctgcaactggattactaacctttaccatccctatcccaaaagaggatatgtataaatggctagtagaaatccaagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004557 GO:0005575 GO:0005911 GO:0005975 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009311 GO:0009313 GO:0009506 GO:0009628 GO:0015925 GO:0016052 GO:0016787 GO:0016798 GO:0030054 GO:0033530 GO:0034484 GO:0044238 GO:0050896 GO:0052692 GO:0055044 GO:0071704 GO:0080167 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00052 map00052

Pfam Domains

Protein Families

Raffinose_syn

Protein Analysis

766

Amino Acids

83.82

Weight (kDa)

5.72

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000881)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G57520 AT3G57520 AT3G57520
fragaria_vesca	FvH4_3g00160 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550 FvH4_6g23550
malus_domestica	MD09G1161700.v1.1 MD09G1162100.v1.1 MD10G1341400.v1.1 MD10G1341500.v1.1 MD10G1341600.v1.1 MD12G1077800.v1.1 MD14G1070300.v1.1
prunus_persica	Prupe.4G001700_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.5G162400_v2.0.a1 Prupe.7G064000_v2.0.a1 Prupe.7G064000_v2.0.a1
pyrus_communis	pycom10g29090 pycom12g06210 pycom14g05800 pycom14g05880 pycom14g05890 pycom14g05910 pycom14g05930
rosa_chinensis	RchiOBHm_Chr3g0481621 RchiOBHm_Chr5g0000211 RchiOBHm_Chr7g0192011 RchiOBHm_Chr7g0192021
rosa_laevigata	RLG00000004409 RLG00000023385 RLG00000030850
rosa_multiflora	Rmu_co8093432.1_g000001 Rmu_co8314355.1_g000001 Rmu_sc0010409.1_g000002 Rmu_sc0021936.1_g000002 Rmu_ssc0000243.1_g000010 Rmu_ssc0000421.1_g000033
rosa_roxburghii	Rroxscaffold_1G00075890 Rroxscaffold_3G00263360 Rroxscaffold_6G00400310
rosa_rugosa	Rorug03G0192700 Rorug03G0192800 Rorug03G0192900 Rorug04G0382500 Rorug06G0512300 Rorug06G0512300
rosa_samantha	Rh3AG244100 Rh3BG279100 Rh3BG279300 Rh3CG274100 Rh3DG270900 Rh5AG001400 Rh5BG002800 Rh5CG001700 Rh5DG001600 Rh7AG122700 Rh7AG122800 Rh7BG124300 Rh7CG127000 Rh7DG125800
rosa_wichuraiana	Rw3G021800 Rw5G000190 Rw7G010450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1398
AasI	GACNNNNNNGTC	1 cut(s)	1177
Acc65I	GGTACC	1 cut(s)	1769
AccB1I	GGYRCC	2 cut(s)	137, 1769
AccB7I	CCANNNNNTGG	1 cut(s)	1228
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	1 cut(s)	694
AciI	CCGC	7 cut(s)	144, 199, 272, 406, 692, 1466, 1747
AclWI	GGATC	5 cut(s)	96, 109, 1352, 1365, 1582
AcsI	RAATTY	1 cut(s)	815
AcuI	CTGAAG	2 cut(s)	1221, 2198
AcyI	GRCGYC	3 cut(s)	108, 138, 686
AdeI	CACNNNGTG	1 cut(s)	892
AfaI	GTAC	6 cut(s)	762, 905, 929, 1155, 1771, 2185
AfiI	CCNNNNNNNGG	6 cut(s)	104, 924, 1228, 1262, 2228, 2263
AflIII	ACRYGT	3 cut(s)	859, 1610, 2004
AgsI	TTSAA	9 cut(s)	506, 673, 731, 1090, 1705, 1736, 2011, 2109, 2213
