Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

27044378 .. 27046531

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34262.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGCAGAGAATGGCGATTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGGTAACCATGGAATGGTGGACTGATTTATGGCTTAATGAAGGTTTTGCGACATGGATAAGCTATTTGGCCACTGATATTTTGTTTCCTGAGTGGAAAGTTTGGTCTCAATTTCTTCAACAGACTACTGGTGGCTTAGTTATTGATGCCCTGGAACAATCACATCCAATTCAGGTGGAGGTAAACCACGCACGTTCAGTTCTTGAAATATTCGATGCTATCAGCTATAAAAAGGGATCTGCTGTTATACGAATGCTGCAGGCTTATCTTGGTGATGACATATTCCAGAAATTGTTAAGTTCCTATATGAAAAGATTTTCTGGAAAGAATGCAAAGACAGAAGATTTATGGAGCGTTCTTTCGGAGGAATCTGGTGTCAAAATCAGTGAAATGATGGATGATTGGACTAAGAAACAAGGATATCCTGTGATCTCTGTAAAAGTGAAGGATCATATTTTGGAATTCGAGCAGGCACAGTTTCTATCAGCAGGTTTGCTCGGTGATGGTGAGTGGATTGTTCCAATAACTATTTCATTCGGTTCATACGAGAGGCGCAAGAATTTCCTTTTGGAAACAAAGTCCAGTGAAGTTGACGTATCAGATCTTGTTAGCTCCTCCCATACTAAGTTAACGAATAAAGAGATATGCGATGAACAACTGTGGGTCAAGGTCAATGTCGAGCAGAGTGGTTTCTATAGAGTAAGGTATGAAGATAAGCTAGCAGCTCGACTTAGGAAGGCTATTGAGCATAATAACTTGGAAGCAACAGACAAATTTGGCATTCTGGATGATGCGCATGCCCTTTGCGAAGCTTGTGAACAGTCTCTGTCATCTTTGCTTTGCTTAATGGATGTATACAGAAAGGAAGTTGATTATATTGTCTTATCAAAACTTATAGACGGAAGTATGCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

324

Amino Acids

37.05

Weight (kDa)

