Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

5329121 .. 5335519

Gene Structure 6399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1066500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2667 bp

ATGGAGCAGTTCAAAGGCCAGCCCCGGCTTCCGAAATTCGCCGTCCCGAAACGCTACGACGTAAGGCTGAAGCCGGACCTCGCCGCCTGCAAATTCGGCGGCTCCGTCGACATCGACCTGGATATCGTCGCCGATACCAAATTCGTCGTCCTCAACGCCACCGAGCTCTTCGTCAATGCCGGCTCTGTCTCTTTCGCTCACGGAGGCTCGTCCAAGGTTTTCAAGCCTTCGAAGGCCGAGACGTTCGAAGACGATGGAATTTTGGTTTTGGAGTTTGGAGAGATGCTTCCGATTGGGTCTGGAATTTTGGTTATTGAATTTGAAGGAATTTTGAATGACAAGATGAAGGGTTTCTACAGAAGTACATATGAGCACAACGGTGAGAAGAAAAATATGGCAGTTACACAGTTTGAACCCGTTGATGCCAGGCGGTGCTTTCCGTGTTGGGATGAACCTGCTTGCAAGGCTACATTCAAGATTACACTTGATGGTGTTCCGTCTGAACTAGTAGCCCTTTCTAACATGCCAATTCAAGAAGAAAAATTGAATGGACATCAGAACACAGTTTCATATGTGGAAACACCAATTATGTCTACATATTTGGTGGCCATTGTTGTCGGATTGTTTGATTACGTTGAAGATCATACTTCTGATGGGGTCAAAGTGCGGGTATATTGTCAAGTTGGTAAGGCAGACCAAGGGAAGTTTGCTTTGCACGTTGCTGTCAAGACACTTGAATTGTACACAGAGTATGTATACTTTGCTGTGCCATACCCGTTGCCCAAATTGGATATGGTTGCAATACCTGATTTTGCTTTCGGCGCCATGGAGAACTATGGTTTAGTTACATACCGAGAAACAGCTTTGCTTTTTGATGAACAACATTCAGCAGCTGCCAACAAGCAAAGGGTTGCGACTGTCGTGGCACATGAATTGGCACACCAGTGGTTTGGCAATCTTGTAACAATGGAATGGTGGACGCATTTATGGCTGAATGAGGGATTTGCAACATGGGTGAGCTATTTAGCTACTGATAGCTTATTCCCAGAGTGGAAAATATGGACTCAGTTTCTTGATGAAGTTACTGATGGTCTTAAGCTGGATGGGCTTGAAGAATCTCACCCCATTGAGGTGGAGATCAATCATGCTGCTGAGATTGATGAAGTATTTGATGCGATAAGTTATAAAAAAGGTGCTACTGTTATTCGGATGCTACAAAGCTATCTAGGTGCTGAAGTCTTCCAGAGGTCACTTGCTTCATATATCAAAAAGCATGCTTACTCAAATGCAAAGACAGAAGATTTGTGGGCTGCCCTTGAGGAGGGATCTGGTGAACCTGTAAACAAACTAATGAATTCATGGACACAGCAGAAGGGTTACCCGGTTATTTCTGTCAAAGTCAAAGATCAGAAATTGGAGTTTGATCAGACACAATTCTACTCAAGCGGTTCCCAAGGTGATGGGCAATGGATTGTGCCGATCACATTATCCTGTGGCTCGTATGATGTACGCAAGAATTTCCTACTACAAGCGAAGTCTGAAACTCTTGACATAAAGGAATTTCTGGGTTGCTCAGTAGGAAAGGCTGGATGTGGAGGCACAAGCAACAAAGACAATGCTTTCTGCGGTTGGATAAAAGTCAATGTGGATCAGACTGGTTTTTACAGAGTGAAATATGAGGATGAACTTGCAGCTGCACTTAGAAACGCTATCGAAAAGAAGCAATTGTCTGAAACTGACAGATTTGGCATTTTGGATGATTCCTTTGCCCTATCAATGGCTCGCAACCAGTCTTTTGCTTCATTGCTTACCTTGTTGAGTGCATACAGAGAGGAACTTGACTATATCGTGCTGTCAAATTTGATTACTATAAGTTATAATCTGGCAAGAATTGCAGCCGATGCTGTACCCGGACTACTGGATCACATTAAACAATTCTTTATTGGACTTTTCCAGTATTCTGCAGAGAGGCTTGGTTGGCAGCCTAAACCGGGCGAAGGCCATTTAGATGCAATGTTGAGAGGAGAAATTTTGACTGCACTTGCTGTTTTTGGTCATGACCTGACGTTAGATGAAGCAAGTAGGCGTTTTCATGCCTTTATAGAAGACAGAAACACGCCTCTCCTTCCCCCAGACATTAGAAAGGCGGCATATGTGGCTGTAATGCAAAGAACAAGTGTATCTGACCGATCAGGCTATGAATCTCTTGTTAGACTGTACAGAGAGAGTGATCTAAGCCAGGAGAAAACCCGCATTCTAGGTTCTTTAGCGTCTTGTCCCGATCCCAATATTACACTGGAAGTTCTCCAGTTTATATTGACTCCTGAGGTTCGCAGTCAGGATGCTGTATTTGGACTTGCTGTTAGTAATGAAGGTCGGGAAACAGCTTGGATGTGGATGAAGGATAACTGGGAGCACATCTCAAAGACCTGGGGGTCCGGATATCTAATTACTCGCTTTGTCAGTGCAATTGTTTCACCGTTTGCTTCATTTGACAAGGTTAAGGAAGTAGACGAGTTCTTCAAAGCGCATCCCAACCCGAAGATAACTAGAACAGTGAAGCAGAGCATTGAGCGGGTGCAAATCAACGCCAAATGGGTTCAGAGTGTTCAGAGCGAGAGAAACCTTGCCGATGTCGCAACGGAGTTGGCATACCGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00480 ko01100 ko04614 ko04640 map00480 map01100 map04614 map04640

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

889

Amino Acids

99.89

Weight (kDa)

5.29

Isoelectric Point (pI)

33.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	15 - 201	7.4e-48	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	236 - 454	3.9e-88	Peptidase family M1 domain
ERAP1_C	PF11838	544 - 861	1.1e-81	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1185, 1878
AasI	GACNNNNNNGTC	1 cut(s)	2434
Acc36I	ACCTGC	1 cut(s)	463
AccB1I	GGYRCC	1 cut(s)	821
AccBSI	CCGCTC	1 cut(s)	2575
AccI	GTMKAC	4 cut(s)	108, 593, 756, 2511
AccIII	TCCGGA	1 cut(s)	2438
AciI	CCGC	9 cut(s)	84, 99, 430, 667, 1446, 1626, 2147, 2251, 2575
AclWI	GGATC	4 cut(s)	1333, 1656, 1929, 2276
AcoI	YGGCCR	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	89, 1254
AcyI	GRCGYC	1 cut(s)	822
AfaI	GTAC	5 cut(s)	364, 743, 1509, 1908, 2219
AfiI	CCNNNNNNNGG	5 cut(s)	1129, 1321, 1777, 1991, 1997
AflII	CTTAAG	1 cut(s)	1094
AhlI	ACTAGT	1 cut(s)	505
AjnI	CCWGG	4 cut(s)	117, 425, 2238, 2429
AleI	CACNNNNGTG	2 cut(s)	378, 943
Alw21I	GWGCWC	3 cut(s)	168, 375, 2418
Alw26I	GTCTC	2 cut(s)	193, 233
AlwI	GGATC	4 cut(s)	1333, 1656, 1929, 2276
AlwNI	CAGNNNCTG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	2438
AoxI	GGCC	4 cut(s)	16, 234, 606, 1999
ApeKI	GCWGC	8 cut(s)	890, 893, 1148, 1310, 1691, 1694, 1895, 1981
ArsI	GACNNNNNNTTYG	4 cut(s)	132, 164, 1285, 1317
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	824, 2530
AspS9I	GGNCC	2 cut(s)	76, 2436
AsuC2I	CCSGG	4 cut(s)	25, 1382, 1911, 1992
AsuHPI	GGTGA	6 cut(s)	392, 1027, 1112, 1343, 1469, 2469
AsuII	TTCGAA	2 cut(s)	230, 246
AvaII	GGWCC	2 cut(s)	76, 2436
AxyI	CCTNAGG	1 cut(s)	2325
BaeI	ACNNNNGTAYC	2 cut(s)	2163, 2196
BalI	TGGCCA	1 cut(s)	608
BanI	GGYRCC	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	168
BarI	GAAGNNNNNNTAC	2 cut(s)	338, 370