AjnI	CCWGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
AjuI	GAANNNNNNNTTGG	2 cut(s)	1882, 1914
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
Alw21I	GWGCWC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
Alw26I	GTCTC	7 cut(s)	272, 293, 850, 1000, 1163, 1625, 2195
Alw44I	GTGCAC	1 cut(s)	607
AlwI	GGATC	5 cut(s)	96, 109, 1352, 1365, 1582
AlwNI	CAGNNNCTG	1 cut(s)	1228
Ama87I	CYCGRG	1 cut(s)	428
AoxI	GGCC	6 cut(s)	112, 373, 850, 1604, 1716, 1993
ApaLI	GTGCAC	1 cut(s)	607
ApeKI	GCWGC	4 cut(s)	880, 950, 1463, 1481
ApoI	RAATTY	1 cut(s)	815
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
Asp700I	GAANNNNTTC	1 cut(s)	1085
Asp718I	GGTACC	1 cut(s)	1769
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	330, 373, 1561, 1716
AsuHPI	GGTGA	4 cut(s)	326, 1211, 1838, 2113
AvaI	CYCGRG	1 cut(s)	428
AvaII	GGWCC	2 cut(s)	330, 1561
BaeGI	GKGCMC	1 cut(s)	611
BaeI	ACNNNNGTAYC	4 cut(s)	738, 771, 919, 952
BamHI	GGATCC	2 cut(s)	101, 1357
BanI	GGYRCC	2 cut(s)	137, 1769
BanII	GRGCYC	1 cut(s)	1938
BarI	GAAGNNNNNNTAC	4 cut(s)	887, 919, 1922, 1954
BbsI	GAAGAC	4 cut(s)	163, 346, 1113, 1748
Bbv12I	GWGCWC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	4 cut(s)	892, 937, 1475, 1493
BceAI	ACGGC	1 cut(s)	2074
BciT130I	CCWGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
BciVI	GTATCC	1 cut(s)	739
BcoDI	GTCTC	7 cut(s)	272, 293, 850, 1000, 1163, 1625, 2195
BfaI	CTAG	1 cut(s)	2282
BfmI	CTRYAG	1 cut(s)	531
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	739
BglII	AGATCT	1 cut(s)	2102
BisI	GCNGC	4 cut(s)	881, 951, 1464, 1482
BlsI	GCNGC	4 cut(s)	882, 952, 1465, 1483
Bme1390I	CCNGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
Bme18I	GGWCC	2 cut(s)	330, 1561
BmeT110I	CYCGRG	1 cut(s)	428
BmgT120I	GGNCC	4 cut(s)	330, 373, 1561, 1716
BmiI	GGNNCC	7 cut(s)	103, 139, 331, 1359, 1648, 1717, 1771
BmrFI	CCNGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
BmrI	ACTGGG	2 cut(s)	940, 1444
BmsI	GCATC	7 cut(s)	607, 892, 1081, 1256, 1747, 1758, 1769
BmuI	ACTGGG	2 cut(s)	940, 1444
BpiI	GAAGAC	4 cut(s)	163, 346, 1113, 1748
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpmI	CTGGAG	6 cut(s)	81, 296, 389, 1250, 1946, 1999
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	2 cut(s)	1643, 1940
BsaAI	YACGTR	2 cut(s)	481, 907
BsaHI	GRCGYC	3 cut(s)	108, 138, 686
BsaI	GGTCTC	2 cut(s)	272, 293
BsaJI	CCNNGG	4 cut(s)	303, 741, 1352, 1411
BsaWI	WCCGGW	2 cut(s)	68, 216
BsaXI	ACNNNNNCTCC	7 cut(s)	25, 362, 392, 1131, 1161, 1833, 1863
Bsc4I	CCNNNNNNNGG	6 cut(s)	104, 924, 1228, 1262, 2228, 2263
Bse118I	RCCGGY	1 cut(s)	1718
BseBI	CCWGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
BseDI	CCNNGG	4 cut(s)	303, 741, 1352, 1411
