Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

1415193 .. 1420972

Gene Structure 5780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2304 bp

ATGTCACAGTTCAAAGGCCAAGCTCGGCTTCCCAAATTCGCCGTGCCGAAACGCTACGACGTAAGGCTCAGACCCGACCTCGTCGCCTGCCAATTCGTCGGCTCCGTCGCCATCGACCTCGACATCGTCTCCGCTACCCGCTTCATCGTCCTCAACGCCGCCGAGCTCTCCGTCAACCCCCCTGCCGTGTCTTTCACTCAACTAGACTCTTCCAAGGTTTTCAAGCCATCGAAAGTTGACGGGTTTGAAGATGATGGCATTTTGGTTATGGAGTTTGAGGAGACGATTCCTGTTGGGCTGGGAGTTTTGGCTATTGGGTTTCAAGGAGTTTTGAATGACAAGATGAAGGGATTCTATAGAAGTACATATGAGCATAATGGGGAGAAGAAAAACATGGCTGTTACACAGTTTGAACCGGTTGATGCCAGGCGCTGCTTTCCGTGTTGGGATGAACCTGCTTGCAAGGCTACATTCAAACTTACATTGGAAGATGTACCATCTGAATTGGTAGCTCTTTCCAACATGCCGGTTTCACAAGAAAAAGTGAATGGACATTGGAAGACAGTTTCATATCAGGAGACACCAATTATGTCTACATATTTGGTGGCCATTGTTGTTGGGTTGTTCGATTACGTTGAAGATCACACTTCTGATGGGGTCAAAGTGAGGGTCTATTGTCAAGTTGGTAGGGAAACCCAAGGGAAATTTGCTTTGCAGGTTGCTGTCAAGACACTTGAATTGTACAAAACATACTTTGGTGTGCCTTACCCTTTGCCAAAATTGGATATGGTCGCAATCCCTGATTTTTCGGCTGGGGCCATGGAGAATTATGGTTTAGTTACATACCGTGAGACAGCTTTGCTCTTTGATGATCAGCATTCTTCAGCTTCCATCAAGCAAAATGTTACAATAACCGTAGCACATGAATTGGCACACCAGTGGTTTGGTAATCTTGTAACCATGGAATGGTGGACACATTTATGGCTCAATGAGGGATTTGCAACATGGGTGAGCTATTTAGCTACTGAGAGCTTGTTTCCTGAGTGGAAAATATGGACTCAGTTTCTTGATGAATCTACTGAGGGTCTTAAGCTGGATGGTCTTGAAGAATCCCACCCCATCGAGGTGGAGATAAATCATGCTGCTGAGGTTGATGAAATATTTGATGCAATAAGTTATACAAAAGGTGCTTCTGTTATTAGGATGCTACAAAATTATCTTGGTGCTGAACCCTTTCAGAGGTCACTGGCTGCATATGTAAAGAAACATGCTTACTCAAATGCAAAGACAGAAGACTTATGGGCTGCCCTTGAAGAGGGATCTGGTGAACCTGTGAACAAGCTGATGAATTCGTGGACGCAGCAGAAAGGCTACCCAGTTGTTTCTGTCGAAGTCAAAGATCAAAAATTGAAGTTTGATCAGACACAATTCTTGTCAAGTGGTTCCCAAGGCGAAGGAGAATGGATTGTGCCAATAACATTATGCTGTGGCTCGTATGATTTATGCAAGAGCTTCCTACTCAAAACTAAGTCTGAAACTCTTGACATAAAGGAATTTCTAGATCAAGCTGGTTTTTACAGGGTGAAATATGATGAGAAACTTGCAGCTTCACTAAGAAATGCTATACAGAACAAACACTTGTCTGCAACGGACAGATTTGGCATTTTGGATGATTCATATGCCCTTTCTATGGCTCGTCAGCTGTCTTTTGCTTCGTTGTTTACCTTGTTGGCTGCTTACAAAGAGGAACTTGACTATACAGTCCTGTCAAATTTGATTTCTGCAGCATATGTGGCTGTAATGCAAACAGTAACCCAATCAAACAGAGCAGGCTATGACTCTCTTCTTAGAGTTTATAGAGAGAGTGATCAAAGTGAGGAGAAAAACCGCATTTTAGGTTCATTAGCATCCTGTCCAGATCCAGACATTATACTGGAAGTTCTCAACTTTTTGTTGACTTCAGAGGTCCGCAACCAGGATGCTATTTTTGGACTTGCTGTTTGTAGTGAAGGACGGGAAACAGCTTGGACTTGGCTGAAGGATAACTGGGAGAAAATCTCAAAGACCTGGGGTTCTGGATTTCTAATTACTCGCTTTGTCAGTGCAATTGTTTCACCGCTTGCTTCATTTGAGAAGGTTGAGGAAGTAGAGGAGTTCTTCAAAGCCCATCCTAACCCTGCCATAACTAGAACCTTGAAGCAGAGCATTGAGCGAGCACAGATTAACGCCAAGTGGGTTCAGAGTGTTCAGGGTGAGAAAGATCTTCCCAAGGTTTTGAAGGAGTTGGCTTCTAGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

767

Amino Acids

86.39

Weight (kDa)

5.17

