Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

65062464 .. 65071688

Gene Structure 9225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG440000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGGAACAGAAGCAAGGCATAGAGCAATTTAAAGGCCAAGCAAGGTTACCGAATTTTGCAATCCCGAAACGCTATGATCTTCATCTCAAACTTGATCTCTCTGCCTGCACCTTCTCCGGCACCGTGCAGATTAACGTTAGCATCGTTGAAGAGACCAAGTTTCTTGTCTTGAACGCTCTTGAACTTGATGTTCATCAAGTTTGGTTCACCAACTCTCACGGCCAAAAGTACCACCCCTGCGATGTTGTTTTGGATGGAGATGATGAAGTTCTTGTTTTGGTATTTGATAAAGCACTTGGTATTGGTGAGGGAGTCTTGGCGGTTGACTTTTCTGCAGTCCTTAATGCGCACTTGGAGGGGTTCTATAAATGTGCTTATATGGATGGGGAAGAGAAAAAGAATATGGCTGTTACTCAATTCGAAGCTGTGGATGCGAGGAGGTGCTTTCCATGTTGGGATGAACCTGCTCTCAAGGCTAGATTCAAGATAGCATTAGATGTACCATCAGAGCTGACAGCTTTATCCAATATGCCTATTATTAATGAGAAGTGTGATGGAGATATTAAGACTGTGTCTTTTGAGGAATCTCCAATCATGTCAACTTATTTGGTGGCTGTTGTTGTTGGCCTATTTGATCATATTGAAGATACAACATCTGATGGGGTAAAGGTTCGTGCATATTGCCCTGTTGGGAAGAGTGATAAAGGGGAATTTGCGTTAAATGTTGCTGTTAAGACCCTTGATCTTTTCTCCAAATACTTCTCAACGCCTTACTCACTCCCCAAACTTGATATGGTTGCGGTTCCTGAATTTTCCGGTGGGGCCATGGAGAATTATGGTTTGATCACATACCGTGAAACTGAACTGCTTTTTGATCCTTTGCATACCACAGCAGCAAGAAAGCAAAGAATGGCAATTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGGTAACAATGGAATGGTGGACTGATTTATGGCTTAACGAGGGTTTTGCAACATGGATAAGTTATATGGCCACTGATATTTTGTTTCCTGAGTGGAAAGTTTGGTCTCAATTTCTTCAATATACTACTGGTGGCCTAATTATGGATGCCCTGGAACAATCACATCCAATTCAGGTAGAGGTACACCACGCACGTTCAGTTCTTGAAATATTCGATGCTATCAGTTATGAAAAGGGATCTGCTGTTATACGAATGCTGCAGGCTTATCTTGGTGATGATATATTCCAGAAATCGTTAAGTTCCTACATAAAAAGATATTCTGAAAAAAATGCAAAGACAGAAGATTTATGGAGTGTTCTGTCGGAGGAATCTGGTCTCAAAATCAGTGAAATGATGGATGATTGGACTAAGAAACAAGGATATCCTGTGATCTCTGTAACAGCAAAGGATCATATTTTGGAATTTGAGCAGACACAGTTTCTGTCAGCAGGTTTGCTTAGTGAAGGGAAATGGATTGTTCCAGTAACTATTTCACTCGGTTCATATGAGAGACGCAAGAATTTCCTTTTGGAAACAAAGTCCAGTGAAGTGGACATATCAGATCTTGTTGACACTTCTGATACTAATTTAAAGAGTAAAGAGACATGTGATGAACAACTGTGGGTCAAGGTTAATATCGAGCAGAGTGGTTTTTATAGGGTAAAATATGAAGATAAGCTAGCAGCTCGACTTAGGAAGGCTATTGAGCATAATAGCTTGGAAGCAACAGACAAATTTGGTATTCTGGATGATGCATACGCCCTTTGCGAAGCTTGTGAACAGTCACTATCATCTTTGCTTTCCTTGATGGATGTATACAGAAAAGAAGCTGATTATATTGTCTTATCAAAACTTATAGACGTATGTTATAACATTGTTAAAGTATCAAGCGAGGCCATCCCTGATTCAGTGAATGAGTTGAAGCAATTTTGCATCAATCTCCTCATGTTTCCATCAGAAAAATTAGGCTGGGAACCAGTACCTGGAGAGAGTCACTTCAGTACACTTTTGAGAGCAGAAGTCTTGCAGGCCTTGGTTACATTTGGCCATGATAAAACTCAGAATGAAGCATTAGATCGATTTCAGAAATTATTGAATGATAGAAACACTCCGCTTCTTACTGCAGATACAAGAGCGGCTGCTTACATTGCAATGATGAGGAATGCTGGCAGCTCACACAAGGAAGGCCTTGAGTCACTATTAAATGTTTACAGAGAAGCTGGTACAGTGCAAGAGAAGGAACGAATTCTACGTTATTTTGCATCTTCTCCAGACCCAGATACAGTTGTTGATGTTTTGAACTTTTTCTTATCTGATGAGGTTCGAGATCAGGACATTATATTTGCACTCCCTGGTATAAGCTTAGAATGCCGTGAAACAGCATGGAAATGGACCAAGGAGAACTGGGACCTGATCCTCACCAAGTATGGTGCTGGATTGCTACTCACCCGTTTCGTAAGAGACGTTGTAACACCGTTTTGTAGCAATGAAAAGGCTGATGAGGTTGAAGAATTTTTCGCAAGCCGGGTGCATCCTTCCATTGCTATGACTCTGAAGCAAAGCATTGAGCACGTCCGAATCAAGGCGAGGTGGGTTCAAAGCGCAAGGCAGGAGCAATCTCTTCAAGAACTAGTCAAAGAGTTGGCAGGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