BbsI	GAAGAC	3 cut(s)	255, 1231, 2112
Bbv12I	GWGCWC	3 cut(s)	168, 375, 2418
BbvI	GCAGC	8 cut(s)	880, 902, 1135, 1297, 1681, 1703, 1907, 1993
BccI	CCATC	6 cut(s)	248, 482, 647, 1082, 1097, 1454
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	4 cut(s)	119, 427, 2240, 2431
BclI	TGATCA	1 cut(s)	1423
BcnI	CCSGG	4 cut(s)	25, 1382, 1911, 1992
BcoDI	GTCTC	2 cut(s)	193, 233
BcuI	ACTAGT	1 cut(s)	505
BfaI	CTAG	5 cut(s)	506, 1226, 2258, 2550, 2665
BfmI	CTRYAG	2 cut(s)	355, 1962
BfoI	RGCGCY	1 cut(s)	825
BfrI	CTTAAG	1 cut(s)	1094
BfuAI	ACCTGC	1 cut(s)	463
Bme1390I	CCNGG	8 cut(s)	25, 119, 427, 1382, 1911, 1992, 2240, 2431
Bme18I	GGWCC	2 cut(s)	76, 2436
BmgT120I	GGNCC	2 cut(s)	76, 2436
BmiI	GGNNCC	4 cut(s)	103, 823, 1450, 2437
BmrFI	CCNGG	8 cut(s)	25, 119, 427, 1382, 1911, 1992, 2240, 2431
BmrI	ACTGGG	1 cut(s)	2419
BmsI	GCATC	8 cut(s)	273, 412, 1162, 1200, 1891, 1999, 2332, 2539
BmuI	ACTGGG	1 cut(s)	2419
BpiI	GAAGAC	3 cut(s)	255, 1231, 2112
BplI	GAGNNNNNCTC	2 cut(s)	2405, 2437
BpmI	CTGGAG	1 cut(s)	2291
Bpu14I	TTCGAA	2 cut(s)	230, 246
BpuEI	CTTGAG	2 cut(s)	1337, 1426
BpuMI	CCSGG	4 cut(s)	25, 1382, 1911, 1992
BsaHI	GRCGYC	1 cut(s)	822
BsaJI	CCNNGG	6 cut(s)	23, 213, 697, 825, 1453, 2430
BsaWI	WCCGGW	2 cut(s)	2438, 2655
Bsc4I	CCNNNNNNNGG	5 cut(s)	1129, 1321, 1777, 1991, 1997
Bse118I	RCCGGY	1 cut(s)	179
Bse1I	ACTGG	8 cut(s)	943, 1660, 1789, 1923, 1954, 2301, 2308, 2414
Bse21I	CCTNAGG	1 cut(s)	2325
Bse3DI	GCAATG	3 cut(s)	1472, 1802, 2019
BseAI	TCCGGA	1 cut(s)	2438
BseBI	CCWGG	4 cut(s)	119, 427, 2240, 2431
BseDI	CCNNGG	6 cut(s)	23, 213, 697, 825, 1453, 2430
BseLI	CCNNNNNNNGG	5 cut(s)	1129, 1321, 1777, 1991, 1997
BseMI	GCAATG	3 cut(s)	1472, 1802, 2019
BseMII	CTCAG	4 cut(s)	1079, 1143, 1587, 2316
BseNI	ACTGG	8 cut(s)	943, 1660, 1789, 1923, 1954, 2301, 2308, 2414
BseRI	GAGGAG	2 cut(s)	1334, 2037
BseXI	GCAGC	8 cut(s)	880, 902, 1135, 1297, 1681, 1703, 1907, 1993
BsgI	GTGCAG	2 cut(s)	1680, 2022
BshFI	GGCC	4 cut(s)	18, 236, 608, 2001
BshNI	GGYRCC	1 cut(s)	821
BsiHKAI	GWGCWC	3 cut(s)	168, 375, 2418
BsiSI	CCGG	8 cut(s)	25, 74, 180, 1382, 1911, 1991, 2439, 2656
BslFI	GGGAC	2 cut(s)	29, 2262
BslI	CCNNNNNNNGG	5 cut(s)	1129, 1321, 1777, 1991, 1997
BsmAI	GTCTC	2 cut(s)	193, 233
BsmBI	CGTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	29, 2262
BsmI	GAATGC	1 cut(s)	2253
BsnI	GGCC	4 cut(s)	18, 236, 608, 2001
Bsp119I	TTCGAA	2 cut(s)	230, 246