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	15 - 201	4.2e-47	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	236 - 452	3.8e-88	Peptidase family M1 domain
ERAP1_C	PF11838	521 - 595	1e-15	ERAP1-like C-terminal domain
ERAP1_C	PF11838	591 - 740	8.6e-37	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1760
Acc36I	ACCTGC	2 cut(s)	463, 706
AccB7I	CCANNNNNTGG	1 cut(s)	966
AccI	GTMKAC	1 cut(s)	593
AciI	CCGC	6 cut(s)	132, 139, 159, 1888, 1969, 2117
AclWI	GGATC	2 cut(s)	1327, 1913
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	5 cut(s)	35, 704, 1348, 1553, 1771
AcuI	CTGAAG	3 cut(s)	867, 1944, 2057
AfaI	GTAC	3 cut(s)	364, 495, 743
AfiI	CCNNNNNNNGG	6 cut(s)	966, 1123, 1239, 1315, 1690, 1975
AflII	CTTAAG	1 cut(s)	1088
AgeI	ACCGGT	1 cut(s)	415
AjnI	CCWGG	3 cut(s)	425, 1974, 2066
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	937
Alw21I	GWGCWC	2 cut(s)	168, 2218
Alw26I	GTCTC	4 cut(s)	133, 275, 572, 845
AlwI	GGATC	2 cut(s)	1327, 1913
AlwNI	CAGNNNCTG	1 cut(s)	432
AoxI	GGCC	3 cut(s)	16, 606, 816
ApeKI	GCWGC	8 cut(s)	432, 1142, 1250, 1304, 1360, 1604, 1733, 1784
ApoI	RAATTY	5 cut(s)	35, 704, 1348, 1553, 1771
ArsI	GACNNNNNNTTYG	4 cut(s)	654, 686, 1983, 2015
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	2 cut(s)	350, 1233
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	816, 1966
AsuHPI	GGTGA	5 cut(s)	1021, 1337, 1594, 2106, 2264
AvaII	GGWCC	1 cut(s)	1966
BalI	TGGCCA	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	566, 1299
Bbv12I	GWGCWC	2 cut(s)	168, 2218
BbvCI	CCTCAGC	1 cut(s)	1146
BbvI	GCAGC	8 cut(s)	419, 1129, 1237, 1291, 1372, 1616, 1720, 1796
BccI	CCATC	9 cut(s)	119, 235, 248, 505, 647, 899, 1091, 1127, 2175
BceAI	ACGGC	2 cut(s)	26, 170
BciT130I	CCWGG	3 cut(s)	427, 1976, 2068
BclI	TGATCA	3 cut(s)	871, 1417, 1867
BcoDI	GTCTC	4 cut(s)	133, 275, 572, 845
BfaI	CTAG	5 cut(s)	203, 1559, 2187, 2292, 2302
BfmI	CTRYAG	2 cut(s)	355, 1782
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	1088
BfuAI	ACCTGC	2 cut(s)	463, 706
BglII	AGATCT	1 cut(s)	2260
BisI	GCNGC	9 cut(s)	159, 433, 1143, 1251, 1305, 1361, 1605, 1734, 1785
BlsI	GCNGC	9 cut(s)	160, 434, 1144, 1252, 1306, 1362, 1606, 1735, 1786
Bme1390I	CCNGG	3 cut(s)	427, 1976, 2068
Bme18I	GGWCC	1 cut(s)	1966
BmgT120I	GGNCC	2 cut(s)	816, 1966
BmiI	GGNNCC	3 cut(s)	103, 817, 1444
BmrFI	CCNGG	3 cut(s)	427, 1976, 2068
BmrI	ACTGGG	2 cut(s)	1370, 2056
BmsI	GCATC	5 cut(s)	412, 1156, 1194, 1916, 1969
BmuI	ACTGGG	2 cut(s)	1370, 2056
BpiI	GAAGAC	2 cut(s)	566, 1299
BplI	GAGNNNNNCTC	2 cut(s)	2042, 2074
Bpu10I	CCTNAGC	1 cut(s)	1146
BsaJI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2067, 2268