BseLI	CCNNNNNNNGG	6 cut(s)	104, 924, 1228, 1262, 2228, 2263
BseMII	CTCAG	4 cut(s)	633, 861, 2104, 2180
BseSI	GKGCMC	1 cut(s)	611
BseXI	GCAGC	4 cut(s)	892, 937, 1475, 1493
BseYI	CCCAGC	1 cut(s)	1633
BsgI	GTGCAG	2 cut(s)	470, 1500
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	6 cut(s)	114, 375, 852, 1606, 1718, 1995
BshNI	GGYRCC	2 cut(s)	137, 1769
BsiHKAI	GWGCWC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
BsiHKCI	CYCGRG	1 cut(s)	428
BsiSI	CCGG	5 cut(s)	69, 77, 105, 217, 1719
BslFI	GGGAC	2 cut(s)	697, 2157
BslI	CCNNNNNNNGG	6 cut(s)	104, 924, 1228, 1262, 2228, 2263
BsmAI	GTCTC	7 cut(s)	272, 293, 850, 1000, 1163, 1625, 2195
BsmBI	CGTCTC	1 cut(s)	2195
BsmFI	GGGAC	2 cut(s)	697, 2157
BsnI	GGCC	6 cut(s)	114, 375, 852, 1606, 1718, 1995
Bso31I	GGTCTC	2 cut(s)	272, 293
BsoBI	CYCGRG	1 cut(s)	428
Bsp1286I	GDGCHC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
Bsp1407I	TGTACA	1 cut(s)	1153
Bsp143I	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
BspACI	CCGC	7 cut(s)	144, 199, 272, 406, 692, 1466, 1747
BspANI	GGCC	6 cut(s)	114, 375, 852, 1606, 1718, 1995
BspCNI	CTCAG	4 cut(s)	634, 860, 2103, 2179
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	7 cut(s)	103, 139, 331, 1359, 1648, 1717, 1771
BspPI	GGATC	5 cut(s)	96, 109, 1352, 1365, 1582
BspQI	GCTCTTC	1 cut(s)	1943
BspT107I	GGYRCC	2 cut(s)	137, 1769
BspTNI	GGTCTC	2 cut(s)	272, 293
BsrBI	CCGCTC	1 cut(s)	406
BsrFI	RCCGGY	1 cut(s)	1718
BsrGI	TGTACA	1 cut(s)	1153
BssAI	RCCGGY	1 cut(s)	1718
BssECI	CCNNGG	4 cut(s)	303, 741, 1352, 1411
BssMI	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
BssNI	GRCGYC	3 cut(s)	108, 138, 686
BssT1I	CCWWGG	3 cut(s)	303, 741, 1411
Bst2UI	CCWGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
Bst4CI	ACNGT	7 cut(s)	7, 352, 777, 1709, 1849, 2119, 2188
Bst6I	CTCTTC	3 cut(s)	340, 1943, 2167
BstACI	GRCGYC	3 cut(s)	108, 138, 686
BstAPI	GCANNNNNTGC	2 cut(s)	779, 1275
BstAUI	TGTACA	1 cut(s)	1153
BstBAI	YACGTR	2 cut(s)	481, 907
BstC8I	GCNNGC	4 cut(s)	486, 915, 1655, 1997
BstDEI	CTNAG	5 cut(s)	642, 847, 919, 2090, 2166
BstDSI	CCRYGG	1 cut(s)	1352
BstFNI	CGCG	1 cut(s)	694
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	5 cut(s)	104, 1360, 1546, 1577, 2105
BstMAI	GTCTC	7 cut(s)	272, 293, 850, 1000, 1163, 1625, 2195
BstMBI	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
BstMWI	GCNNNNNNNGC	8 cut(s)	527, 779, 1232, 1241, 1275, 1564, 1634, 1820
BstNI	CCWGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
BstNSI	RCATGY	8 cut(s)	488, 547, 863, 917, 1282, 1614, 2008, 2036
BstSCI	CCNGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	611
BstSNI	TACGTA	1 cut(s)	907
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	4 cut(s)	892, 937, 1475, 1493