Bsp1286I	GDGCHC	3 cut(s)	168, 375, 2418
Bsp13I	TCCGGA	1 cut(s)	2438
Bsp1407I	TGTACA	2 cut(s)	741, 2217
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	9 cut(s)	84, 99, 430, 667, 1446, 1626, 2147, 2251, 2575
BspANI	GGCC	4 cut(s)	18, 236, 608, 2001
BspCNI	CTCAG	4 cut(s)	1078, 1144, 1586, 2317
BspEI	TCCGGA	1 cut(s)	2438
BspHI	TCATGA	1 cut(s)	2056
BspLI	GGNNCC	4 cut(s)	103, 823, 1450, 2437
BspMAI	CTGCAG	1 cut(s)	1966
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	4 cut(s)	1333, 1656, 1929, 2276
BspQI	GCTCTTC	1 cut(s)	173
BspT104I	TTCGAA	2 cut(s)	230, 246
BspT107I	GGYRCC	1 cut(s)	821
BspTI	CTTAAG	1 cut(s)	1094
BsrBI	CCGCTC	1 cut(s)	2575
BsrDI	GCAATG	3 cut(s)	1472, 1802, 2019
BsrFI	RCCGGY	1 cut(s)	179
BsrGI	TGTACA	2 cut(s)	741, 2217
BsrI	ACTGG	8 cut(s)	943, 1660, 1789, 1923, 1954, 2301, 2308, 2414
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	6 cut(s)	23, 213, 697, 825, 1453, 2430
BssNAI	GTATAC	1 cut(s)	757
BssNI	GRCGYC	1 cut(s)	822
BssT1I	CCWWGG	4 cut(s)	213, 697, 825, 1453
Bst1107I	GTATAC	1 cut(s)	757
Bst2UI	CCWGG	4 cut(s)	119, 427, 2240, 2431
Bst4CI	ACNGT	8 cut(s)	380, 408, 565, 919, 1201, 2217, 2481, 2557
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	822
BstAFI	CTTAAG	1 cut(s)	1094
BstAPI	GCANNNNNTGC	2 cut(s)	1892, 1901
BstAUI	TGTACA	2 cut(s)	741, 2217
BstBI	TTCGAA	2 cut(s)	230, 246
BstC8I	GCNNGC	6 cut(s)	20, 88, 181, 460, 1275, 1783
BstDEI	CTNAG	6 cut(s)	1065, 1152, 1573, 1700, 2234, 2325
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	1376
BstENI	CCTNNNNNAGG	1 cut(s)	1319
BstH2I	RGCGCY	1 cut(s)	825
BstHHI	GCGC	2 cut(s)	824, 2530
BstMAI	GTCTC	2 cut(s)	193, 233
BstNI	CCWGG	4 cut(s)	119, 427, 2240, 2431
BstNSI	RCATGY	2 cut(s)	526, 1277
BstPI	GGTNACC	1 cut(s)	1376
BstSCI	CCNGG	8 cut(s)	23, 117, 425, 1380, 1909, 1990, 2238, 2429
BstSFI	CTRYAG	2 cut(s)	355, 1962
BstV1I	GCAGC	8 cut(s)	880, 902, 1135, 1297, 1681, 1703, 1907, 1993
BstV2I	GAAGAC	3 cut(s)	255, 1231, 2112
BstX2I	RGATCY	1 cut(s)	1325
BstXI	CCANNNNNNTGG	3 cut(s)	950, 1132, 1460
BstYI	RGATCY	1 cut(s)	1325
BstZ17I	GTATAC	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	2325
BsuRI	GGCC	4 cut(s)	18, 236, 608, 2001
BtgI	CCRYGG	1 cut(s)	825
BtsIMutI	CAGTG	4 cut(s)	950, 2294, 2470, 2562
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	6 cut(s)	20, 88, 181, 460, 1275, 1783
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	1 cut(s)	2056
CfoI	GCGC	2 cut(s)	824, 2530