5.07

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	2 - 154	1.5e-57	Peptidase family M1 domain
ERAP1_C	PF11838	240 - 319	7.5e-19	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	536
AccB7I	CCANNNNNTGG	1 cut(s)	72
AccI	GTMKAC	1 cut(s)	912
AclWI	GGATC	2 cut(s)	301, 513
AcoI	YGGCCR	1 cut(s)	126
AcsI	RAATTY	3 cut(s)	518, 616, 830
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	176, 263
AjnI	CCWGG	1 cut(s)	207
AjuI	GAANNNNNNNTTGG	4 cut(s)	571, 603, 608, 640
AleI	CACNNNNGTG	1 cut(s)	43
AluBI	AGCT	6 cut(s)	120, 282, 669, 775, 782, 869
AluI	AGCT	6 cut(s)	120, 282, 669, 775, 782, 869
Alw26I	GTCTC	2 cut(s)	168, 885
AlwI	GGATC	2 cut(s)	301, 513
AlwNI	CAGNNNCTG	1 cut(s)	883
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	2 cut(s)	313, 779
ApoI	RAATTY	3 cut(s)	518, 616, 830
AspLEI	GCGC	2 cut(s)	612, 853
AsuHPI	GGTGA	3 cut(s)	341, 569, 575
AsuNHI	GCTAGC	1 cut(s)	775
BalI	TGGCCA	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	300, 791
BccI	CCATC	2 cut(s)	445, 554
BciT130I	CCWGG	1 cut(s)	209
BcoDI	GTCTC	2 cut(s)	168, 885
BfaI	CTAG	1 cut(s)	776
BfmI	CTRYAG	2 cut(s)	314, 751
BfuAI	ACCTGC	1 cut(s)	536
BglII	AGATCT	1 cut(s)	658
BisI	GCNGC	2 cut(s)	314, 780
BlsI	GCNGC	2 cut(s)	315, 781
Bme1390I	CCNGG	1 cut(s)	209
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	193, 262, 838
BmtI	GCTAGC	1 cut(s)	779
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	2 cut(s)	66, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	190, 639
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	66, 207
BseGI	GGATG	4 cut(s)	220, 460, 850, 913
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	190, 639
BseRI	GAGGAG	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	300, 791
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	2 cut(s)	168, 885
BsmI	GAATGC	3 cut(s)	315, 391, 837
BsnI	GGCC	1 cut(s)	128
Bso31I	GGTCTC	1 cut(s)	168
Bsp143I	GATC	4 cut(s)	293, 486, 505, 658
Bsp19I	CCATGG	1 cut(s)	66
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	1 cut(s)	139
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	1 cut(s)	536
BspOI	GCTAGC	1 cut(s)	779
BspPI	GGATC	2 cut(s)	301, 513
BspTNI	GGTCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	190, 639
BssECI	CCNNGG	2 cut(s)	66, 207
BssMI	GATC	4 cut(s)	293, 486, 505, 658
BssNAI	GTATAC	1 cut(s)	913
BssT1I	CCWWGG	1 cut(s)	66
Bst1107I	GTATAC	1 cut(s)	913
Bst2UI	CCWGG	1 cut(s)	209
Bst4CI	ACNGT	3 cut(s)	534, 717, 879
BstC8I	GCNNGC	4 cut(s)	318, 528, 777, 855
BstDEI	CTNAG	5 cut(s)	147, 193, 465, 681, 788
BstDSI	CCRYGG	1 cut(s)	66
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	220, 460, 850, 913
BstHHI	GCGC	2 cut(s)	612, 853
BstKTI	GATC	4 cut(s)	296, 489, 508, 661
BstMAI	GTCTC	2 cut(s)	168, 885
BstMBI	GATC	4 cut(s)	293, 486, 505, 658
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	857
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	2 cut(s)	314, 751
BstV1I	GCAGC	2 cut(s)	300, 791
BstX2I	RGATCY	2 cut(s)	293, 658
BstYI	RGATCY	2 cut(s)	293, 658
BstZ17I	GTATAC	1 cut(s)	913
BsuRI	GGCC	1 cut(s)	128
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	720
BtsCI	GGATG	4 cut(s)	220, 460, 850, 913
BtsIMutI	CAGTG	4 cut(s)	50, 129, 448, 646
BveI	ACCTGC	1 cut(s)	536
Cac8I	GCNNGC	4 cut(s)	318, 528, 777, 855
CaiI	CAGNNNCTG	1 cut(s)	883
CfoI	GCGC	2 cut(s)	612, 853
CspCI	CAANNNNNGTGG	2 cut(s)	213, 248
CviAII	CATG	4 cut(s)	29, 67, 111, 854
DdeI	CTNAG	5 cut(s)	147, 193, 465, 681, 788
DpnI	GATC	4 cut(s)	295, 488, 507, 660
DpnII	GATC	4 cut(s)	293, 486, 505, 658
EaeI	YGGCCR	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	66
Eco31I	GGTCTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	479
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	518
