RLG00000009010

Aminopeptidase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
44790151 .. 44792164
2014 bp
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UTR
Exon/CDS
Intron
RLM00000009010

Sequence Viewer

Length: 831 bp
ATGAAGCCTATGAATGCTGAGACAAGTAGAGCTAAGAAGGAGTTGAAGCACCTGAAGGTTTTGAGGATGGTAGTGATTTACATAATGATGTTTGTGTTGAATCTATACGAGTACGCGAAGAAGAACTTGGGGCCTCTGAGATCGATTGTGTGGGCTATGGAGGTTGCTATAATCAATATTGTTGCTCCAATCTATCGGAGATTCGAAGGAGTGCCTAAAGATTTCCTTGGTTTACTCGACACGAAGAAAAAGAATATGGCTGTTACTCAATTCGAAGCTGTGGATGAGAGGAGGTGCTTTCCATGTTGGGATGAACCTGCTCTCAAGGCTAGCTTTAAGATAGCATTAGATGTACCATCAGAGCTGACCGCTTTATCCAATATGCCTATTATTAATGAAAAGTTTGATGGAGATGTTAAGACTGGGTATTTTGAGGAATCTCCAATCATGTCAACTTATTTGGTGGCTGTTGTTCTTGGCCTATTTGATCATATTGAAGATACAACATCTGATGGGGTAAAGGTTCGTGCATATTGCCCTGTTGGGAAGAGTGATAAAAGGGGAATTTCCAAATACTTCTCAACGCTTTACTCACTCCCCAAACTTGATATGGTTGCGGATTCTGAATTTTCTGGTGGGGCCATGGAGAAATATGGTTTGATCACATATCGTGAAAATGAACTGCTTTTTGATTCTTTGCATTCCACAGCAGCAAGAAAGCAAAGAATGGCAACTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGATAACAATGGAATGGTGGACTGATTTATGGCTTAACGAGGGTTTTGCAACATGA

Protein Analysis

277

Amino Acids

31.51

Weight (kDa)

6.54

Isoelectric Point (pI)