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	6 cut(s)	966, 1123, 1239, 1315, 1690, 1975
Bse118I	RCCGGY	2 cut(s)	415, 526
Bse1I	ACTGG	5 cut(s)	937, 1251, 1376, 1938, 2051
BseBI	CCWGG	3 cut(s)	427, 1976, 2068
BseDI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2067, 2268
BseGI	GGATG	7 cut(s)	454, 1102, 1209, 1675, 1907, 1984, 2167
BseLI	CCNNNNNNNGG	6 cut(s)	966, 1123, 1239, 1315, 1690, 1975
BseMII	CTCAG	6 cut(s)	82, 1017, 1032, 1071, 1073, 1137
BseNI	ACTGG	5 cut(s)	937, 1251, 1376, 1938, 2051
BseRI	GAGGAG	3 cut(s)	293, 1892, 2165
BseXI	GCAGC	8 cut(s)	419, 1129, 1237, 1291, 1372, 1616, 1720, 1796
BseYI	CCCAGC	2 cut(s)	298, 812
BshFI	GGCC	3 cut(s)	18, 608, 818
BshTI	ACCGGT	1 cut(s)	415
BsiHKAI	GWGCWC	2 cut(s)	168, 2218
BsiSI	CCGG	2 cut(s)	416, 527
BslI	CCNNNNNNNGG	6 cut(s)	966, 1123, 1239, 1315, 1690, 1975
BsmAI	GTCTC	4 cut(s)	133, 275, 572, 845
BsmBI	CGTCTC	2 cut(s)	133, 275
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	18, 608, 818
Bsp1286I	GDGCHC	2 cut(s)	168, 2218
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
Bsp19I	CCATGG	2 cut(s)	819, 960
BspACI	CCGC	6 cut(s)	132, 139, 159, 1888, 1969, 2117
BspANI	GGCC	3 cut(s)	18, 608, 818
BspCNI	CTCAG	6 cut(s)	81, 1018, 1033, 1072, 1072, 1138
BspLI	GGNNCC	3 cut(s)	103, 817, 1444
BspMAI	CTGCAG	1 cut(s)	1786
BspMI	ACCTGC	2 cut(s)	463, 706
BspPI	GGATC	2 cut(s)	1327, 1913
BspTI	CTTAAG	1 cut(s)	1088
BsrFI	RCCGGY	2 cut(s)	415, 526
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	5 cut(s)	937, 1251, 1376, 1938, 2051
BssAI	RCCGGY	2 cut(s)	415, 526
BssECI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2067, 2268
BssMI	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
BssT1I	CCWWGG	6 cut(s)	213, 697, 819, 960, 1447, 2268
Bst2UI	CCWGG	3 cut(s)	427, 1976, 2068
Bst4CI	ACNGT	7 cut(s)	9, 408, 565, 848, 916, 1762, 1810
Bst6I	CTCTTC	3 cut(s)	214, 1308, 1848
BstAFI	CTTAAG	1 cut(s)	1088
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	5 cut(s)	88, 460, 1831, 2121, 2214
BstDEI	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1613, 1847
BstDSI	CCRYGG	2 cut(s)	819, 960
BstENI	CCTNNNNNAGG	2 cut(s)	1237, 1313
BstF5I	GGATG	7 cut(s)	454, 1102, 1209, 1675, 1907, 1984, 2167
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	9 cut(s)	643, 874, 1322, 1402, 1420, 1564, 1870, 1921, 2263
BstMAI	GTCTC	4 cut(s)	133, 275, 572, 845
BstMBI	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 1793
BstNI	CCWGG	3 cut(s)	427, 1976, 2068
BstNSI	RCATGY	2 cut(s)	526, 1271
BstSCI	CCNGG	3 cut(s)	425, 1974, 2066
BstSFI	CTRYAG	2 cut(s)	355, 1782
