Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

27046558 .. 27047865

Gene Structure 1308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34263.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAACGCTCTTGAACTTGATGTTCATCAAGTTTGGTTCACCAACTCTCAAGGCCAAAAGTACCACCCCTGCGATGTTGTTTTAGATGGAGATGATGAATTTCTTGTTTTGGTCTTTAATAAAGCACTTGGTACTAGTGAGGGAGTCCTGGGGGTTGAGTTTTCTGCAGTCCTTAATGCGCACTTGAAGGGGTTATATAAATGTACTTATTTGGATGGAGGAGAGAAAAAGAATATGGCTGTTACTCAATTTGAAGCTGTGGATGCGAGGCGATGCTTTCCATGTTGGGATGAGCCTGCTCTCAAGGCCACCTTCAAGATAGCATTAGATGTACCATCTGAGCTGACAGCTTTGTCCAATATGCCAGTTGTTAATGAACAGCTTGATGGAGATGTTAAGACTGTTTATTTTGAGGAATCTCCAATCATGTCAACTTATTTGGTGGCTGTTGTTGTTGGCCTGTTTGATTATATTGAAGATACAACATCTGATGGGGTAAAGGTTCGTGCATATTGCCCAGTTGGGAACAGTGATAATGGGGAGTTTGCTTTAAATCTTGCCGTTAAGACCCTTGATCTTTTCTCCAATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

198

Amino Acids

21.66

Weight (kDa)

4.39

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	1 - 147	4.4e-41	Peptidase M1 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
Acc16I	TGCGCA	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	4 cut(s)	62, 133, 205, 333
AgsI	TTSAA	5 cut(s)	14, 187, 254, 316, 476
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	257, 343, 350, 382
AluI	AGCT	4 cut(s)	257, 343, 350, 382
AoxI	GGCC	3 cut(s)	52, 306, 457
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	31
BccI	CCATC	5 cut(s)	80, 209, 343, 380, 485
BceAI	ACGGC	1 cut(s)	545
BciT130I	CCWGG	1 cut(s)	149
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	1 cut(s)	135
BfmI	CTRYAG	1 cut(s)	165
Bme1390I	CCNGG	1 cut(s)	149
BmrFI	CCNGG	1 cut(s)	149
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	253, 263
BmuI	ACTGGG	1 cut(s)	512
BpuEI	CTTGAG	2 cut(s)	33, 287
BsaBI	GATNNNNATC	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	365, 518
Bse8I	GATNNNNATC	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	3 cut(s)	220, 268, 295
BseJI	GATNNNNATC	1 cut(s)	24
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	365, 518
BseRI	GAGGAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	54, 308, 459
BsnI	GGCC	3 cut(s)	54, 308, 459
Bsp143I	GATC	1 cut(s)	574
BspANI	GGCC	3 cut(s)	54, 308, 459
BspCNI	CTCAG	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	169
BsrI	ACTGG	2 cut(s)	365, 518
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	2 cut(s)	403, 530
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	339
BstF5I	GGATG	3 cut(s)	220, 268, 295
BstHHI	GCGC	1 cut(s)	181
BstKTI	GATC	1 cut(s)	577
BstMBI	GATC	1 cut(s)	574
BstMWI	GCNNNNNNNGC	2 cut(s)	263, 305
BstNI	CCWGG	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	147
BstSFI	CTRYAG	1 cut(s)	165
BsuRI	GGCC	3 cut(s)	54, 308, 459
BtgZI	GCGATG	2 cut(s)	87, 286
BtsCI	GGATG	3 cut(s)	220, 268, 295
BtsIMutI	CAGTG	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	297
CfoI	GCGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	61, 132, 204, 332
CviAII	CATG	2 cut(s)	282, 427
CviQI	GTAC	4 cut(s)	61, 132, 204, 332
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	1 cut(s)	576
DpnII	GATC	1 cut(s)	574
DraI	TTTAAA	1 cut(s)	552
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	147
FaeI	CATG	2 cut(s)	285, 430
FaiI	YATR	8 cut(s)	196, 198, 236, 283, 362, 428, 471, 511
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	2 cut(s)	281, 426
FokI	GGATG	3 cut(s)	227, 275, 302
FspAI	RTGCGCAY	1 cut(s)	180
FspBI	CTAG	1 cut(s)	135
FspI	TGCGCA	1 cut(s)	180
GlaI	GCGC	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	54, 308, 459
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	2 cut(s)	285, 430
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	144, 416
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	39, 432
Hpy188I	TCNGA	2 cut(s)	340, 490
Hpy188III	TCNNGA	3 cut(s)	11, 316, 591
Hpy8I	GTNNAC	2 cut(s)	39, 432
HpyAV	CCTTC	2 cut(s)	181, 322
HpyCH4III	ACNGT	2 cut(s)	403, 530
HpyCH4V	TGCA	2 cut(s)	167, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	263, 305
HpyF3I	CTNAG	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	285, 430
HspAI	GCGC	1 cut(s)	179
Kzo9I	GATC	1 cut(s)	574
LpnPI	CCDG	7 cut(s)	82, 134, 161, 309, 378, 473, 531
LweI	GCATC	2 cut(s)	253, 263
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	576
MboI	GATC	1 cut(s)	574
MboII	GAAGA	1 cut(s)	488
MluCI	AATT	3 cut(s)	98, 248, 586
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	4 cut(s)	133, 212, 261, 406
MseI	TTAA	6 cut(s)	117, 174, 372, 396, 551, 564
MspR9I	CCNGG	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	263, 305
NdeII	GATC	1 cut(s)	574
NlaIII	CATG	2 cut(s)	285, 430
NsbI	TGCGCA	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	416
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
Psp6I	CCWGG	1 cut(s)	147
PspGI	CCWGG	1 cut(s)	147
PstI	CTGCAG	1 cut(s)	169
RsaI	GTAC	4 cut(s)	62, 133, 205, 333
RsaNI	GTAC	4 cut(s)	61, 132, 204, 332
SaqAI	TTAA	6 cut(s)	117, 174, 372, 396, 551, 564
Sau3AI	GATC	1 cut(s)	574
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	1 cut(s)	149
SetI	ASST	6 cut(s)	259, 314, 345, 352, 384, 504
SfaNI	GCATC	2 cut(s)	253, 263
SfcI	CTRYAG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	48, 302
SmoI	CTYRAG	2 cut(s)	48, 302
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	3 cut(s)	98, 248, 586
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	403, 530
TasI	AATT	3 cut(s)	98, 248, 586
TatI	WGTACW	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	6 cut(s)	117, 174, 372, 396, 551, 564
Tru9I	TTAA	6 cut(s)	117, 174, 372, 396, 551, 564
TscAI	CASTG	1 cut(s)	535
TspDTI	ATGAA	4 cut(s)	14, 17, 111, 390
TspRI	CASTG	1 cut(s)	535
XapI	RAATTY	1 cut(s)	98
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.