Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

66984178 .. 66989857

Gene Structure 5680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G043770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2595 bp

ATGTCACAGTTCAAAGGCCAATCTCGGCTTCCCAAATTCGCCGTGCCGAAACGCTACGACGTAAGGCTCAGACCCGACCTCGTCGCCTGCCAATTCGTCGGCTCCGTCGCCATCGACCTCGACATCGTCTCCGATACCCGCTTCATCGTCCTCAACGCCGCCGAGCTCTCCGTCAACCCCCCTGCCGTGTCCTTCACTCAACTAGACTCTTCCAAGGTTTTCAAGCCATCGAAAGTTGACGGATTTGAAGATGATGGCATTTTGGTCGTGGAGTTTGAGGAGACGATTCCAGTTGGGCTGGGAGTTTTGGCTATTGGGTTTCAAGGAATTTTGAATGACAAGATGAAGGGATTCTATAGAAGTACATATGAGCATAATGGGGAGAAGAAAAACATGGCTGTTACACAGTTTGAACCGGTTGATGCCAGGCGCTGCTTTCCGTGTTGGGATGAACCTGCTTGCAAGGCTACATTCAAAATTACATTGGAGGATGTACCATCTGAATTGGTAGCTCTTTCCAACATGCCAGTTTCACAAGAAATAGTGAATGGACATCGGAAGACAGTTTCATATCAGGAGACACCAATTATGTCTACATATTTGGTGGCCATTGTTGTTGGATTGTTCGATTACGTTGAAGATCACACTTCTGATGGGGTCAAAGTGAGGGTCTATTGTCAAGTTGGTAAGGAAAACCAAGGGAAATTTGCTTTGCAGGTTGCTGTCAAGACACTTGAATTGTACAAAAAATACTTTGGTGTGCCTTACCCTTTGCCAAAATTGGATATGGTCGCAATCCCTGATTTTTCAGCTGGGGCCATGGAGAATTATGGTTTAGTTACAATAACCGTAGCACATGAATTGGCACACCAGTGGTTTGGCAATCTTGTAACCATGGAATGGTGGACACATTTATGGCTCAATGAGGGATTTGCAACATGGGTGAGCTATTTAGCTACTGAGAGCTTGTTTCCTGAGTGGAAAATATGGACTCAGTTTCTTGATGAATCTACTGAGGGTCTTAAGCTGGATGGTCTTGAAGAATCCCACCCCATCGAGGTGGAGATAAATCATGCTGCTCAGGTTGATGAAATATTTGATGCAATAAGTTATACAAAAGGTGCTTCTGTTATTAGGATGCTACAAAATTATCTTGGTGCTGCACCCTTTGAGAGGTCACTGGCTGCATATGTAAAGAAACATGCTTACTCAAATGCAAAGACAGAAGACTTATGGGCTGCCCTTGAAGAGGGATCTGGTGAACCTGTGAACAAGCTGATGAATTCGTGGACGCAGCAGAAAGGCTACCCAGTTGTTTCTGTCGAAGTCAAAGATCAAAAATTGAAGTTTGATCAGACACAATTCTTGTCAAGTGGTTCCCAAGGCGAAGGAGAATGGATTGTGCCAATAACATTATGCTGTGGCTCGTATGATTTACGCAAGAGCTTCCTACTCAAAACTAAGTCTGAAACTCTTGACATAAAGGAATTTCTAGGTTGTTCAATAGCAGAGACTGAAAGTGGAAGCATGTGCAATAAAAACAATACAGTATGCAGTTGGATAAAAATCAATGTAGATCAAGCTGGTTTTTACAGGGTGAAATATGATGAGAAACTTGCAGCTACACTAAGAAATGCTATACAGAACAAACACTTGTCTGCAACAGACAGATTTGGCATTTTGGATGATTCATATGCCCTTTCTATGGCTCGTCAGCTGTCTTTTGCTTCGTTGCTTACCTTGTTGGCTGCTTACAAAGAGGAACTTGACTATACAGTCCTGTCAAATTTGATTTCTATTAGTCAAAAGCTCGCAAGAATTGCAGCTGATGCAATACCCGAGCTACTTGATCTCATCAATCAGTTCTTTATTGGCCTTCTTCAGTACTCTGCAGAGAAGCTTGGTTGGCAGCCCAAACCCGGTGAGAGCCATTTAGATGCAATGTTGAGAGGGGAAGTTTTGACCACCCTTGCTTTATTTGGACATGACCTGACAATTAATGAAGCAAGGAGGCGTTTTCATGCCTACATAGATGACAGAAATACGCCTCTCCTTCCTCCTGACATTAGAAAGGCAGCATATGTGGCTGTAATGCAAACAGTAACCCAATCAAACAGAGCAGGCTATGACTCTCTTCTTAGAGTTTACAGAGAGAGTGATCAAAGCGAGGAGAAAAACCGCATTTTAGGTTCATTAGCATCCTGTCCAGATCCAGACATTATACTGGAAGTTCTCAACTTTTTGTTGACTTCAGAGGTCCGCAACCAGGATGCTATTTTTGGACTTGCTGTTTGTAGTAAAGGACGGGAAACAGCTTGGACTTGGCTGAAGGATAACTGGGAGAAAATCTCAAAGACCTGGGGTTCTGGATTTCTAATTACTCGCTTTGTCAGTGCAATTGTTTCACCGCTTGCTTCATTTGAGAAGGTTGAGCAAGTAGAGGAGTTCTTCAAAGCCCATCCTAACCCTGCCATAACTAGAACCTTGAAGCAGAGCATTGAGCGAGTACAGATTAACGCCAAGTGGGTTCAGAGTGTTCAGGGTGAGAAAGATCTTCCCAAGGTTTTGAAGGAGTTGGCTTCCAGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