884

Amino Acids

100.25

Weight (kDa)

5.01

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	22 - 203	1.2e-48	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	238 - 454	9.4e-84	Peptidase family M1 domain
ERAP1_C	PF11838	540 - 858	4.5e-74	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1866
Acc16I	TGCGCA	1 cut(s)	348
Acc36I	ACCTGC	2 cut(s)	472, 1436
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	1979
AccBSI	CCGCTC	1 cut(s)	2132
AccI	GTMKAC	1 cut(s)	1812
AciI	CCGC	4 cut(s)	320, 800, 2108, 2132
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	4 cut(s)	869, 1201, 1413, 2404
AcoI	YGGCCR	3 cut(s)	220, 1026, 2041
AcsI	RAATTY	8 cut(s)	52, 710, 809, 1418, 1516, 1730, 2241, 2507
AcuI	CTGAAG	2 cut(s)	1978, 2570
AfaI	GTAC	6 cut(s)	230, 501, 1140, 1977, 1999, 2221
AfiI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2578
AflIII	ACRYGT	1 cut(s)	1601
AhlI	ACTAGT	1 cut(s)	2626
AjiI	CACGTC	1 cut(s)	2569
AjnI	CCWGG	3 cut(s)	1107, 1978, 2347
AjuI	GAANNNNNNNTTGG	2 cut(s)	1508, 1540
AleI	CACNNNNGTG	1 cut(s)	943
Alw21I	GWGCWC	1 cut(s)	2568
Alw26I	GTCTC	6 cut(s)	146, 1068, 1337, 1501, 1592, 2451
AlwI	GGATC	4 cut(s)	869, 1201, 1413, 2404
AlwNI	CAGNNNCTG	2 cut(s)	1438, 1979
ApeKI	GCWGC	5 cut(s)	893, 1213, 1679, 2135, 2166
ApoI	RAATTY	8 cut(s)	52, 710, 809, 1418, 1516, 1730, 2241, 2507
ArsI	GACNNNNNNTTYG	2 cut(s)	2321, 2353
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	2 cut(s)	2241, 2300
AspLEI	GCGC	2 cut(s)	349, 2600
AspS9I	GGNCC	3 cut(s)	822, 2388, 2404
AsuC2I	CCSGG	1 cut(s)	2522
AsuHPI	GGTGA	5 cut(s)	199, 317, 1241, 2407, 2434
AsuII	TTCGAA	1 cut(s)	420
AsuNHI	GCTAGC	1 cut(s)	1675
AvaII	GGWCC	2 cut(s)	2388, 2404
BaeI	ACNNNNGTAYC	2 cut(s)	2268, 2301
BalI	TGGCCA	2 cut(s)	1028, 2043
BanI	GGYRCC	1 cut(s)	119
Bbv12I	GWGCWC	1 cut(s)	2568
BbvI	GCAGC	5 cut(s)	905, 1200, 1691, 2122, 2178
BccI	CCATC	9 cut(s)	248, 377, 511, 548, 653, 1345, 1798, 1901, 1957
BceAI	ACGGC	2 cut(s)	235, 2352
BcgI	CGANNNNNNTGC	2 cut(s)	986, 1020
BciT130I	CCWGG	3 cut(s)	1109, 1980, 2349
BclI	TGATCA	2 cut(s)	634, 843
BcnI	CCSGG	1 cut(s)	2522
BcoDI	GTCTC	6 cut(s)	146, 1068, 1337, 1501, 1592, 2451
BcuI	ACTAGT	1 cut(s)	2626
BfaI	CTAG	3 cut(s)	477, 1676, 2627
BfmI	CTRYAG	3 cut(s)	333, 1214, 2118
BfuAI	ACCTGC	2 cut(s)	472, 1436
BglII	AGATCT	1 cut(s)	1558
BisI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
BlsI	GCNGC	6 cut(s)	895, 1215, 1681, 2134, 2137, 2168
Bme1390I	CCNGG	4 cut(s)	1109, 1980, 2349, 2522