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	76, 2436
CseI	GACGC	2 cut(s)	988, 2259
Csp6I	GTAC	5 cut(s)	363, 742, 1508, 1907, 2218
CviAII	CATG	9 cut(s)	523, 826, 929, 1011, 1145, 1274, 1359, 2057, 2093
CviQI	GTAC	5 cut(s)	363, 742, 1508, 1907, 2218
DdeI	CTNAG	6 cut(s)	1065, 1152, 1573, 1700, 2234, 2325
DinI	GGCGCC	1 cut(s)	823
DrdI	GACNNNNNNGTC	1 cut(s)	2434
DseDI	GACNNNNNNGTC	1 cut(s)	2434
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	4 cut(s)	213, 697, 825, 1453
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	2 cut(s)	124, 2444
Eco47I	GGWCC	2 cut(s)	76, 2436
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	2 cut(s)	89, 1254
Eco81I	CCTNAGG	1 cut(s)	2325
Eco91I	GGTNACC	1 cut(s)	1376
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	1319
EcoO65I	GGTNACC	1 cut(s)	1376
EcoRI	GAATTC	1 cut(s)	1354
EcoRII	CCWGG	4 cut(s)	117, 425, 2238, 2429
EcoRV	GATATC	2 cut(s)	124, 2444
EcoT14I	CCWWGG	4 cut(s)	213, 697, 825, 1453
EcoT38I	GRGCYC	1 cut(s)	168
EgeI	GGCGCC	1 cut(s)	823
EheI	GGCGCC	1 cut(s)	823
ErhI	CCWWGG	4 cut(s)	213, 697, 825, 1453
Esp3I	CGTCTC	1 cut(s)	233
FaeI	CATG	9 cut(s)	526, 829, 932, 1014, 1148, 1277, 1362, 2060, 2096
FaqI	GGGAC	2 cut(s)	29, 2262
FatI	CATG	9 cut(s)	522, 825, 928, 1010, 1144, 1273, 1358, 2056, 2092
FauI	CCCGC	3 cut(s)	660, 2258, 2568
FauNDI	CATATG	3 cut(s)	367, 571, 2152
FbaI	TGATCA	1 cut(s)	1423
FblI	GTMKAC	4 cut(s)	108, 593, 756, 2511
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	5 cut(s)	506, 1226, 2258, 2550, 2665
GlaI	GCGC	2 cut(s)	823, 2529
GsuI	CTGGAG	1 cut(s)	2291
HaeII	RGCGCY	1 cut(s)	825
HaeIII	GGCC	4 cut(s)	18, 236, 608, 2001
HapII	CCGG	8 cut(s)	25, 74, 180, 1382, 1911, 1991, 2439, 2656
HgaI	GACGC	2 cut(s)	988, 2259
HhaI	GCGC	2 cut(s)	824, 2530
Hin1I	GRCGYC	1 cut(s)	822
Hin1II	CATG	9 cut(s)	526, 829, 932, 1014, 1148, 1277, 1362, 2060, 2096
Hin6I	GCGC	2 cut(s)	822, 2528
HinP1I	GCGC	2 cut(s)	822, 2528
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	5 cut(s)	1063, 1115, 1760, 2201, 2320
HpaII	CCGG	8 cut(s)	25, 74, 180, 1382, 1911, 1991, 2439, 2656
HphI	GGTGA	6 cut(s)	392, 1027, 1112, 1343, 1469, 2469
Hpy166II	GTNNAC	8 cut(s)	109, 594, 744, 757, 978, 1334, 1342, 2512
Hpy8I	GTNNAC	8 cut(s)	109, 594, 744, 757, 978, 1334, 1342, 2512
Hpy99I	CGWCG	4 cut(s)	62, 110, 131, 149
HpyAV	CCTTC	9 cut(s)	226, 237, 317, 340, 1366, 1991, 2135, 2366, 2395
HpyCH4III	ACNGT	8 cut(s)	380, 408, 565, 919, 1201, 2217, 2481, 2557