BstV1I	GCAGC	8 cut(s)	419, 1129, 1237, 1291, 1372, 1616, 1720, 1796
BstV2I	GAAGAC	2 cut(s)	566, 1299
BstX2I	RGATCY	3 cut(s)	1319, 1918, 2260
BstXI	CCANNNNNNTGG	2 cut(s)	944, 1126
BstYI	RGATCY	3 cut(s)	1319, 1918, 2260
BsuRI	GGCC	3 cut(s)	18, 608, 818
BtgI	CCRYGG	2 cut(s)	819, 960
BtsCI	GGATG	7 cut(s)	454, 1102, 1209, 1675, 1907, 1984, 2167
BtsIMutI	CAGTG	3 cut(s)	944, 1244, 2107
BveI	ACCTGC	2 cut(s)	463, 706
Cac8I	GCNNGC	5 cut(s)	88, 460, 1831, 2121, 2214
CaiI	CAGNNNCTG	1 cut(s)	432
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	2 cut(s)	415, 526
Cfr13I	GGNCC	2 cut(s)	816, 1966
CseI	GACGC	1 cut(s)	1366
Csp6I	GTAC	3 cut(s)	363, 494, 742
CspAI	ACCGGT	1 cut(s)	415
CviAII	CATG	8 cut(s)	394, 523, 820, 923, 961, 1005, 1139, 1268
CviQI	GTAC	3 cut(s)	363, 494, 742
DdeI	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1613, 1847
DpnI	GATC	9 cut(s)	642, 873, 1321, 1401, 1419, 1563, 1869, 1920, 2262
DpnII	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
DrdI	GACNNNNNNGTC	1 cut(s)	1760
DseDI	GACNNNNNNGTC	1 cut(s)	1760
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	214, 1308, 1848
EarI	CTCTTC	3 cut(s)	214, 1308, 1848
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	6 cut(s)	213, 697, 819, 960, 1447, 2268
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	1966
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	3 cut(s)	867, 1944, 2057
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	2 cut(s)	1237, 1313
EcoRI	GAATTC	1 cut(s)	1348
EcoRII	CCWGG	3 cut(s)	425, 1974, 2066
EcoT14I	CCWWGG	6 cut(s)	213, 697, 819, 960, 1447, 2268
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	6 cut(s)	213, 697, 819, 960, 1447, 2268
Esp3I	CGTCTC	2 cut(s)	133, 275
FaeI	CATG	8 cut(s)	397, 526, 823, 926, 964, 1008, 1142, 1271
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 1734, 1766
FatI	CATG	8 cut(s)	393, 522, 819, 922, 960, 1004, 1138, 1267
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	4 cut(s)	367, 1255, 1678, 1789
FbaI	TGATCA	3 cut(s)	871, 1417, 1867
FblI	GTMKAC	1 cut(s)	593
Fnu4HI	GCNGC	9 cut(s)	159, 433, 1143, 1251, 1305, 1361, 1605, 1734, 1785
FokI	GGATG	7 cut(s)	461, 1109, 1216, 1682, 1894, 1991, 2154
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	9 cut(s)	159, 433, 1143, 1251, 1305, 1361, 1605, 1734, 1785
FspBI	CTAG	5 cut(s)	203, 1559, 2187, 2292, 2302
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	9 cut(s)	159, 433, 1143, 1251, 1305, 1361, 1605, 1734, 1785
GsaI	CCCAGC	2 cut(s)	302, 816
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	3 cut(s)	18, 608, 818
HapII	CCGG	2 cut(s)	416, 527
HgaI	GACGC	1 cut(s)	1366