Bme18I	GGWCC	2 cut(s)	2388, 2404
BmgBI	CACGTC	1 cut(s)	2569
BmgT120I	GGNCC	3 cut(s)	822, 2388, 2404
BmiI	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
BmrFI	CCNGG	4 cut(s)	1109, 1980, 2349, 2522
BmrI	ACTGGG	1 cut(s)	2410
BmsI	GCATC	8 cut(s)	150, 421, 1093, 1162, 1738, 1938, 2267, 2536
BmtI	GCTAGC	1 cut(s)	1679
BmuI	ACTGGG	1 cut(s)	2410
BpmI	CTGGAG	2 cut(s)	2001, 2250
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	455, 2207
BpuMI	CCSGG	1 cut(s)	2522
Bsa29I	ATCGAT	1 cut(s)	2074
BsaBI	GATNNNNATC	2 cut(s)	81, 192
BsaI	GGTCTC	3 cut(s)	146, 1068, 1337
BsaJI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2391
BsaWI	WCCGGW	1 cut(s)	815
Bsc4I	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2578
Bse1I	ACTGG	5 cut(s)	1090, 1478, 1539, 1973, 2405
Bse3DI	GCAATG	4 cut(s)	2142, 2154, 2488, 2535
Bse8I	GATNNNNATC	2 cut(s)	81, 192
BseBI	CCWGG	3 cut(s)	1109, 1980, 2349
BseCI	ATCGAT	1 cut(s)	2074
BseDI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2391
BseJI	GATNNNNATC	2 cut(s)	81, 192
BseLI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2578
BseMI	GCAATG	4 cut(s)	2142, 2154, 2488, 2535
BseMII	CTCAG	2 cut(s)	1038, 2069
BseNI	ACTGG	5 cut(s)	1090, 1478, 1539, 1973, 2405
BseRI	GAGGAG	2 cut(s)	451, 1928
BseXI	GCAGC	5 cut(s)	905, 1200, 1691, 2122, 2178
BseYI	CCCAGC	1 cut(s)	1965
BsgI	GTGCAG	2 cut(s)	91, 146
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	2074
BsiHKAI	GWGCWC	1 cut(s)	2568
BsiSI	CCGG	3 cut(s)	117, 816, 2521
BslFI	GGGAC	1 cut(s)	2417
BslI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2578
BsmAI	GTCTC	6 cut(s)	146, 1068, 1337, 1501, 1592, 2451
BsmBI	CGTCTC	2 cut(s)	1501, 2451
BsmFI	GGGAC	1 cut(s)	2417
BsmI	GAATGC	3 cut(s)	1215, 2164, 2369
Bso31I	GGTCTC	3 cut(s)	146, 1068, 1337
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	2568
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	4 cut(s)	320, 800, 2108, 2132
BspCNI	CTCAG	2 cut(s)	1039, 2068
BspDI	ATCGAT	1 cut(s)	2074
BspLI	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
BspMAI	CTGCAG	3 cut(s)	337, 1218, 2122
BspMI	ACCTGC	2 cut(s)	472, 1436
BspOI	GCTAGC	1 cut(s)	1679
BspPI	GGATC	4 cut(s)	869, 1201, 1413, 2404
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	3 cut(s)	146, 1068, 1337
BsrBI	CCGCTC	1 cut(s)	2132
BsrDI	GCAATG	4 cut(s)	2142, 2154, 2488, 2535
BsrI	ACTGG	5 cut(s)	1090, 1478, 1539, 1973, 2405
BssECI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2391
BssNAI	GTATAC	1 cut(s)	1813
BssT1I	CCWWGG	3 cut(s)	825, 2028, 2391
Bst1107I	GTATAC	1 cut(s)	1813
Bst2UI	CCWGG	3 cut(s)	1109, 1980, 2349
Bst4CI	ACNGT	9 cut(s)	124, 571, 854, 1434, 1617, 1779, 2224, 2281, 2472
Bst6I	CTCTTC	4 cut(s)	144, 384, 689, 2622