33.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
REF PF05755 11 - 90 6.5e-20 Rubber elongation factor protein (REF)
Peptidase_M1_N PF17900 81 - 154 9.2e-25 Peptidase M1 N-terminal domain
Peptidase_M1 PF01433 190 - 276 1.5e-36 Peptidase family M1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 325
AccII CGCG 1 cut(s) 116
AciI CCGC 2 cut(s) 369, 617
AcsI RAATTY 2 cut(s) 564, 626
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 2 cut(s) 113, 354
AgsI TTSAA 3 cut(s) 46, 100, 497
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AleI CACNNNNGTG 1 cut(s) 760
AluBI AGCT 4 cut(s) 32, 278, 333, 364
AluI AGCT 4 cut(s) 32, 278, 333, 364
Alw26I GTCTC 1 cut(s) 14
AoxI GGCC 3 cut(s) 131, 478, 639
ApeKI GCWGC 1 cut(s) 710
ApoI RAATTY 2 cut(s) 564, 626
AseI ATTAAT 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 131, 639
AsuII TTCGAA 2 cut(s) 204, 273
AsuNHI GCTAGC 1 cut(s) 329
BaeI ACNNNNGTAYC 2 cut(s) 723, 756
BbvI GCAGC 1 cut(s) 722
BccI CCATC 4 cut(s) 61, 364, 401, 506
BcgI CGANNNNNNTGC 1 cut(s) 803
BclI TGATCA 2 cut(s) 487, 660
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 325
BisI GCNGC 1 cut(s) 711
BlsI GCNGC 1 cut(s) 712
BmgT120I GGNCC 2 cut(s) 131, 639
BmiI GGNNCC 2 cut(s) 132, 640
BmrI ACTGGG 1 cut(s) 432
BmtI GCTAGC 1 cut(s) 333
BmuI ACTGGG 1 cut(s) 432
Bpu14I TTCGAA 2 cut(s) 204, 273
BpuEI CTTGAG 1 cut(s) 308
Bsa29I ATCGAT 1 cut(s) 143
BsaJI CCNNGG 2 cut(s) 226, 642
Bse1I ACTGG 1 cut(s) 427
BseCI ATCGAT 1 cut(s) 143
BseDI CCNNGG 2 cut(s) 226, 642
BseGI GGATG 3 cut(s) 72, 289, 316
BseMII CTCAG 2 cut(s) 9, 128
BseNI ACTGG 1 cut(s) 427
BseRI GAGGAG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 722
Bsh1236I CGCG 1 cut(s) 116
BshFI GGCC 3 cut(s) 133, 480, 641
BshVI ATCGAT 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 14
BsmI GAATGC 2 cut(s) 19, 700
BsnI GGCC 3 cut(s) 133, 480, 641
Bsp119I TTCGAA 2 cut(s) 204, 273
Bsp143I GATC 3 cut(s) 140, 487, 660
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 2 cut(s) 369, 617
BspANI GGCC 3 cut(s) 133, 480, 641
BspCNI CTCAG 2 cut(s) 10, 129
BspDI ATCGAT 1 cut(s) 143
BspFNI CGCG 1 cut(s) 116
BspLI GGNNCC 2 cut(s) 132, 640
BspMI ACCTGC 1 cut(s) 325
BspOI GCTAGC 1 cut(s) 333
BspT104I TTCGAA 2 cut(s) 204, 273
BsrI ACTGG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 226, 642
BssMI GATC 3 cut(s) 140, 487, 660
BssT1I CCWWGG 2 cut(s) 226, 642
Bst4CI ACNGT 1 cut(s) 736
Bst6I CTCTTC 1 cut(s) 542
BstBI TTCGAA 2 cut(s) 204, 273
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 3 cut(s) 18, 33, 137
BstDSI CCRYGG 1 cut(s) 642
BstF5I GGATG 3 cut(s) 72, 289, 316
BstFNI CGCG 1 cut(s) 116
BstKTI GATC 3 cut(s) 143, 490, 663
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 140, 487, 660
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstUI CGCG 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 722
Bsu15I ATCGAT 1 cut(s) 143
BsuRI GGCC 3 cut(s) 133, 480, 641
BsuTUI ATCGAT 1 cut(s) 143
BtgI CCRYGG 1 cut(s) 642
BtsCI GGATG 3 cut(s) 72, 289, 316
BtsIMutI CAGTG 1 cut(s) 767
BveI ACCTGC 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 131, 639
ClaI ATCGAT 1 cut(s) 143
Csp6I GTAC 2 cut(s) 112, 353
CviAII CATG 5 cut(s) 303, 448, 643, 746, 828