HhaI	GCGC	1 cut(s)	432
Hin1II	CATG	8 cut(s)	397, 526, 823, 926, 964, 1008, 1142, 1271
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	3 cut(s)	175, 238, 1956
HindII	GTYRAC	3 cut(s)	175, 238, 1956
HinfI	GANTC	8 cut(s)	206, 286, 351, 1057, 1073, 1109, 1673, 1838
HpaII	CCGG	2 cut(s)	416, 527
HphI	GGTGA	5 cut(s)	1021, 1337, 1594, 2106, 2264
Hpy166II	GTNNAC	9 cut(s)	175, 238, 594, 972, 1328, 1336, 1356, 1722, 1956
Hpy188I	TCNGA	8 cut(s)	71, 502, 652, 1239, 1422, 1534, 1963, 2241
Hpy8I	GTNNAC	9 cut(s)	175, 238, 594, 972, 1328, 1336, 1356, 1722, 1956
Hpy99I	CGWCG	4 cut(s)	62, 86, 101, 110
HpyAV	CCTTC	6 cut(s)	340, 1448, 2003, 2032, 2128, 2272
HpyCH4III	ACNGT	7 cut(s)	9, 408, 565, 848, 916, 1762, 1810
HpyCH4IV	ACGT	2 cut(s)	60, 633
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 1793
HpyF3I	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1613, 1847
HpySE526I	ACGT	2 cut(s)	60, 633
Hsp92II	CATG	8 cut(s)	397, 526, 823, 926, 964, 1008, 1142, 1271
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	3 cut(s)	871, 1417, 1867
Kzo9I	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
LmnI	GCTCC	1 cut(s)	107
Lsp1109I	GCAGC	8 cut(s)	419, 1129, 1237, 1291, 1372, 1616, 1720, 1796
LweI	GCATC	5 cut(s)	412, 1156, 1194, 1916, 1969
MaeI	CTAG	5 cut(s)	203, 1559, 2187, 2292, 2302
MaeII	ACGT	2 cut(s)	60, 633
MaeIII	GTNAC	7 cut(s)	3, 400, 838, 904, 955, 1242, 1810
MalI	GATC	9 cut(s)	642, 873, 1321, 1401, 1419, 1563, 1869, 1920, 2262
MboI	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
MfeI	CAATTG	1 cut(s)	2106
MflI	RGATCY	3 cut(s)	1319, 1918, 2260
MhlI	GDGCHC	2 cut(s)	168, 2218
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	3 cut(s)	200, 1051, 1832
MmeI	TCCRAC	1 cut(s)	543
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	2 cut(s)	350, 1233
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	2 cut(s)	1089, 2223
MslI	CAYNNNNRTG	3 cut(s)	937, 979, 1124
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	1702
MspCI	CTTAAG	1 cut(s)	1088
MspI	CCGG	2 cut(s)	416, 527
MspR9I	CCNGG	3 cut(s)	427, 1976, 2068
MunI	CAATTG	1 cut(s)	2106
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	3 cut(s)	427, 1976, 2068
MwoI	GCNNNNNNNGC	2 cut(s)	464, 1793
NcoI	CCATGG	2 cut(s)	819, 960
NdeI	CATATG	4 cut(s)	367, 1255, 1678, 1789
NdeII	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
NlaIII	CATG	8 cut(s)	397, 526, 823, 926, 964, 1008, 1142, 1271
NlaIV	GGNNCC	3 cut(s)	103, 817, 1444
NmeAIII	GCCGAG	2 cut(s)	4, 187
NmuCI	GTSAC	2 cut(s)	3, 1242
NspI	RCATGY	2 cut(s)	526, 1271
OliI	CACNNNNGTG	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	877