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	7 cut(s)	106, 1218, 1677, 2025, 2164, 2518, 2644
BstDEI	CTNAG	6 cut(s)	1047, 1365, 1454, 1688, 2055, 2359
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	349, 2600
BstMAI	GTCTC	6 cut(s)	146, 1068, 1337, 1501, 1592, 2451
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
BstNI	CCWGG	3 cut(s)	1109, 1980, 2349
BstNSI	RCATGY	1 cut(s)	1605
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	4 cut(s)	1107, 1978, 2347, 2520
BstSFI	CTRYAG	3 cut(s)	333, 1214, 2118
BstV1I	GCAGC	5 cut(s)	905, 1200, 1691, 2122, 2178
BstX2I	RGATCY	2 cut(s)	1193, 1558
BstXI	CCANNNNNNTGG	1 cut(s)	1546
BstYI	RGATCY	2 cut(s)	1193, 1558
BstZ17I	GTATAC	1 cut(s)	1813
Bsu15I	ATCGAT	1 cut(s)	2074
BsuTUI	ATCGAT	1 cut(s)	2074
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	255
BtrI	CACGTC	1 cut(s)	2569
BtsIMutI	CAGTG	6 cut(s)	950, 1029, 1348, 1546, 1911, 2229
BveI	ACCTGC	2 cut(s)	472, 1436
Cac8I	GCNNGC	7 cut(s)	106, 1218, 1677, 2025, 2164, 2518, 2644
CaiI	CAGNNNCTG	2 cut(s)	1438, 1979
CfoI	GCGC	2 cut(s)	349, 2600
Cfr13I	GGNCC	3 cut(s)	822, 2388, 2404
ClaI	ATCGAT	1 cut(s)	2074
CseI	GACGC	1 cut(s)	1518
Csp6I	GTAC	6 cut(s)	229, 500, 1139, 1976, 1998, 2220
CviAII	CATG	9 cut(s)	450, 595, 826, 929, 1011, 1602, 1942, 2045, 2379
CviQI	GTAC	6 cut(s)	229, 500, 1139, 1976, 1998, 2220
DdeI	CTNAG	6 cut(s)	1047, 1365, 1454, 1688, 2055, 2359
DraI	TTTAAA	2 cut(s)	31, 1587
EaeI	YGGCCR	3 cut(s)	220, 1026, 2041
Eam1104I	CTCTTC	4 cut(s)	144, 384, 689, 2622
EarI	CTCTTC	4 cut(s)	144, 384, 689, 2622
Eco130I	CCWWGG	3 cut(s)	825, 2028, 2391
Eco147I	AGGCCT	2 cut(s)	2027, 2184
Eco31I	GGTCTC	3 cut(s)	146, 1068, 1337
Eco32I	GATATC	1 cut(s)	1379
Eco47I	GGWCC	2 cut(s)	2388, 2404
Eco57I	CTGAAG	2 cut(s)	1978, 2570
Eco91I	GGTNACC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	2404
EcoO65I	GGTNACC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	2241
EcoRII	CCWGG	3 cut(s)	1107, 1978, 2347
EcoRV	GATATC	1 cut(s)	1379
EcoT14I	CCWWGG	3 cut(s)	825, 2028, 2391
EcoT22I	ATGCAT	1 cut(s)	1753
ErhI	CCWWGG	3 cut(s)	825, 2028, 2391
Esp3I	CGTCTC	2 cut(s)	1501, 2451
FaeI	CATG	9 cut(s)	453, 598, 829, 932, 1014, 1605, 1945, 2048, 2382
FaqI	GGGAC	1 cut(s)	2417
FatI	CATG	9 cut(s)	449, 594, 825, 928, 1010, 1601, 1941, 2044, 2378
FauNDI	CATATG	1 cut(s)	1501
FbaI	TGATCA	2 cut(s)	634, 843
FblI	GTMKAC	1 cut(s)	1812
Fnu4HI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
Fsp4HI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
FspAI	RTGCGCAY	1 cut(s)	348
FspBI	CTAG	3 cut(s)	477, 1676, 2627
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	348, 2599
GluI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
GsaI	CCCAGC	1 cut(s)	1969