864

Amino Acids

97.19

Weight (kDa)

5.46

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	15 - 201	1.9e-46	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	236 - 282	5e-14	Peptidase family M1 domain
Peptidase_M1	PF01433	282 - 430	3e-58	Peptidase family M1 domain
ERAP1_C	PF11838	520 - 837	6.4e-86	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1775
Acc36I	ACCTGC	2 cut(s)	463, 706
AccB7I	CCANNNNNTGG	1 cut(s)	900
AccI	GTMKAC	1 cut(s)	593
AciI	CCGC	5 cut(s)	139, 159, 2179, 2260, 2408
AclWI	GGATC	2 cut(s)	1261, 2204
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	6 cut(s)	35, 327, 704, 1282, 1487, 1786
AcuI	CTGAAG	3 cut(s)	1865, 2235, 2348
AfaI	GTAC	5 cut(s)	364, 495, 743, 1886, 2508
AfiI	CCNNNNNNNGG	7 cut(s)	900, 1057, 1173, 1249, 1705, 1919, 2266
AflII	CTTAAG	1 cut(s)	1022
AgeI	ACCGGT	1 cut(s)	415
AjnI	CCWGG	4 cut(s)	425, 2265, 2357, 2582
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	871
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	4 cut(s)	133, 275, 572, 1505
AlwI	GGATC	2 cut(s)	1261, 2204
AlwNI	CAGNNNCTG	2 cut(s)	432, 1514
Ama87I	CYCGRG	1 cut(s)	1838
AoxI	GGCC	4 cut(s)	16, 606, 816, 1873
ApoI	RAATTY	6 cut(s)	35, 327, 704, 1282, 1487, 1786
ArsI	GACNNNNNNTTYG	4 cut(s)	654, 686, 2274, 2306
AseI	ATTAAT	1 cut(s)	1998
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	816, 2257
AsuC2I	CCSGG	1 cut(s)	1920
AsuHPI	GGTGA	6 cut(s)	955, 1271, 1609, 1934, 2397, 2555
AvaI	CYCGRG	1 cut(s)	1838
AvaII	GGWCC	1 cut(s)	2257
BalI	TGGCCA	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	566, 1233
Bbv12I	GWGCWC	1 cut(s)	168
BccI	CCATC	8 cut(s)	119, 235, 248, 505, 647, 1025, 1061, 2466
BceAI	ACGGC	2 cut(s)	26, 170
BcgI	CGANNNNNNTGC	2 cut(s)	247, 281
BciT130I	CCWGG	4 cut(s)	427, 2267, 2359, 2584
BclI	TGATCA	2 cut(s)	1351, 2158
BcnI	CCSGG	1 cut(s)	1920
BcoDI	GTCTC	4 cut(s)	133, 275, 572, 1505
BfaI	CTAG	4 cut(s)	203, 1493, 2478, 2593
BfmI	CTRYAG	2 cut(s)	355, 1890
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	2 cut(s)	463, 706
BglII	AGATCT	1 cut(s)	2551
BmcAI	AGTACT	1 cut(s)	1886
Bme1390I	CCNGG	5 cut(s)	427, 1920, 2267, 2359, 2584
Bme18I	GGWCC	1 cut(s)	2257
BmeT110I	CYCGRG	1 cut(s)	1838
BmgT120I	GGNCC	2 cut(s)	816, 2257
