Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008536.1

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

67487 .. 70702

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008536.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

atgcagaggtcactggcttcatatataaaaaagcatgcctactcgaatgcaaaaacagaagatctatgggctgccctggaggaaggatctggtgaacctgtgaacaagctaatgaattcatggacaaagcaacaaggttacccagttgtttccgtcaagatcaaagatcagaaattggagtttgaacagacacaattcttgtcaagtggttctgaaggcactgggcaatggatcgtgccaataacattatgctgtggctcatatgatgtacgcaaaagtttcctactacaaacaaagtctgaaagtctggacgtaaaggaatttctgggttgctcagtagcggagactggaagcacatgcaataaaaacaatggacaatgtggttggataaagctcaatgtggatcgggcaggtttttacagggtgaaatatgatgatgaacttgcagctcaattaagaaatgcgatagagaagaaatacttgtctgcaactgacagatatggcatcttggatgatgcagctgcccttactacggctcgcaagcagtcttttgtctcattgcttaccttgttgggtgcttacaaagaggaacttgactacacagtgctttcaaatctgattactgtaagttataagctgaaaagaattgttgatgatgctgtacccgagctagtggatctccttaatcagttctttattggccttctccagtaccctgcagagaagcttggttggcaaccaaaaccgggcgagagccatttagatgcaatgttgagaggagaacttttgaccgcccttacttcatttggacatgatctaacaattgatgaagcaatcaggcggtttaatgccttcttagaggacagaaatacatcactccttcctcctgacataagaagggcagcatatgtggctgtaatgcaacgagtaactgcatctaacagatcgggctatgaatctcttctcagagtctacagagagactgatctaagccaggagaagacccgcattttaggttcactagcatcgtgtccagatcctgacataatacttgaagttctcaactttttgttgactaaagaggttcgtagtcaagatgctgtctttggactagctgttggtagtgaaggacgagaaacagcttggacgtggctgaagaataactgggagcacatctctaagacctggggttctggatttctgattactcgctttgtcagtgcaactgtctcacattttgcttccttggataaggtaaaggaagtggaggagttcttcaaagctcatcccaactccgccataactagaaccttgaagcagagcatcgagcgggtaaagatcaacgccaaatgggttgagagcatccagggtgagaagaatcttgccgatgctgtgacggagttggcatacaggaaatactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

473

Amino Acids

53.27

Weight (kDa)

