Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

5869601 .. 5871190

Gene Structure 1590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTTATACTTCTCAACGCCTTACTCACTCCCCAAACTTGATATGGTTGCGGTTCCGAAATTTTCTGGTGGAGCCATGGAGAATTATGGTTTGATCACACACTGTGAAAATGGATTGCTTTTTGATCCTTTGCATTCCACAGCAGCAAGAAAGCAAAGAGTGATAGCACATCAATGGTTTGGCAATCTGGTAACAATGGAATGGTGGACTAATTTATGGCTTAACGAGGGTTTTGCAACATGGATAAGTTATATGGCCACTGATATTTTGTTTCCTGAGTGGAAAGTTTGGTCTCAATTTCTTCAACAAACTACTGGCAGACTAATTATGGATGCGCTGGAACATTCACATCCAATTCAGGTAGAGGTACACCATGCACGTTCAGTTCTTGAAATATTCGATACTTTCAGCTATAAAAAGGGATCTGCTGTTATACTAATGATGCAGGCTTATCTTGGTGATGATATATTCCAGTCATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

160

Amino Acids

18.54

Weight (kDa)

5.73

Isoelectric Point (pI)

24.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	3 - 159	1.2e-56	Peptidase family M1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	2 cut(s)	119, 430
AcoI	YGGCCR	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	59
AdeI	CACNNNGTG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	305, 392
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw26I	GTCTC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	119, 430
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	1 cut(s)	143
ApoI	RAATTY	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	470
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	1 cut(s)	155
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	481
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmiI	GGNNCC	2 cut(s)	54, 73
BmsI	GCATC	2 cut(s)	322, 432
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	75
Bse1I	ACTGG	2 cut(s)	319, 472
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	2 cut(s)	337, 349
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	319, 472
BseXI	GCAGC	1 cut(s)	155
BshFI	GGCC	1 cut(s)	257
BsmAI	GTCTC	1 cut(s)	297
BsmI	GAATGC	1 cut(s)	133
BsnI	GGCC	1 cut(s)	257
Bso31I	GGTCTC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	93, 124, 422
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	54, 73
BspPI	GGATC	2 cut(s)	119, 430
BspTNI	GGTCTC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	319, 472
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	93, 124, 422
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	276
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	337, 349
BstHHI	GCGC	1 cut(s)	337
BstKTI	GATC	3 cut(s)	96, 127, 425
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	3 cut(s)	93, 124, 422
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	2 cut(s)	337, 349
BtsIMutI	CAGTG	2 cut(s)	100, 258
Cac8I	GCNNGC	1 cut(s)	447
CfoI	GCGC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	3 cut(s)	76, 240, 374
CviJI	RGCY	5 cut(s)	74, 220, 257, 411, 449
CviKI_1	RGCY	5 cut(s)	74, 220, 257, 411, 449
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	95, 126, 424
DpnII	GATC	3 cut(s)	93, 124, 422
DraIII	CACNNNGTG	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	3 cut(s)	79, 243, 377
FatI	CATG	3 cut(s)	75, 239, 373
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	336, 344
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	1 cut(s)	481
GlaI	GCGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	337
Hin1II	CATG	3 cut(s)	79, 243, 377
Hin6I	GCGC	1 cut(s)	335
HinP1I	GCGC	1 cut(s)	335
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	207, 370
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	275, 389
Hpy8I	GTNNAC	2 cut(s)	207, 370
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4IV	ACGT	1 cut(s)	379
HpyCH4V	TGCA	4 cut(s)	133, 236, 377, 445
HpyF3I	CTNAG	1 cut(s)	276
HpySE526I	ACGT	1 cut(s)	379
Hsp92II	CATG	3 cut(s)	79, 243, 377
HspAI	GCGC	1 cut(s)	335
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	3 cut(s)	93, 124, 422
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	51, 173, 288, 300, 323, 344, 431
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	322, 432
MaeI	CTAG	1 cut(s)	481
MaeII	ACGT	1 cut(s)	379
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	95, 126, 424
MboI	GATC	3 cut(s)	93, 124, 422
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	6 cut(s)	59, 82, 211, 296, 324, 354
MluNI	TGGCCA	1 cut(s)	257
MnlI	CCTC	2 cut(s)	220, 358
Mox20I	TGGCCA	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	257
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	172
Msp20I	TGGCCA	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	133
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	93, 124, 422
NlaIII	CATG	3 cut(s)	79, 243, 377
NlaIV	GGNNCC	2 cut(s)	54, 73
PctI	GAATGC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	54, 73
PsuI	RGATCY	1 cut(s)	422
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	172
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	93, 124, 422
SetI	ASST	4 cut(s)	363, 369, 382, 413
SfaNI	GCATC	2 cut(s)	322, 432
SmiMI	CAYNNNNRTG	1 cut(s)	172
Sse9I	AATT	6 cut(s)	59, 82, 211, 296, 324, 354
SsiI	CCGC	1 cut(s)	50
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	481
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	104
TaiI	ACGT	1 cut(s)	382
TaqI	TCGA	1 cut(s)	399
TasI	AATT	6 cut(s)	59, 82, 211, 296, 324, 354
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TscAI	CASTG	2 cut(s)	107, 265
TseI	GCWGC	1 cut(s)	143
TspRI	CASTG	2 cut(s)	107, 265
XapI	RAATTY	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40
XspI	CTAG	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.