BmiI	GGNNCC	3 cut(s)	103, 817, 1378
BmrFI	CCNGG	5 cut(s)	427, 1920, 2267, 2359, 2584
BmrI	ACTGGG	2 cut(s)	1304, 2347
BmsI	GCATC	7 cut(s)	412, 1090, 1128, 1819, 1927, 2207, 2260
BmuI	ACTGGG	2 cut(s)	1304, 2347
BpiI	GAAGAC	2 cut(s)	566, 1233
BplI	GAGNNNNNCTC	2 cut(s)	2333, 2365
Bpu10I	CCTNAGC	1 cut(s)	1080
BpuMI	CCSGG	1 cut(s)	1920
BsaBI	GATNNNNATC	1 cut(s)	1565
BsaJI	CCNNGG	7 cut(s)	213, 697, 819, 894, 1381, 2358, 2559
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	7 cut(s)	900, 1057, 1173, 1249, 1705, 1919, 2266
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	7 cut(s)	290, 527, 871, 1185, 1310, 2229, 2342
Bse3DI	GCAATG	1 cut(s)	1947
Bse8I	GATNNNNATC	1 cut(s)	1565
BseBI	CCWGG	4 cut(s)	427, 2267, 2359, 2584
BseDI	CCNNGG	7 cut(s)	213, 697, 819, 894, 1381, 2358, 2559
BseGI	GGATG	8 cut(s)	454, 496, 1036, 1143, 1690, 2198, 2275, 2458
BseJI	GATNNNNATC	1 cut(s)	1565
BseLI	CCNNNNNNNGG	7 cut(s)	900, 1057, 1173, 1249, 1705, 1919, 2266
BseMI	GCAATG	1 cut(s)	1947
BseMII	CTCAG	6 cut(s)	82, 951, 966, 1005, 1007, 1094
BseNI	ACTGG	7 cut(s)	290, 527, 871, 1185, 1310, 2229, 2342
BseRI	GAGGAG	3 cut(s)	293, 2183, 2456
BseYI	CCCAGC	2 cut(s)	298, 812
BsgI	GTGCAG	1 cut(s)	1146
BshFI	GGCC	4 cut(s)	18, 608, 818, 1875
BshTI	ACCGGT	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	1838
BsiSI	CCGG	2 cut(s)	416, 1920
BslI	CCNNNNNNNGG	7 cut(s)	900, 1057, 1173, 1249, 1705, 1919, 2266
BsmAI	GTCTC	4 cut(s)	133, 275, 572, 1505
BsmBI	CGTCTC	2 cut(s)	133, 275
BsnI	GGCC	4 cut(s)	18, 608, 818, 1875
BsoBI	CYCGRG	1 cut(s)	1838
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
Bsp19I	CCATGG	2 cut(s)	819, 894
BspACI	CCGC	5 cut(s)	139, 159, 2179, 2260, 2408
BspANI	GGCC	4 cut(s)	18, 608, 818, 1875
BspCNI	CTCAG	6 cut(s)	81, 952, 967, 1006, 1006, 1093
BspLI	GGNNCC	3 cut(s)	103, 817, 1378
BspMAI	CTGCAG	1 cut(s)	1894
BspMI	ACCTGC	2 cut(s)	463, 706
BspPI	GGATC	2 cut(s)	1261, 2204
BspTI	CTTAAG	1 cut(s)	1022
BsrDI	GCAATG	1 cut(s)	1947
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	7 cut(s)	290, 527, 871, 1185, 1310, 2229, 2342
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	7 cut(s)	213, 697, 819, 894, 1381, 2358, 2559
BssMI	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
BssT1I	CCWWGG	6 cut(s)	213, 697, 819, 894, 1381, 2559
Bst2UI	CCWGG	4 cut(s)	427, 2267, 2359, 2584
Bst4CI	ACNGT	7 cut(s)	9, 408, 565, 850, 1549, 1777, 2101
Bst6I	CTCTTC	3 cut(s)	214, 1242, 2139
BstAFI	CTTAAG	1 cut(s)	1022
BstAPI	GCANNNNNTGC	2 cut(s)	1820, 1829
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	5 cut(s)	88, 460, 1812, 2122, 2412