6.64

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	633
Acc36I	ACCTGC	1 cut(s)	401
AccBSI	CCGCTC	1 cut(s)	1330
AccI	GTMKAC	1 cut(s)	972
AciI	CCGC	6 cut(s)	341, 792, 841, 1006, 1296, 1330
AclWI	GGATC	5 cut(s)	94, 239, 411, 684, 1031
AcsI	RAATTY	2 cut(s)	115, 320
AcuI	CTGAAG	2 cut(s)	234, 1175
AfaI	GTAC	3 cut(s)	270, 663, 713
AfiI	CCNNNNNNNGG	2 cut(s)	532, 746
AgsI	TTSAA	5 cut(s)	185, 612, 1055, 1279, 1315
AjiI	CACGTC	1 cut(s)	1149
AjnI	CCWGG	4 cut(s)	75, 993, 1184, 1365
Alw21I	GWGCWC	1 cut(s)	1173
Alw26I	GTCTC	4 cut(s)	338, 559, 974, 1234
AlwI	GGATC	5 cut(s)	94, 239, 411, 684, 1031
AlwNI	CAGNNNCTG	1 cut(s)	1040
Ama87I	CYCGRG	1 cut(s)	665
AoxI	GGCC	1 cut(s)	700
ApeKI	GCWGC	5 cut(s)	71, 446, 518, 521, 902
ApoI	RAATTY	2 cut(s)	115, 320
Asp700I	GAANNNNTTC	1 cut(s)	960
AsuC2I	CCSGG	1 cut(s)	747
AsuHPI	GGTGA	3 cut(s)	104, 436, 1382
AvaI	CYCGRG	1 cut(s)	665
BbsI	GAAGAC	1 cut(s)	1007
Bbv12I	GWGCWC	1 cut(s)	1173
BbvI	GCAGC	5 cut(s)	58, 458, 508, 530, 914
BceAI	ACGGC	1 cut(s)	549
BciT130I	CCWGG	4 cut(s)	77, 995, 1186, 1367
BcnI	CCSGG	1 cut(s)	747
BcoDI	GTCTC	4 cut(s)	338, 559, 974, 1234
BfaI	CTAG	5 cut(s)	671, 1022, 1112, 1305, 1420
BfmI	CTRYAG	2 cut(s)	717, 973
BfuAI	ACCTGC	1 cut(s)	401
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	5 cut(s)	72, 447, 519, 522, 903
BlsI	GCNGC	5 cut(s)	73, 448, 520, 523, 904
Bme1390I	CCNGG	5 cut(s)	77, 747, 995, 1186, 1367
BmeT110I	CYCGRG	1 cut(s)	665
BmgBI	CACGTC	1 cut(s)	1149
BmrFI	CCNGG	5 cut(s)	77, 747, 995, 1186, 1367
BmrI	ACTGGG	3 cut(s)	137, 231, 1174
BmuI	ACTGGG	3 cut(s)	137, 231, 1174
BpiI	GAAGAC	1 cut(s)	1007
BplI	GAGNNNNNCTC	2 cut(s)	1160, 1192
BpmI	CTGGAG	2 cut(s)	98, 692
BpuMI	CCSGG	1 cut(s)	747
BsaJI	CCNNGG	4 cut(s)	75, 1185, 1245, 1366
Bsc4I	CCNNNNNNNGG	2 cut(s)	532, 746
Bse1I	ACTGG	6 cut(s)	18, 143, 226, 352, 709, 1169
Bse3DI	GCAATG	3 cut(s)	233, 557, 774
BseBI	CCWGG	4 cut(s)	77, 995, 1186, 1367
BseDI	CCNNGG	4 cut(s)	75, 1185, 1245, 1366
BseGI	GGATG	3 cut(s)	517, 1285, 1362
BseLI	CCNNNNNNNGG	2 cut(s)	532, 746
BseMI	GCAATG	3 cut(s)	233, 557, 774
BseMII	CTCAG	2 cut(s)	348, 979
BseNI	ACTGG	6 cut(s)	18, 143, 226, 352, 709, 1169
BseRI	GAGGAG	2 cut(s)	792, 1283
BseXI	GCAGC	5 cut(s)	58, 458, 508, 530, 914
BshFI	GGCC	1 cut(s)	702
BsiHKAI	GWGCWC	1 cut(s)	1173
BsiHKCI	CYCGRG	1 cut(s)	665
BsiSI	CCGG	1 cut(s)	746
BslI	CCNNNNNNNGG	2 cut(s)	532, 746
BsmAI	GTCTC	4 cut(s)	338, 559, 974, 1234
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	702
BsoBI	CYCGRG	1 cut(s)	665
Bsp1286I	GDGCHC	1 cut(s)	1173
BspACI	CCGC	6 cut(s)	341, 792, 841, 1006, 1296, 1330
BspANI	GGCC	1 cut(s)	702
BspCNI	CTCAG	2 cut(s)	347, 978
BspMAI	CTGCAG	1 cut(s)	721
BspMI	ACCTGC	1 cut(s)	401
BspPI	GGATC	5 cut(s)	94, 239, 411, 684, 1031
BsrBI	CCGCTC	1 cut(s)	1330
BsrDI	GCAATG	3 cut(s)	233, 557, 774