PdmI	GAANNNNTTC	2 cut(s)	350, 1233
PfeI	GAWTC	5 cut(s)	286, 351, 1073, 1109, 1673
PflFI	GACNNNGTC	2 cut(s)	80, 125
PflMI	CCANNNNNTGG	1 cut(s)	966
PinAI	ACCGGT	1 cut(s)	415
PkrI	GCNGC	9 cut(s)	160, 434, 1144, 1252, 1306, 1362, 1606, 1735, 1786
PleI	GAGTC	3 cut(s)	200, 1051, 1832
PpsI	GAGTC	3 cut(s)	200, 1051, 1832
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	425, 1974, 2066
PspFI	CCCAGC	2 cut(s)	298, 812
PspGI	CCWGG	3 cut(s)	425, 1974, 2066
PspN4I	GGNNCC	3 cut(s)	103, 817, 1444
PspPI	GGNCC	2 cut(s)	816, 1966
PstI	CTGCAG	1 cut(s)	1786
PstNI	CAGNNNCTG	1 cut(s)	432
PsuI	RGATCY	3 cut(s)	1319, 1918, 2260
PsyI	GACNNNGTC	2 cut(s)	80, 125
PvuII	CAGCTG	1 cut(s)	1702
RsaI	GTAC	3 cut(s)	364, 495, 743
RsaNI	GTAC	3 cut(s)	363, 494, 742
RseI	CAYNNNNRTG	3 cut(s)	937, 979, 1124
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	1089, 2223
SatI	GCNGC	9 cut(s)	159, 433, 1143, 1251, 1305, 1361, 1605, 1734, 1785
Sau3AI	GATC	9 cut(s)	640, 871, 1319, 1399, 1417, 1561, 1867, 1918, 2260
Sau96I	GGNCC	2 cut(s)	816, 1966
SchI	GAGTC	3 cut(s)	200, 1051, 1832
ScrFI	CCNGG	3 cut(s)	427, 1976, 2068
SduI	GDGCHC	2 cut(s)	168, 2218
SfaNI	GCATC	5 cut(s)	412, 1156, 1194, 1916, 1969
SfcI	CTRYAG	2 cut(s)	355, 1782
SinI	GGWCC	1 cut(s)	1966
SmiMI	CAYNNNNRTG	3 cut(s)	937, 979, 1124
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
SsiI	CCGC	6 cut(s)	132, 139, 159, 1888, 1969, 2117
SspI	AATATT	1 cut(s)	1161
SspMI	CTAG	5 cut(s)	203, 1559, 2187, 2292, 2302
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	425, 1974, 2066
StyI	CCWWGG	6 cut(s)	213, 697, 819, 960, 1447, 2268
TaaI	ACNGT	7 cut(s)	9, 408, 565, 848, 916, 1762, 1810
TaiI	ACGT	2 cut(s)	63, 636
TaqI	TCGA	6 cut(s)	114, 120, 230, 627, 1122, 1389
TatI	WGTACW	2 cut(s)	362, 741
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	5 cut(s)	286, 351, 1073, 1109, 1673
Tru1I	TTAA	2 cut(s)	1089, 2223
Tru9I	TTAA	2 cut(s)	1089, 2223
TscAI	CASTG	3 cut(s)	944, 1251, 2107
TseFI	GTSAC	2 cut(s)	3, 1242
TseI	GCWGC	8 cut(s)	432, 1142, 1250, 1304, 1360, 1604, 1733, 1784
Tsp45I	GTSAC	2 cut(s)	3, 1242
TspGWI	ACGGA	4 cut(s)	94, 160, 429, 1664
TspRI	CASTG	3 cut(s)	944, 1251, 2107
Tth111I	GACNNNGTC	2 cut(s)	80, 125
Van91I	CCANNNNNTGG	1 cut(s)	966
Vha464I	CTTAAG	1 cut(s)	1088
VpaK11BI	GGWCC	1 cut(s)	1966
XagI	CCTNNNNNAGG	2 cut(s)	1237, 1313
XapI	RAATTY	5 cut(s)	35, 704, 1348, 1553, 1771
XbaI	TCTAGA	1 cut(s)	1558
XceI	RCATGY	2 cut(s)	526, 1271
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	2 cut(s)	350, 1233
XspI	CTAG	5 cut(s)	203, 1559, 2187, 2292, 2302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.