BstDEI	CTNAG	9 cut(s)	68, 960, 975, 993, 1014, 1080, 1461, 1628, 2138
BstDSI	CCRYGG	2 cut(s)	819, 894
BstENI	CCTNNNNNAGG	2 cut(s)	1171, 1247
BstF5I	GGATG	8 cut(s)	454, 496, 1036, 1143, 1690, 2198, 2275, 2458
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	9 cut(s)	643, 1256, 1336, 1354, 1579, 1852, 2161, 2212, 2554
BstMAI	GTCTC	4 cut(s)	133, 275, 572, 1505
BstMBI	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 1820, 1829, 1906, 2084
BstNI	CCWGG	4 cut(s)	427, 2267, 2359, 2584
BstNSI	RCATGY	3 cut(s)	526, 1205, 1531
BstSCI	CCNGG	5 cut(s)	425, 1918, 2265, 2357, 2582
BstSFI	CTRYAG	2 cut(s)	355, 1890
BstV2I	GAAGAC	2 cut(s)	566, 1233
BstX2I	RGATCY	3 cut(s)	1253, 2209, 2551
BstXI	CCANNNNNNTGG	2 cut(s)	878, 1060
BstYI	RGATCY	3 cut(s)	1253, 2209, 2551
BsuRI	GGCC	4 cut(s)	18, 608, 818, 1875
BtgI	CCRYGG	2 cut(s)	819, 894
BtsCI	GGATG	8 cut(s)	454, 496, 1036, 1143, 1690, 2198, 2275, 2458
BtsIMutI	CAGTG	3 cut(s)	878, 1178, 2398
BveI	ACCTGC	2 cut(s)	463, 706
Cac8I	GCNNGC	5 cut(s)	88, 460, 1812, 2122, 2412
CaiI	CAGNNNCTG	2 cut(s)	432, 1514
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	816, 2257
CseI	GACGC	1 cut(s)	1300
Csp6I	GTAC	5 cut(s)	363, 494, 742, 1885, 2507
CspAI	ACCGGT	1 cut(s)	415
CviQI	GTAC	5 cut(s)	363, 494, 742, 1885, 2507
DdeI	CTNAG	9 cut(s)	68, 960, 975, 993, 1014, 1080, 1461, 1628, 2138
DpnI	GATC	9 cut(s)	642, 1255, 1335, 1353, 1578, 1851, 2160, 2211, 2553
DpnII	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
DrdI	GACNNNNNNGTC	1 cut(s)	1775
DseDI	GACNNNNNNGTC	1 cut(s)	1775
EaeI	YGGCCR	1 cut(s)	606
Eam1104I	CTCTTC	3 cut(s)	214, 1242, 2139
EarI	CTCTTC	3 cut(s)	214, 1242, 2139
Ecl136II	GAGCTC	1 cut(s)	166
Eco130I	CCWWGG	6 cut(s)	213, 697, 819, 894, 1381, 2559
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	2257
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	3 cut(s)	1865, 2235, 2348
Eco88I	CYCGRG	1 cut(s)	1838
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	2 cut(s)	1171, 1247
EcoRI	GAATTC	1 cut(s)	1282
EcoRII	CCWGG	4 cut(s)	425, 2265, 2357, 2582
EcoT14I	CCWWGG	6 cut(s)	213, 697, 819, 894, 1381, 2559
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	6 cut(s)	213, 697, 819, 894, 1381, 2559
Esp3I	CGTCTC	2 cut(s)	133, 275
FalI	AAGNNNNNCTT	2 cut(s)	1749, 1781
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	4 cut(s)	367, 1189, 1693, 2080
FbaI	TGATCA	2 cut(s)	1351, 2158
FblI	GTMKAC	1 cut(s)	593
FokI	GGATG	8 cut(s)	461, 503, 1043, 1150, 1697, 2185, 2282, 2445
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	4 cut(s)	203, 1493, 2478, 2593