BsrI	ACTGG	6 cut(s)	18, 143, 226, 352, 709, 1169
BssECI	CCNNGG	4 cut(s)	75, 1185, 1245, 1366
BssT1I	CCWWGG	1 cut(s)	1245
Bst2UI	CCWGG	4 cut(s)	77, 995, 1186, 1367
Bst4CI	ACNGT	3 cut(s)	604, 625, 1228
Bst6I	CTCTTC	1 cut(s)	966
BstC8I	GCNNGC	3 cut(s)	36, 538, 542
BstDEI	CTNAG	5 cut(s)	334, 856, 965, 989, 1179
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	3 cut(s)	517, 1285, 1362
BstMAI	GTCTC	4 cut(s)	338, 559, 974, 1234
BstMWI	GCNNNNNNNGC	2 cut(s)	733, 911
BstNI	CCWGG	4 cut(s)	77, 995, 1186, 1367
BstNSI	RCATGY	2 cut(s)	38, 360
BstPI	GGTNACC	1 cut(s)	137
BstSCI	CCNGG	5 cut(s)	75, 745, 993, 1184, 1365
BstSFI	CTRYAG	2 cut(s)	717, 973
BstV1I	GCAGC	5 cut(s)	58, 458, 508, 530, 914
BstV2I	GAAGAC	1 cut(s)	1007
BstX2I	RGATCY	4 cut(s)	61, 86, 676, 1036
BstYI	RGATCY	4 cut(s)	61, 86, 676, 1036
BsuRI	GGCC	1 cut(s)	702
BtrI	CACGTC	1 cut(s)	1149
BtsCI	GGATG	3 cut(s)	517, 1285, 1362
BtsIMutI	CAGTG	4 cut(s)	11, 219, 609, 1225
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	3 cut(s)	36, 538, 542
CaiI	CAGNNNCTG	1 cut(s)	1040
Csp6I	GTAC	3 cut(s)	269, 662, 712
CviAII	CATG	4 cut(s)	35, 120, 357, 812
CviQI	GTAC	3 cut(s)	269, 662, 712
DdeI	CTNAG	5 cut(s)	334, 856, 965, 989, 1179
Eam1104I	CTCTTC	1 cut(s)	966
EarI	CTCTTC	1 cut(s)	966
EciI	GGCGGA	1 cut(s)	1285
Eco130I	CCWWGG	1 cut(s)	1245
Eco57I	CTGAAG	2 cut(s)	234, 1175
Eco88I	CYCGRG	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	115
EcoRII	CCWGG	4 cut(s)	75, 993, 1184, 1365
EcoT14I	CCWWGG	1 cut(s)	1245
ErhI	CCWWGG	1 cut(s)	1245
FaeI	CATG	4 cut(s)	38, 123, 360, 815
FalI	AAGNNNNNCTT	4 cut(s)	464, 496, 576, 608
FatI	CATG	4 cut(s)	34, 119, 356, 811
FauI	CCCGC	2 cut(s)	1013, 1323
FauNDI	CATATG	2 cut(s)	262, 907
FblI	GTMKAC	1 cut(s)	972
Fnu4HI	GCNGC	5 cut(s)	72, 447, 519, 522, 903
FokI	GGATG	3 cut(s)	524, 1272, 1349
Fsp4HI	GCNGC	5 cut(s)	72, 447, 519, 522, 903
FspBI	CTAG	5 cut(s)	671, 1022, 1112, 1305, 1420
GluI	GCNGC	5 cut(s)	72, 447, 519, 522, 903
GsuI	CTGGAG	2 cut(s)	98, 692
HaeIII	GGCC	1 cut(s)	702
HapII	CCGG	1 cut(s)	746
Hin1II	CATG	4 cut(s)	38, 123, 360, 815
HincII	GTYRAC	1 cut(s)	1074
HindII	GTYRAC	1 cut(s)	1074
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	3 cut(s)	956, 969, 1378
HpaII	CCGG	1 cut(s)	746
HphI	GGTGA	3 cut(s)	104, 436, 1382
Hpy166II	GTNNAC	5 cut(s)	95, 103, 973, 1019, 1074
Hpy188I	TCNGA	6 cut(s)	171, 214, 301, 618, 968, 1203
Hpy188III	TCNNGA	7 cut(s)	157, 308, 887, 1034, 1040, 1094, 1194
Hpy8I	GTNNAC	5 cut(s)	95, 103, 973, 1019, 1074
HpyAV	CCTTC	7 cut(s)	77, 209, 713, 862, 890, 891, 1121
HpyCH4III	ACNGT	3 cut(s)	604, 625, 1228
HpyCH4IV	ACGT	2 cut(s)	312, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	733, 911
HpyF3I	CTNAG	5 cut(s)	334, 856, 965, 989, 1179
HpySE526I	ACGT	2 cut(s)	312, 1148
Hsp92II	CATG	4 cut(s)	38, 123, 360, 815
LmnI	GCTCC	1 cut(s)	1168