HpyCH4IV	ACGT	5 cut(s)	60, 242, 633, 717, 2066
HpyF3I	CTNAG	6 cut(s)	1065, 1152, 1573, 1700, 2234, 2325
HpySE526I	ACGT	5 cut(s)	60, 242, 633, 717, 2066
Hsp92I	GRCGYC	1 cut(s)	822
Hsp92II	CATG	9 cut(s)	526, 829, 932, 1014, 1148, 1277, 1362, 2060, 2096
HspAI	GCGC	2 cut(s)	822, 2528
KasI	GGCGCC	1 cut(s)	821
Kpn2I	TCCGGA	1 cut(s)	2438
KroI	GCCGGC	1 cut(s)	179
KroNI	GCCGGC	1 cut(s)	181
Ksp22I	TGATCA	1 cut(s)	1423
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	3 cut(s)	4, 107, 2413
Lsp1109I	GCAGC	8 cut(s)	880, 902, 1135, 1297, 1681, 1703, 1907, 1993
LweI	GCATC	8 cut(s)	273, 412, 1162, 1200, 1891, 1999, 2332, 2539
MaeI	CTAG	5 cut(s)	506, 1226, 2258, 2550, 2665
MaeII	ACGT	5 cut(s)	60, 242, 633, 717, 2066
MaeIII	GTNAC	6 cut(s)	400, 844, 961, 1081, 1248, 1376
MbiI	CCGCTC	1 cut(s)	2575
MfeI	CAATTG	2 cut(s)	1724, 2469
MflI	RGATCY	1 cut(s)	1325
MhlI	GDGCHC	3 cut(s)	168, 375, 2418
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
Mly113I	GGCGCC	1 cut(s)	822
MlyI	GAGTC	2 cut(s)	1057, 2314
MmeI	TCCRAC	2 cut(s)	598, 1610
Mox20I	TGGCCA	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	2438
MroNI	GCCGGC	1 cut(s)	179
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	1095, 1929, 2502
MslI	CAYNNNNRTG	4 cut(s)	378, 943, 1130, 2007
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	893, 1694
MspCI	CTTAAG	1 cut(s)	1094
MspI	CCGG	8 cut(s)	25, 74, 180, 1382, 1911, 1991, 2439, 2656
MspR9I	CCNGG	8 cut(s)	25, 119, 427, 1382, 1911, 1992, 2240, 2431
MunI	CAATTG	2 cut(s)	1724, 2469
Mva1269I	GAATGC	1 cut(s)	2253
MvaI	CCWGG	4 cut(s)	119, 427, 2240, 2431
NaeI	GCCGGC	1 cut(s)	181
NarI	GGCGCC	1 cut(s)	822
NciI	CCSGG	4 cut(s)	25, 1382, 1911, 1992
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	3 cut(s)	367, 571, 2152
NgoMIV	GCCGGC	1 cut(s)	179
NlaIII	CATG	9 cut(s)	526, 829, 932, 1014, 1148, 1277, 1362, 2060, 2096
NlaIV	GGNNCC	4 cut(s)	103, 823, 1450, 2437
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	1248
NspI	RCATGY	2 cut(s)	526, 1277
NspV	TTCGAA	2 cut(s)	230, 246
OliI	CACNNNNGTG	2 cut(s)	378, 943
PaeI	GCATGC	1 cut(s)	1277
PagI	TCATGA	1 cut(s)	2056
PciSI	GCTCTTC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	2253
PdiI	GCCGGC	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	3 cut(s)	1115, 1760, 2201
PleI	GAGTC	2 cut(s)	1057, 2314
PluTI	GGCGCC	1 cut(s)	825
PpsI	GAGTC	2 cut(s)	1057, 2314
PsiI	TTATAA	2 cut(s)	1185, 1878