BstV2I	GAAGAC	4 cut(s)	163, 346, 1113, 1748
BstX2I	RGATCY	4 cut(s)	101, 1357, 1574, 2102
BstXI	CCANNNNNNTGG	2 cut(s)	827, 1823
BstYI	RGATCY	4 cut(s)	101, 1357, 1574, 2102
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	6 cut(s)	114, 375, 852, 1606, 1718, 1995
BtgI	CCRYGG	1 cut(s)	1352
BtsI	GCAGTG	1 cut(s)	975
BtsIMutI	CAGTG	9 cut(s)	975, 1226, 1290, 1522, 1776, 1908, 1914, 2023, 2098
Cac8I	GCNNGC	4 cut(s)	486, 915, 1655, 1997
CaiI	CAGNNNCTG	1 cut(s)	1228
CfoI	GCGC	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	1718
Cfr13I	GGNCC	4 cut(s)	330, 373, 1561, 1716
CseI	GACGC	4 cut(s)	97, 247, 694, 2159
CsiI	ACCWGGT	2 cut(s)	39, 1597
Csp6I	GTAC	6 cut(s)	761, 904, 928, 1154, 1770, 2184
CspCI	CAANNNNNGTGG	2 cut(s)	1999, 2034
CviQI	GTAC	6 cut(s)	761, 904, 928, 1154, 1770, 2184
DdeI	CTNAG	5 cut(s)	642, 847, 919, 2090, 2166
DinI	GGCGCC	1 cut(s)	139
DpnI	GATC	5 cut(s)	103, 1359, 1545, 1576, 2104
DpnII	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
DraIII	CACNNNGTG	1 cut(s)	892
DrdI	GACNNNNNNGTC	1 cut(s)	1177
DseDI	GACNNNNNNGTC	1 cut(s)	1177
Eam1104I	CTCTTC	3 cut(s)	340, 1943, 2167
EarI	CTCTTC	3 cut(s)	340, 1943, 2167
Ecl136II	GAGCTC	1 cut(s)	1936
Eco105I	TACGTA	1 cut(s)	907
Eco130I	CCWWGG	3 cut(s)	303, 741, 1411
Eco147I	AGGCCT	2 cut(s)	852, 1995
Eco24I	GRGCYC	1 cut(s)	1938
Eco31I	GGTCTC	2 cut(s)	272, 293
Eco47I	GGWCC	2 cut(s)	330, 1561
Eco53kI	GAGCTC	1 cut(s)	1936
Eco57I	CTGAAG	2 cut(s)	1221, 2198
Eco88I	CYCGRG	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	1936
EcoO109I	RGGNCCY	1 cut(s)	330
EcoRII	CCWGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
EcoT14I	CCWWGG	3 cut(s)	303, 741, 1411
EcoT22I	ATGCAT	2 cut(s)	1271, 1762
EcoT38I	GRGCYC	1 cut(s)	1938
EgeI	GGCGCC	1 cut(s)	139
EheI	GGCGCC	1 cut(s)	139
ErhI	CCWWGG	3 cut(s)	303, 741, 1411
Esp3I	CGTCTC	1 cut(s)	2195
FaqI	GGGAC	2 cut(s)	697, 2157
FauI	CCCGC	1 cut(s)	1754
Fnu4HI	GCNGC	4 cut(s)	881, 951, 1464, 1482
FriOI	GRGCYC	1 cut(s)	1938
Fsp4HI	GCNGC	4 cut(s)	881, 951, 1464, 1482
FspBI	CTAG	1 cut(s)	2282
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	4 cut(s)	881, 951, 1464, 1482
GsaI	CCCAGC	1 cut(s)	1637
GsuI	CTGGAG	6 cut(s)	81, 296, 389, 1250, 1946, 1999
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	6 cut(s)	114, 375, 852, 1606, 1718, 1995
HapII	CCGG	5 cut(s)	69, 77, 105, 217, 1719
HgaI	GACGC	4 cut(s)	97, 247, 694, 2159
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	3 cut(s)	108, 138, 686
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	667
HinfI	GANTC	3 cut(s)	440, 1171, 1375
HpaII	CCGG	5 cut(s)	69, 77, 105, 217, 1719
HphI	GGTGA	4 cut(s)	326, 1211, 1838, 2113
Hpy166II	GTNNAC	9 cut(s)	49, 478, 609, 737, 904, 1454, 1675, 1886, 2184