GsuI	CTGGAG	2 cut(s)	2001, 2250
HapII	CCGG	3 cut(s)	117, 816, 2521
HgaI	GACGC	1 cut(s)	1518
HhaI	GCGC	2 cut(s)	349, 2600
Hin1II	CATG	9 cut(s)	453, 598, 829, 932, 1014, 1605, 1945, 2048, 2382
Hin6I	GCGC	2 cut(s)	347, 2598
HinP1I	GCGC	2 cut(s)	347, 2598
HincII	GTYRAC	3 cut(s)	325, 600, 1567
HindII	GTYRAC	3 cut(s)	325, 600, 1567
HindIII	AAGCTT	2 cut(s)	1767, 2356
HinfI	GANTC	9 cut(s)	312, 480, 584, 1325, 1901, 1987, 2189, 2545, 2574
HpaII	CCGG	3 cut(s)	117, 816, 2521
HphI	GGTGA	5 cut(s)	199, 317, 1241, 2407, 2434
HpyAV	CCTTC	6 cut(s)	121, 1454, 1687, 2174, 2227, 2541
HpyCH4III	ACNGT	9 cut(s)	124, 571, 854, 1434, 1617, 1779, 2224, 2281, 2472
HpyCH4IV	ACGT	6 cut(s)	135, 1150, 1857, 2248, 2460, 2568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
HpyF3I	CTNAG	6 cut(s)	1047, 1365, 1454, 1688, 2055, 2359
HpySE526I	ACGT	6 cut(s)	135, 1150, 1857, 2248, 2460, 2568
Hsp92II	CATG	9 cut(s)	453, 598, 829, 932, 1014, 1605, 1945, 2048, 2382
HspAI	GCGC	2 cut(s)	347, 2598
Ksp22I	TGATCA	2 cut(s)	634, 843
LmnI	GCTCC	1 cut(s)	2608
Lsp1109I	GCAGC	5 cut(s)	905, 1200, 1691, 2122, 2178
LweI	GCATC	8 cut(s)	150, 421, 1093, 1162, 1738, 1938, 2267, 2536
MaeI	CTAG	3 cut(s)	477, 1676, 2627
MaeII	ACGT	6 cut(s)	135, 1150, 1857, 2248, 2460, 2568
MbiI	CCGCTC	1 cut(s)	2132
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	2 cut(s)	1193, 1558
MhlI	GDGCHC	1 cut(s)	2568
MlsI	TGGCCA	2 cut(s)	1028, 2043
MluNI	TGGCCA	2 cut(s)	1028, 2043
MlyI	GAGTC	4 cut(s)	321, 1996, 2198, 2539
MmeI	TCCRAC	1 cut(s)	1299
Mox20I	TGGCCA	2 cut(s)	1028, 2043
Mph1103I	ATGCAT	1 cut(s)	1753
MroXI	GAANNNNTTC	2 cut(s)	2241, 2300
MscI	TGGCCA	2 cut(s)	1028, 2043
MslI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2540
Msp20I	TGGCCA	2 cut(s)	1028, 2043
MspI	CCGG	3 cut(s)	117, 816, 2521
MspR9I	CCNGG	4 cut(s)	1109, 1980, 2349, 2522
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	3 cut(s)	1215, 2164, 2369
MvaI	CCWGG	3 cut(s)	1109, 1980, 2349
MwoI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
NciI	CCSGG	1 cut(s)	2522
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	1501
NheI	GCTAGC	1 cut(s)	1675
NlaIII	CATG	9 cut(s)	453, 598, 829, 932, 1014, 1605, 1945, 2048, 2382
NlaIV	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
NmuCI	GTSAC	3 cut(s)	1779, 1988, 2190
NsbI	TGCGCA	1 cut(s)	348
NsiI	ATGCAT	1 cut(s)	1753
NspI	RCATGY	1 cut(s)	1605
NspV	TTCGAA	1 cut(s)	420
OliI	CACNNNNGTG	1 cut(s)	943
PceI	AGGCCT	2 cut(s)	2027, 2184
PciI	ACATGT	1 cut(s)	1601
PcsI	WCGNNNNNNNCGW	4 cut(s)	141, 1761, 2245, 2457
PctI	GAATGC	3 cut(s)	1215, 2164, 2369
PdmI	GAANNNNTTC	2 cut(s)	2241, 2300
PfeI	GAWTC	5 cut(s)	480, 584, 1325, 1901, 2574
PflFI	GACNNNGTC	1 cut(s)	571
PflMI	CCANNNNNTGG	1 cut(s)	1979