EcoRII	CCWGG	1 cut(s)	207
EcoRV	GATATC	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	32, 70, 114, 857
FatI	CATG	4 cut(s)	28, 66, 110, 853
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	2 cut(s)	314, 780
FokI	GGATG	4 cut(s)	207, 467, 857, 920
Fsp4HI	GCNGC	2 cut(s)	314, 780
FspAI	RTGCGCAY	1 cut(s)	852
FspBI	CTAG	1 cut(s)	776
FspI	TGCGCA	1 cut(s)	852
GlaI	GCGC	2 cut(s)	611, 852
GluI	GCNGC	2 cut(s)	314, 780
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	612, 853
Hin1II	CATG	4 cut(s)	32, 70, 114, 857
Hin6I	GCGC	2 cut(s)	610, 851
HinP1I	GCGC	2 cut(s)	610, 851
HincII	GTYRAC	2 cut(s)	649, 687
HindII	GTYRAC	2 cut(s)	649, 687
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	1 cut(s)	425
HpaI	GTTAAC	1 cut(s)	687
HphI	GGTGA	3 cut(s)	341, 569, 575
Hpy166II	GTNNAC	6 cut(s)	78, 241, 649, 687, 875, 913
Hpy188I	TCNGA	2 cut(s)	421, 658
Hpy188III	TCNNGA	5 cut(s)	146, 260, 343, 378, 842
Hpy8I	GTNNAC	6 cut(s)	78, 241, 649, 687, 875, 913
HpyAV	CCTTC	3 cut(s)	92, 496, 787
HpyCH4III	ACNGT	3 cut(s)	534, 717, 879
HpyCH4IV	ACGT	2 cut(s)	250, 651
HpyCH4V	TGCA	3 cut(s)	4, 316, 389
HpyF3I	CTNAG	5 cut(s)	147, 193, 465, 681, 788
HpySE526I	ACGT	2 cut(s)	250, 651
Hsp92II	CATG	4 cut(s)	32, 70, 114, 857
HspAI	GCGC	2 cut(s)	610, 851
KspAI	GTTAAC	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	293, 486, 505, 658
LmnI	GCTCC	2 cut(s)	408, 674
Lsp1109I	GCAGC	2 cut(s)	300, 791
LweI	GCATC	3 cut(s)	193, 262, 838
MaeI	CTAG	1 cut(s)	776
MaeII	ACGT	2 cut(s)	250, 651
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	4 cut(s)	295, 488, 507, 660
MboI	GATC	4 cut(s)	293, 486, 505, 658
MboII	GAAGA	3 cut(s)	164, 410, 779
MflI	RGATCY	2 cut(s)	293, 658
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	6 cut(s)	167, 225, 347, 518, 616, 830
MluNI	TGGCCA	1 cut(s)	128
MnlI	CCTC	4 cut(s)	229, 415, 600, 682
Mox20I	TGGCCA	1 cut(s)	128
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	4 cut(s)	93, 353, 686, 902
MslI	CAYNNNNRTG	1 cut(s)	43
Msp20I	TGGCCA	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	3 cut(s)	315, 391, 837
MvaI	CCWGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	4 cut(s)	293, 486, 505, 658
NheI	GCTAGC	1 cut(s)	775
NlaIII	CATG	4 cut(s)	32, 70, 114, 857
NsbI	TGCGCA	1 cut(s)	852
NspI	RCATGY	1 cut(s)	857
OliI	CACNNNNGTG	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	857
PcsI	WCGNNNNNNNCGW	1 cut(s)	600
PctI	GAATGC	3 cut(s)	315, 391, 837
PfeI	GAWTC	1 cut(s)	425
PflMI	CCANNNNNTGG	1 cut(s)	72
PkrI	GCNGC	2 cut(s)	315, 781
Psp6I	CCWGG	1 cut(s)	207
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	318
PstNI	CAGNNNCTG	1 cut(s)	883
PsuI	RGATCY	2 cut(s)	293, 658
RseI	CAYNNNNRTG	1 cut(s)	43
SaqAI	TTAA	4 cut(s)	93, 353, 686, 902
SatI	GCNGC	2 cut(s)	314, 780
Sau3AI	GATC	4 cut(s)	293, 486, 505, 658
ScrFI	CCNGG	1 cut(s)	209
SfaNI	GCATC	3 cut(s)	193, 262, 838
SfcI	CTRYAG	2 cut(s)	314, 751
SmiMI	CAYNNNNRTG	1 cut(s)	43
SphI	GCATGC	1 cut(s)	857
Sse9I	AATT	6 cut(s)	167, 225, 347, 518, 616, 830
SspI	AATATT	1 cut(s)	267
SspMI	CTAG	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	3 cut(s)	534, 717, 879
TaiI	ACGT	2 cut(s)	253, 654
TaqI	TCGA	4 cut(s)	270, 522, 735, 784
TasI	AATT	6 cut(s)	167, 225, 347, 518, 616, 830
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	4 cut(s)	93, 353, 686, 902
Tru9I	TTAA	4 cut(s)	93, 353, 686, 902
TscAI	CASTG	4 cut(s)	50, 136, 448, 646
TseI	GCWGC	2 cut(s)	313, 779
TspDTI	ATGAA	7 cut(s)	45, 111, 380, 579, 588, 723, 780
TspGWI	ACGGA	1 cut(s)	972
TspRI	CASTG	4 cut(s)	50, 136, 448, 646
Van91I	CCANNNNNTGG	1 cut(s)	72
XapI	RAATTY	3 cut(s)	518, 616, 830
XceI	RCATGY	1 cut(s)	857
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	1 cut(s)	776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.