Hpy188I	TCNGA	6 cut(s)	445, 1206, 1248, 1339, 2056, 2074
Hpy188III	TCNNGA	6 cut(s)	430, 563, 1256, 1660, 1869, 1925
Hpy8I	GTNNAC	9 cut(s)	49, 478, 609, 737, 904, 1454, 1675, 1886, 2184
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	6 cut(s)	311, 368, 520, 591, 761, 2139
HpyCH4III	ACNGT	7 cut(s)	7, 352, 777, 1709, 1849, 2119, 2188
HpyCH4IV	ACGT	2 cut(s)	480, 906
HpyF10VI	GCNNNNNNNGC	8 cut(s)	527, 779, 1232, 1241, 1275, 1564, 1634, 1820
HpyF3I	CTNAG	5 cut(s)	642, 847, 919, 2090, 2166
HpySE526I	ACGT	2 cut(s)	480, 906
Hsp92I	GRCGYC	3 cut(s)	108, 138, 686
HspAI	GCGC	1 cut(s)	138
KasI	GGCGCC	1 cut(s)	137
KpnI	GGTACC	1 cut(s)	1773
Kzo9I	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
LguI	GCTCTTC	1 cut(s)	1943
LmnI	GCTCC	6 cut(s)	770, 964, 1990, 2029, 2074, 2153
Lsp1109I	GCAGC	4 cut(s)	892, 937, 1475, 1493
LweI	GCATC	7 cut(s)	607, 892, 1081, 1256, 1747, 1758, 1769
MabI	ACCWGGT	2 cut(s)	39, 1597
MaeI	CTAG	1 cut(s)	2282
MaeII	ACGT	2 cut(s)	480, 906
MaeIII	GTNAC	5 cut(s)	7, 634, 1909, 1963, 2119
MalI	GATC	5 cut(s)	103, 1359, 1545, 1576, 2104
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
MflI	RGATCY	4 cut(s)	101, 1357, 1574, 2102
MhlI	GDGCHC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
MluCI	AATT	6 cut(s)	284, 726, 815, 1090, 1592, 1818
Mly113I	GGCGCC	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	1165
Mph1103I	ATGCAT	2 cut(s)	1271, 1762
MroXI	GAANNNNTTC	1 cut(s)	1085
MseI	TTAA	5 cut(s)	222, 663, 1143, 1917, 2299
MslI	CAYNNNNRTG	2 cut(s)	293, 888
MspA1I	CMGCKG	5 cut(s)	199, 274, 641, 950, 1466
MspI	CCGG	5 cut(s)	69, 77, 105, 217, 1719
MspR9I	CCNGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
MvaI	CCWGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	8 cut(s)	527, 779, 1232, 1241, 1275, 1564, 1634, 1820
NarI	GGCGCC	1 cut(s)	138
NdeII	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
NlaIV	GGNNCC	7 cut(s)	103, 139, 331, 1359, 1648, 1717, 1771
NmuCI	GTSAC	4 cut(s)	7, 634, 1909, 2119
NsiI	ATGCAT	2 cut(s)	1271, 1762
NspI	RCATGY	8 cut(s)	488, 547, 863, 917, 1282, 1614, 2008, 2036
PaeI	GCATGC	2 cut(s)	488, 917
PaeR7I	CTCGAG	1 cut(s)	428
PceI	AGGCCT	2 cut(s)	852, 1995
PciI	ACATGT	3 cut(s)	859, 1610, 2004
PciSI	GCTCTTC	1 cut(s)	1943
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	2 cut(s)	440, 1375
PflMI	CCANNNNNTGG	1 cut(s)	1228
PfoI	TCCNGGA	1 cut(s)	97
PkrI	GCNGC	4 cut(s)	882, 952, 1465, 1483
PleI	GAGTC	1 cut(s)	1165
PluTI	GGCGCC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	1165
Ppu21I	YACGTR	2 cut(s)	481, 907
PpuMI	RGGWCCY	1 cut(s)	330
PscI	ACATGT	3 cut(s)	859, 1610, 2004
PsiI	TTATAA	1 cut(s)	1398
Psp124BI	GAGCTC	1 cut(s)	1938
Psp5II	RGGWCCY	1 cut(s)	330
Psp6I	CCWGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