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	2 cut(s)	302, 816
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	4 cut(s)	18, 608, 818, 1875
HapII	CCGG	2 cut(s)	416, 1920
HgaI	GACGC	1 cut(s)	1300
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	3 cut(s)	175, 238, 2247
HindII	GTYRAC	3 cut(s)	175, 238, 2247
HindIII	AAGCTT	1 cut(s)	1898
HinfI	GANTC	8 cut(s)	206, 286, 351, 991, 1007, 1043, 1688, 2129
HpaII	CCGG	2 cut(s)	416, 1920
HphI	GGTGA	6 cut(s)	955, 1271, 1609, 1934, 2397, 2555
Hpy166II	GTNNAC	9 cut(s)	175, 238, 594, 906, 1262, 1270, 1290, 2146, 2247
Hpy188I	TCNGA	9 cut(s)	71, 133, 502, 558, 652, 1356, 1468, 2254, 2532
Hpy8I	GTNNAC	9 cut(s)	175, 238, 594, 906, 1262, 1270, 1290, 2146, 2247
Hpy99I	CGWCG	4 cut(s)	62, 86, 101, 110
HpyAV	CCTTC	8 cut(s)	202, 340, 1382, 1886, 2063, 2323, 2419, 2563
HpyCH4III	ACNGT	7 cut(s)	9, 408, 565, 850, 1549, 1777, 2101
HpyCH4IV	ACGT	2 cut(s)	60, 633
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 1820, 1829, 1906, 2084
HpyF3I	CTNAG	9 cut(s)	68, 960, 975, 993, 1014, 1080, 1461, 1628, 2138
HpySE526I	ACGT	2 cut(s)	60, 633
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	1351, 2158
Kzo9I	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	7 cut(s)	412, 1090, 1128, 1819, 1927, 2207, 2260
MaeI	CTAG	4 cut(s)	203, 1493, 2478, 2593
MaeII	ACGT	2 cut(s)	60, 633
MaeIII	GTNAC	6 cut(s)	3, 400, 838, 889, 1176, 2101
MalI	GATC	9 cut(s)	642, 1255, 1335, 1353, 1578, 1851, 2160, 2211, 2553
MboI	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
MfeI	CAATTG	1 cut(s)	2397
MflI	RGATCY	3 cut(s)	1253, 2209, 2551
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	3 cut(s)	200, 985, 2123
MmeI	TCCRAC	3 cut(s)	543, 598, 1538
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	1023, 1998, 2514
MslI	CAYNNNNRTG	4 cut(s)	871, 913, 1058, 1935
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	3 cut(s)	812, 1717, 1826
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	2 cut(s)	416, 1920
MspR9I	CCNGG	5 cut(s)	427, 1920, 2267, 2359, 2584
MunI	CAATTG	1 cut(s)	2397
MvaI	CCWGG	4 cut(s)	427, 2267, 2359, 2584
MwoI	GCNNNNNNNGC	5 cut(s)	464, 1820, 1829, 1906, 2084
NciI	CCSGG	1 cut(s)	1920
NcoI	CCATGG	2 cut(s)	819, 894
NdeI	CATATG	4 cut(s)	367, 1189, 1693, 2080
NdeII	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
NlaIV	GGNNCC	3 cut(s)	103, 817, 1378
NmeAIII	GCCGAG	2 cut(s)	4, 187
NmuCI	GTSAC	2 cut(s)	3, 1176
NspI	RCATGY	3 cut(s)	526, 1205, 1531
OliI	CACNNNNGTG	1 cut(s)	871
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	286, 351, 1007, 1043, 1688