PkrI	GCNGC	6 cut(s)	895, 1215, 1681, 2134, 2137, 2168
PleI	GAGTC	4 cut(s)	320, 1995, 2197, 2539
PpsI	GAGTC	4 cut(s)	320, 1995, 2197, 2539
PpuMI	RGGWCCY	1 cut(s)	2404
PscI	ACATGT	1 cut(s)	1601
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	1866
Psp1406I	AACGTT	1 cut(s)	135
Psp5II	RGGWCCY	1 cut(s)	2404
Psp6I	CCWGG	3 cut(s)	1107, 1978, 2347
PspEI	GGTNACC	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	1965
PspGI	CCWGG	3 cut(s)	1107, 1978, 2347
PspN4I	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
PspPI	GGNCC	3 cut(s)	822, 2388, 2404
PspPPI	RGGWCCY	1 cut(s)	2404
PsrI	GAACNNNNNNTAC	2 cut(s)	2229, 2261
PstI	CTGCAG	3 cut(s)	337, 1218, 2122
PstNI	CAGNNNCTG	2 cut(s)	1438, 1979
PsuI	RGATCY	2 cut(s)	1193, 1558
PsyI	GACNNNGTC	1 cut(s)	571
RsaI	GTAC	6 cut(s)	230, 501, 1140, 1977, 1999, 2221
RsaNI	GTAC	6 cut(s)	229, 500, 1139, 1976, 1998, 2220
RseI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2540
SatI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
Sau96I	GGNCC	3 cut(s)	822, 2388, 2404
SchI	GAGTC	4 cut(s)	321, 1996, 2198, 2539
ScrFI	CCNGG	4 cut(s)	1109, 1980, 2349, 2522
SduI	GDGCHC	1 cut(s)	2568
SfaNI	GCATC	8 cut(s)	150, 421, 1093, 1162, 1738, 1938, 2267, 2536
SfcI	CTRYAG	3 cut(s)	333, 1214, 2118
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	2 cut(s)	2388, 2404
SmiMI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2540
SmlI	CTYRAG	2 cut(s)	470, 2186
SmoI	CTYRAG	2 cut(s)	470, 2186
SpeI	ACTAGT	1 cut(s)	2626
SseBI	AGGCCT	2 cut(s)	2027, 2184
SsiI	CCGC	4 cut(s)	320, 800, 2108, 2132
SspI	AATATT	1 cut(s)	1167
SspMI	CTAG	3 cut(s)	477, 1676, 2627
StuI	AGGCCT	2 cut(s)	2027, 2184
StyD4I	CCNGG	4 cut(s)	1107, 1978, 2347, 2520
StyI	CCWWGG	3 cut(s)	825, 2028, 2391
TaaI	ACNGT	9 cut(s)	124, 571, 854, 1434, 1617, 1779, 2224, 2281, 2472
TaiI	ACGT	6 cut(s)	138, 1153, 1860, 2251, 2463, 2571
TaqI	TCGA	6 cut(s)	420, 1170, 1635, 1684, 2074, 2320
TatI	WGTACW	1 cut(s)	1997
TauI	GCSGC	1 cut(s)	2135
TfiI	GAWTC	5 cut(s)	480, 584, 1325, 1901, 2574
TscAI	CASTG	6 cut(s)	950, 1036, 1348, 1546, 1911, 2229
TseFI	GTSAC	3 cut(s)	1779, 1988, 2190
TseI	GCWGC	5 cut(s)	893, 1213, 1679, 2135, 2166
Tsp45I	GTSAC	3 cut(s)	1779, 1988, 2190
TspRI	CASTG	6 cut(s)	950, 1036, 1348, 1546, 1911, 2229
Tth111I	GACNNNGTC	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	1979
VpaK11BI	GGWCC	2 cut(s)	2388, 2404
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	8 cut(s)	52, 710, 809, 1418, 1516, 1730, 2241, 2507
XceI	RCATGY	1 cut(s)	1605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmiI	GTMKAC	1 cut(s)	1812
XmnI	GAANNNNTTC	2 cut(s)	2241, 2300
XspI	CTAG	3 cut(s)	477, 1676, 2627
Zsp2I	ATGCAT	1 cut(s)	1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.