PspFI	CCCAGC	1 cut(s)	1633
PspGI	CCWGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
PspN4I	GGNNCC	7 cut(s)	103, 139, 331, 1359, 1648, 1717, 1771
PspPI	GGNCC	4 cut(s)	330, 373, 1561, 1716
PspPPI	RGGWCCY	1 cut(s)	330
PstNI	CAGNNNCTG	1 cut(s)	1228
PsuI	RGATCY	4 cut(s)	101, 1357, 1574, 2102
PvuII	CAGCTG	2 cut(s)	641, 950
RsaI	GTAC	6 cut(s)	762, 905, 929, 1155, 1771, 2185
RsaNI	GTAC	6 cut(s)	761, 904, 928, 1154, 1770, 2184
RseI	CAYNNNNRTG	2 cut(s)	293, 888
SacI	GAGCTC	1 cut(s)	1938
SapI	GCTCTTC	1 cut(s)	1943
SaqAI	TTAA	5 cut(s)	222, 663, 1143, 1917, 2299
SatI	GCNGC	4 cut(s)	881, 951, 1464, 1482
Sau3AI	GATC	5 cut(s)	101, 1357, 1543, 1574, 2102
Sau96I	GGNCC	4 cut(s)	330, 373, 1561, 1716
SchI	GAGTC	1 cut(s)	1165
ScrFI	CCNGG	8 cut(s)	41, 99, 518, 1005, 1223, 1527, 1599, 1767
SduI	GDGCHC	6 cut(s)	93, 611, 775, 1591, 1685, 1938
SexAI	ACCWGGT	2 cut(s)	39, 1597
SfaNI	GCATC	7 cut(s)	607, 892, 1081, 1256, 1747, 1758, 1769
SfcI	CTRYAG	1 cut(s)	531
SfoI	GGCGCC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	428
SinI	GGWCC	2 cut(s)	330, 1561
SlaI	CTCGAG	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	293, 888
SmlI	CTYRAG	3 cut(s)	428, 1658, 1955
SmoI	CTYRAG	3 cut(s)	428, 1658, 1955
SnaBI	TACGTA	1 cut(s)	907
SphI	GCATGC	2 cut(s)	488, 917
Sse9I	AATT	6 cut(s)	284, 726, 815, 1090, 1592, 1818
SseBI	AGGCCT	2 cut(s)	852, 1995
SsiI	CCGC	7 cut(s)	144, 199, 272, 406, 692, 1466, 1747
SspDI	GGCGCC	1 cut(s)	137
SspMI	CTAG	1 cut(s)	2282
SstI	GAGCTC	1 cut(s)	1938
StuI	AGGCCT	2 cut(s)	852, 1995
StyD4I	CCNGG	8 cut(s)	39, 97, 516, 1003, 1221, 1525, 1597, 1765
StyI	CCWWGG	3 cut(s)	303, 741, 1411
TaaI	ACNGT	7 cut(s)	7, 352, 777, 1709, 1849, 2119, 2188
TaiI	ACGT	2 cut(s)	483, 909
TaqI	TCGA	3 cut(s)	429, 591, 1542
TasI	AATT	6 cut(s)	284, 726, 815, 1090, 1592, 1818
TatI	WGTACW	2 cut(s)	760, 1153
TfiI	GAWTC	2 cut(s)	440, 1375
Tru1I	TTAA	5 cut(s)	222, 663, 1143, 1917, 2299
Tru9I	TTAA	5 cut(s)	222, 663, 1143, 1917, 2299
TscAI	CASTG	9 cut(s)	982, 1233, 1297, 1522, 1783, 1908, 1914, 2023, 2098
TseFI	GTSAC	4 cut(s)	7, 634, 1909, 2119
TseI	GCWGC	4 cut(s)	880, 950, 1463, 1481
Tsp45I	GTSAC	4 cut(s)	7, 634, 1909, 2119
TspGWI	ACGGA	5 cut(s)	66, 371, 1278, 1574, 2219
TspRI	CASTG	9 cut(s)	982, 1233, 1297, 1522, 1783, 1908, 1914, 2023, 2098
Van91I	CCANNNNNTGG	1 cut(s)	1228
VneI	GTGCAC	1 cut(s)	607
VpaK11BI	GGWCC	2 cut(s)	330, 1561
XapI	RAATTY	1 cut(s)	815
XceI	RCATGY	8 cut(s)	488, 547, 863, 917, 1282, 1614, 2008, 2036
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2023
XhoI	CTCGAG	1 cut(s)	428
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	1 cut(s)	2282
Zsp2I	ATGCAT	2 cut(s)	1271, 1762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.