PflFI	GACNNNGTC	2 cut(s)	80, 125
PflMI	CCANNNNNTGG	1 cut(s)	900
PfoI	TCCNGGA	1 cut(s)	2582
PinAI	ACCGGT	1 cut(s)	415
PleI	GAGTC	3 cut(s)	200, 985, 2123
PpsI	GAGTC	3 cut(s)	200, 985, 2123
PshBI	ATTAAT	1 cut(s)	1998
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	4 cut(s)	425, 2265, 2357, 2582
PspFI	CCCAGC	2 cut(s)	298, 812
PspGI	CCWGG	4 cut(s)	425, 2265, 2357, 2582
PspN4I	GGNNCC	3 cut(s)	103, 817, 1378
PspPI	GGNCC	2 cut(s)	816, 2257
PstI	CTGCAG	1 cut(s)	1894
PstNI	CAGNNNCTG	2 cut(s)	432, 1514
PsuI	RGATCY	3 cut(s)	1253, 2209, 2551
PsyI	GACNNNGTC	2 cut(s)	80, 125
PvuII	CAGCTG	3 cut(s)	812, 1717, 1826
RsaI	GTAC	5 cut(s)	364, 495, 743, 1886, 2508
RsaNI	GTAC	5 cut(s)	363, 494, 742, 1885, 2507
RseI	CAYNNNNRTG	4 cut(s)	871, 913, 1058, 1935
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	1023, 1998, 2514
Sau3AI	GATC	9 cut(s)	640, 1253, 1333, 1351, 1576, 1849, 2158, 2209, 2551
Sau96I	GGNCC	2 cut(s)	816, 2257
ScaI	AGTACT	1 cut(s)	1886
SchI	GAGTC	3 cut(s)	200, 985, 2123
ScrFI	CCNGG	5 cut(s)	427, 1920, 2267, 2359, 2584
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	7 cut(s)	412, 1090, 1128, 1819, 1927, 2207, 2260
SfcI	CTRYAG	2 cut(s)	355, 1890
SinI	GGWCC	1 cut(s)	2257
SmiMI	CAYNNNNRTG	4 cut(s)	871, 913, 1058, 1935
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SsiI	CCGC	5 cut(s)	139, 159, 2179, 2260, 2408
SspI	AATATT	1 cut(s)	1095
SspMI	CTAG	4 cut(s)	203, 1493, 2478, 2593
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	5 cut(s)	425, 1918, 2265, 2357, 2582
StyI	CCWWGG	6 cut(s)	213, 697, 819, 894, 1381, 2559
TaaI	ACNGT	7 cut(s)	9, 408, 565, 850, 1549, 1777, 2101
TaiI	ACGT	2 cut(s)	63, 636
TaqI	TCGA	6 cut(s)	114, 120, 230, 627, 1056, 1323
TatI	WGTACW	4 cut(s)	362, 741, 1884, 2506
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	5 cut(s)	286, 351, 1007, 1043, 1688
Tru1I	TTAA	3 cut(s)	1023, 1998, 2514
Tru9I	TTAA	3 cut(s)	1023, 1998, 2514
TscAI	CASTG	3 cut(s)	878, 1185, 2398
TseFI	GTSAC	2 cut(s)	3, 1176
Tsp45I	GTSAC	2 cut(s)	3, 1176
TspGWI	ACGGA	4 cut(s)	94, 160, 255, 429
TspRI	CASTG	3 cut(s)	878, 1185, 2398
Tth111I	GACNNNGTC	2 cut(s)	80, 125
Van91I	CCANNNNNTGG	1 cut(s)	900
Vha464I	CTTAAG	1 cut(s)	1022
VpaK11BI	GGWCC	1 cut(s)	2257
VspI	ATTAAT	1 cut(s)	1998
XagI	CCTNNNNNAGG	2 cut(s)	1171, 1247
XapI	RAATTY	6 cut(s)	35, 327, 704, 1282, 1487, 1786
XceI	RCATGY	3 cut(s)	526, 1205, 1531
XmiI	GTMKAC	1 cut(s)	593
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	4 cut(s)	203, 1493, 2478, 2593
ZrmI	AGTACT	1 cut(s)	1886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.