Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

7227098 .. 7228692

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00084720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGAGTTTGAGCGTCCACTTGGGCTGGGAGTTTTGGCTTTTGGGTTCGAAGGAAATTTGAAAGACAATATGAATGGATTCTATATAAGAATACTGGCTCAGCATTCTGCAGCTTCCAGCAAGCAAAATGTAACAATAATCGTGGCACATGAATTGGCACACGAATGGTTTGGCAATCTTGTAACCATGGAATGGTGGACACATTTATCGCTCAGTGAGGGATTTTCAACATGGATGAGCTACTTAGCTACCGAGAGTTTGTACTCAATTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

91

Amino Acids

10.33

Weight (kDa)

5.12

Isoelectric Point (pI)

20.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	34 - 89	4.1e-21	Peptidase family M1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	55
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	61, 228
AluBI	AGCT	3 cut(s)	113, 240, 248
AluI	AGCT	3 cut(s)	113, 240, 248
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	55
Asp700I	GAANNNNTTC	1 cut(s)	77
AsuII	TTCGAA	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	112
Bpu1102I	GCTNAGC	1 cut(s)	99
Bpu14I	TTCGAA	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	99
BseDI	CCNNGG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	113, 226
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	25
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	103
Bsp119I	TTCGAA	1 cut(s)	48
Bsp1720I	GCTNAGC	1 cut(s)	99
Bsp19I	CCATGG	1 cut(s)	186
BspCNI	CTCAG	2 cut(s)	112, 225
BspMAI	CTGCAG	1 cut(s)	112
BspT104I	TTCGAA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	99
BssECI	CCNNGG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	186
BstBI	TTCGAA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	122
BstDEI	CTNAG	3 cut(s)	99, 212, 244
BstDSI	CCRYGG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	122
CseI	GACGC	1 cut(s)	2
Csp6I	GTAC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	123, 158
CviAII	CATG	3 cut(s)	149, 187, 231
CviJI	RGCY	6 cut(s)	25, 38, 98, 113, 240, 248
CviKI_1	RGCY	6 cut(s)	25, 38, 98, 113, 240, 248
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	99, 212, 244
Eco130I	CCWWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	186
ErhI	CCWWGG	1 cut(s)	186
FaeI	CATG	3 cut(s)	152, 190, 234
FaiI	YATR	6 cut(s)	71, 84, 86, 150, 188, 232
FatI	CATG	3 cut(s)	148, 186, 230
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	247
Fsp4HI	GCNGC	1 cut(s)	111
GluI	GCNGC	1 cut(s)	111
GsaI	CCCAGC	1 cut(s)	29
HgaI	GACGC	1 cut(s)	2
Hin1II	CATG	3 cut(s)	152, 190, 234
HinfI	GANTC	1 cut(s)	78
Hpy166II	GTNNAC	2 cut(s)	17, 198
Hpy188III	TCNNGA	1 cut(s)	273
Hpy8I	GTNNAC	2 cut(s)	17, 198
HpyAV	CCTTC	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	110
HpyF3I	CTNAG	3 cut(s)	99, 212, 244
Hsp92II	CATG	3 cut(s)	152, 190, 234
LpnPI	CCDG	3 cut(s)	11, 80, 130
Lsp1109I	GCAGC	1 cut(s)	122
MaeIII	GTNAC	2 cut(s)	130, 181
MluCI	AATT	3 cut(s)	55, 152, 267
MnlI	CCTC	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	186
NlaIII	CATG	3 cut(s)	152, 190, 234
NspV	TTCGAA	1 cut(s)	48
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	112
PspFI	CCCAGC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	163
SatI	GCNGC	1 cut(s)	111
SetI	ASST	3 cut(s)	115, 242, 250
SfcI	CTRYAG	1 cut(s)	108
SfuI	TTCGAA	1 cut(s)	48
SmiMI	CAYNNNNRTG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	55, 152, 267
StyI	CCWWGG	1 cut(s)	186
TaqI	TCGA	1 cut(s)	48
TasI	AATT	3 cut(s)	55, 152, 267
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	86, 165
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	192
XapI	RAATTY	1 cut(s)	55
XmnI	GAANNNNTTC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.