Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

78164629 .. 78168542

Gene Structure 3914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTTGCGGTTCCTGGATTTTCTGGTGGGGCCATGAAGAACTATGGTTTGATCACATACCGTGAAAATGAACTGCTTTTTTATCCTTTGCATTCCACAGCAGCAAGAAAGCAAAGAATGGCAATTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGGTAACAATGGAATGGTGGACTGATTTATGGCTTAACGAGGGTTTTGCAACATGGGTACTTTTGAGACTTTCAACTCTCTACTTTTTGAATTTTTTTTTTCCTTGGATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

92

Amino Acids

10.85

Weight (kDa)

6.82

Isoelectric Point (pI)

15.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	1 - 78	1.1e-33	Peptidase family M1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	256
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	2 cut(s)	240, 256
AjnI	CCWGG	1 cut(s)	13
AleI	CACNNNNGTG	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	113
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	15
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	226
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	2 cut(s)	12, 31
BmrFI	CCNGG	1 cut(s)	15
BsaJI	CCNNGG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	12, 31
BssECI	CCNNGG	1 cut(s)	269
BssMI	GATC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	269
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	62
BstKTI	GATC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	226
BstMBI	GATC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	15
BstSCI	CCNGG	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	32
BtsIMutI	CAGTG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	34, 137, 219
CviJI	RGCY	2 cut(s)	32, 199
CviKI_1	RGCY	2 cut(s)	32, 199
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	3 cut(s)	37, 140, 222
FaiI	YATR	7 cut(s)	35, 45, 58, 138, 196, 220, 277
FatI	CATG	3 cut(s)	33, 136, 218
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	37, 140, 222
Hpy166II	GTNNAC	1 cut(s)	186
Hpy8I	GTNNAC	1 cut(s)	186
HpyCH4III	ACNGT	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	91, 215
Hsp92II	CATG	3 cut(s)	37, 140, 222
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LpnPI	CCDG	3 cut(s)	9, 27, 152
Lsp1109I	GCAGC	1 cut(s)	113
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	49
MfeI	CAATTG	1 cut(s)	123
MluCI	AATT	2 cut(s)	123, 256
MnlI	CCTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	91
MvaI	CCWGG	1 cut(s)	15
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	3 cut(s)	37, 140, 222
NlaIV	GGNNCC	2 cut(s)	12, 31
OliI	CACNNNNGTG	1 cut(s)	151
PctI	GAATGC	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	12, 31
PspPI	GGNCC	1 cut(s)	30
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	30
ScrFI	CCNGG	1 cut(s)	15
SmiMI	CAYNNNNRTG	1 cut(s)	151
Sse9I	AATT	2 cut(s)	123, 256
SsiI	CCGC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	13
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	62
TasI	AATT	2 cut(s)	123, 256
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	50, 84, 153
TspRI	CASTG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.