CviQI GTAC 2 cut(s) 112, 353
DdeI CTNAG 3 cut(s) 18, 33, 137
DpnI GATC 3 cut(s) 142, 489, 662
DpnII GATC 3 cut(s) 140, 487, 660
Eam1104I CTCTTC 1 cut(s) 542
EarI CTCTTC 1 cut(s) 542
Eco130I CCWWGG 2 cut(s) 226, 642
Eco57I CTGAAG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 131
EcoT14I CCWWGG 2 cut(s) 226, 642
ErhI CCWWGG 2 cut(s) 226, 642
FaeI CATG 5 cut(s) 306, 451, 646, 749, 831
FalI AAGNNNNNCTT 6 cut(s) 110, 142, 210, 242, 317, 349
FatI CATG 5 cut(s) 302, 447, 642, 745, 827
FbaI TGATCA 2 cut(s) 487, 660
Fnu4HI GCNGC 1 cut(s) 711
FokI GGATG 3 cut(s) 79, 296, 323
Fsp4HI GCNGC 1 cut(s) 711
FspBI CTAG 1 cut(s) 330
GluI GCNGC 1 cut(s) 711
HaeIII GGCC 3 cut(s) 133, 480, 641
Hin1II CATG 5 cut(s) 306, 451, 646, 749, 831
HincII GTYRAC 1 cut(s) 453
HindII GTYRAC 1 cut(s) 453
HinfI GANTC 5 cut(s) 100, 201, 437, 620, 692
Hpy166II GTNNAC 3 cut(s) 233, 453, 795
Hpy188I TCNGA 6 cut(s) 138, 198, 361, 511, 625, 777
Hpy188III TCNNGA 1 cut(s) 671
Hpy8I GTNNAC 3 cut(s) 233, 453, 795
HpyAV CCTTC 3 cut(s) 31, 49, 200
HpyCH4III ACNGT 1 cut(s) 736
HpyCH4V TGCA 3 cut(s) 530, 700, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 3 cut(s) 18, 33, 137
Hsp92II CATG 5 cut(s) 306, 451, 646, 749, 831
Ksp22I TGATCA 2 cut(s) 487, 660
Kzo9I GATC 3 cut(s) 140, 487, 660
LmnI GCTCC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 65, 330, 408, 552, 618
Lsp1109I GCAGC 1 cut(s) 722
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 262
MalI GATC 3 cut(s) 142, 489, 662
MboI GATC 3 cut(s) 140, 487, 660
MboII GAAGA 5 cut(s) 130, 133, 256, 509, 559
MluCI AATT 3 cut(s) 269, 564, 626
MnlI CCTC 7 cut(s) 57, 144, 154, 282, 285, 427, 808
MseI TTAA 4 cut(s) 336, 393, 417, 810
MslI CAYNNNNRTG 2 cut(s) 86, 760
Mva1269I GAATGC 2 cut(s) 19, 700
MvnI CGCG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 326
NcoI CCATGG 1 cut(s) 642
NdeII GATC 3 cut(s) 140, 487, 660
NheI GCTAGC 1 cut(s) 329
NlaIII CATG 5 cut(s) 306, 451, 646, 749, 831
NlaIV GGNNCC 2 cut(s) 132, 640
NspV TTCGAA 2 cut(s) 204, 273
OliI CACNNNNGTG 1 cut(s) 760
PctI GAATGC 2 cut(s) 19, 700
PfeI GAWTC 5 cut(s) 100, 201, 437, 620, 692
PkrI GCNGC 1 cut(s) 712
PshBI ATTAAT 1 cut(s) 393
PspN4I GGNNCC 2 cut(s) 132, 640
PspPI GGNCC 2 cut(s) 131, 639
RsaI GTAC 2 cut(s) 113, 354
RsaNI GTAC 2 cut(s) 112, 353
RseI CAYNNNNRTG 2 cut(s) 86, 760
SaqAI TTAA 4 cut(s) 336, 393, 417, 810
SatI GCNGC 1 cut(s) 711
Sau3AI GATC 3 cut(s) 140, 487, 660
Sau96I GGNCC 2 cut(s) 131, 639
SfuI TTCGAA 2 cut(s) 204, 273
SmiMI CAYNNNNRTG 2 cut(s) 86, 760
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse9I AATT 3 cut(s) 269, 564, 626
SsiI CCGC 2 cut(s) 369, 617
SspI AATATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 2 cut(s) 226, 642
TaaI ACNGT 1 cut(s) 736
TaqI TCGA 4 cut(s) 143, 204, 237, 273
TasI AATT 3 cut(s) 269, 564, 626
TfiI GAWTC 5 cut(s) 100, 201, 437, 620, 692
Tru1I TTAA 4 cut(s) 336, 393, 417, 810
Tru9I TTAA 4 cut(s) 336, 393, 417, 810
TscAI CASTG 1 cut(s) 767
TseI GCWGC 1 cut(s) 710
TspDTI ATGAA 6 cut(s) 17, 26, 327, 411, 693, 762
TspRI CASTG 1 cut(s) 767
VspI ATTAAT 1 cut(s) 393
XapI RAATTY 2 cut(s) 564, 626
XcmI CCANNNNNNNNNTGG 1 cut(s) 607
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.