Lsp1109I	GCAGC	5 cut(s)	58, 458, 508, 530, 914
MaeI	CTAG	5 cut(s)	671, 1022, 1112, 1305, 1420
MaeII	ACGT	2 cut(s)	312, 1148
MaeIII	GTNAC	4 cut(s)	9, 137, 928, 1393
MbiI	CCGCTC	1 cut(s)	1330
MboII	GAAGA	7 cut(s)	71, 484, 953, 1012, 1168, 1267, 1387
MfeI	CAATTG	1 cut(s)	822
MflI	RGATCY	4 cut(s)	61, 86, 676, 1036
MhlI	GDGCHC	1 cut(s)	1173
MluCI	AATT	7 cut(s)	115, 173, 194, 320, 452, 645, 822
MlyI	GAGTC	1 cut(s)	978
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	73, 580, 770, 853, 894, 1075, 1261
MroXI	GAANNNNTTC	1 cut(s)	960
MseI	TTAA	3 cut(s)	455, 684, 846
MslI	CAYNNNNRTG	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	521
MspI	CCGG	1 cut(s)	746
MspR9I	CCNGG	5 cut(s)	77, 747, 995, 1186, 1367
MunI	CAATTG	1 cut(s)	822
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	4 cut(s)	77, 995, 1186, 1367
MwoI	GCNNNNNNNGC	2 cut(s)	733, 911
NciI	CCSGG	1 cut(s)	747
NdeI	CATATG	2 cut(s)	262, 907
NlaIII	CATG	4 cut(s)	38, 123, 360, 815
NmuCI	GTSAC	2 cut(s)	9, 1393
NspI	RCATGY	2 cut(s)	38, 360
PaeI	GCATGC	1 cut(s)	38
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	960
PfeI	GAWTC	2 cut(s)	956, 1378
PkrI	GCNGC	5 cut(s)	73, 448, 520, 523, 904
PleI	GAGTC	1 cut(s)	977
PpsI	GAGTC	1 cut(s)	977
PsiI	TTATAA	1 cut(s)	633
Psp6I	CCWGG	4 cut(s)	75, 993, 1184, 1365
PspEI	GGTNACC	1 cut(s)	137
PspGI	CCWGG	4 cut(s)	75, 993, 1184, 1365
PstI	CTGCAG	1 cut(s)	721
PstNI	CAGNNNCTG	1 cut(s)	1040
PsuI	RGATCY	4 cut(s)	61, 86, 676, 1036
PvuII	CAGCTG	1 cut(s)	521
RsaI	GTAC	3 cut(s)	270, 663, 713
RsaNI	GTAC	3 cut(s)	269, 662, 712
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	3 cut(s)	455, 684, 846
SatI	GCNGC	5 cut(s)	72, 447, 519, 522, 903
SchI	GAGTC	1 cut(s)	978
ScrFI	CCNGG	5 cut(s)	77, 747, 995, 1186, 1367
SduI	GDGCHC	1 cut(s)	1173
SfcI	CTRYAG	2 cut(s)	717, 973
SmiMI	CAYNNNNRTG	1 cut(s)	762
SphI	GCATGC	1 cut(s)	38
Sse9I	AATT	7 cut(s)	115, 173, 194, 320, 452, 645, 822
SsiI	CCGC	6 cut(s)	341, 792, 841, 1006, 1296, 1330
SspMI	CTAG	5 cut(s)	671, 1022, 1112, 1305, 1420
StyD4I	CCNGG	5 cut(s)	75, 745, 993, 1184, 1365
StyI	CCWWGG	1 cut(s)	1245
TaaI	ACNGT	3 cut(s)	604, 625, 1228
TaiI	ACGT	2 cut(s)	315, 1151
TaqI	TCGA	2 cut(s)	44, 1326
TasI	AATT	7 cut(s)	115, 173, 194, 320, 452, 645, 822
TfiI	GAWTC	2 cut(s)	956, 1378
Tru1I	TTAA	3 cut(s)	455, 684, 846
Tru9I	TTAA	3 cut(s)	455, 684, 846
TscAI	CASTG	4 cut(s)	18, 226, 609, 1225
TseFI	GTSAC	2 cut(s)	9, 1393
TseI	GCWGC	5 cut(s)	71, 446, 518, 521, 902
Tsp45I	GTSAC	2 cut(s)	9, 1393
TspDTI	ATGAA	7 cut(s)	9, 108, 128, 453, 792, 843, 969
TspGWI	ACGGA	2 cut(s)	142, 1412
TspRI	CASTG	4 cut(s)	18, 226, 609, 1225
XapI	RAATTY	2 cut(s)	115, 320
XceI	RCATGY	2 cut(s)	38, 360
XmiI	GTMKAC	1 cut(s)	972
XmnI	GAANNNNTTC	1 cut(s)	960
XspI	CTAG	5 cut(s)	671, 1022, 1112, 1305, 1420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.