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	117, 425, 2238, 2429
PspEI	GGTNACC	1 cut(s)	1376
PspGI	CCWGG	4 cut(s)	117, 425, 2238, 2429
PspN4I	GGNNCC	4 cut(s)	103, 823, 1450, 2437
PspPI	GGNCC	2 cut(s)	76, 2436
PstI	CTGCAG	1 cut(s)	1966
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	1325
PvuII	CAGCTG	2 cut(s)	893, 1694
RsaI	GTAC	5 cut(s)	364, 743, 1509, 1908, 2219
RsaNI	GTAC	5 cut(s)	363, 742, 1508, 1907, 2218
RseI	CAYNNNNRTG	4 cut(s)	378, 943, 1130, 2007
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	107
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	3 cut(s)	1095, 1929, 2502
Sau96I	GGNCC	2 cut(s)	76, 2436
SchI	GAGTC	2 cut(s)	1057, 2314
ScrFI	CCNGG	8 cut(s)	25, 119, 427, 1382, 1911, 1992, 2240, 2431
SduI	GDGCHC	3 cut(s)	168, 375, 2418
SfaNI	GCATC	8 cut(s)	273, 412, 1162, 1200, 1891, 1999, 2332, 2539
SfcI	CTRYAG	2 cut(s)	355, 1962
SfoI	GGCGCC	1 cut(s)	823
SfuI	TTCGAA	2 cut(s)	230, 246
SinI	GGWCC	2 cut(s)	76, 2436
SmiMI	CAYNNNNRTG	4 cut(s)	378, 943, 1130, 2007
SmlI	CTYRAG	3 cut(s)	1094, 1316, 1441
SmoI	CTYRAG	3 cut(s)	1094, 1316, 1441
SpeI	ACTAGT	1 cut(s)	505
SphI	GCATGC	1 cut(s)	1277
SsiI	CCGC	9 cut(s)	84, 99, 430, 667, 1446, 1626, 2147, 2251, 2575
SspDI	GGCGCC	1 cut(s)	821
SspI	AATATT	1 cut(s)	2290
SspMI	CTAG	5 cut(s)	506, 1226, 2258, 2550, 2665
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	8 cut(s)	23, 117, 425, 1380, 1909, 1990, 2238, 2429
StyI	CCWWGG	4 cut(s)	213, 697, 825, 1453
TaaI	ACNGT	8 cut(s)	380, 408, 565, 919, 1201, 2217, 2481, 2557
TaiI	ACGT	5 cut(s)	63, 245, 636, 720, 2069
TaqI	TCGA	5 cut(s)	108, 114, 230, 246, 1713
TaqII	GACCGA	1 cut(s)	2202
TatI	WGTACW	3 cut(s)	362, 741, 2217
TauI	GCSGC	3 cut(s)	86, 102, 2150
TfiI	GAWTC	3 cut(s)	1115, 1760, 2201
Tru1I	TTAA	3 cut(s)	1095, 1929, 2502
Tru9I	TTAA	3 cut(s)	1095, 1929, 2502
TscAI	CASTG	4 cut(s)	950, 2301, 2470, 2562
TseFI	GTSAC	1 cut(s)	1248
TseI	GCWGC	8 cut(s)	890, 893, 1148, 1310, 1691, 1694, 1895, 1981
Tsp45I	GTSAC	1 cut(s)	1248
TspGWI	ACGGA	5 cut(s)	94, 216, 429, 486, 2657
TspRI	CASTG	4 cut(s)	950, 2301, 2470, 2562
Vha464I	CTTAAG	1 cut(s)	1094
VpaK11BI	GGWCC	2 cut(s)	76, 2436
XagI	CCTNNNNNAGG	1 cut(s)	1319
XceI	RCATGY	2 cut(s)	526, 1277
XcmI	CCANNNNNNNNNTGG	2 cut(s)	790, 2293
XmiI	GTMKAC	4 cut(s)	108, 593, 756, 2511
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	5 cut(s)	506, 1226, 2258, 2550, 2665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.