Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005789.1

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

7737 .. 15888

Gene Structure 8152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005789.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4422 bp

atggcgtcttcctctctcttccaatccccctccttctctctcaaaccccagaaacccatttccccaccctccaccagaccccatttcaccaccaccatcaaatgctcctcctcctcctccgccgccaaatgccgcgacaacatccgcgacgacgcccaccgccacaacaccacccacacccaccacttctccgccaagtacgtccccttcaactcctccgcagacgacacgtcgtccgagtcctactccctcgacgaggtcgtctaccgctcccagtccggcggcctcctcgacgtccagcacgacatggccgccctcaagaactacgacggcaagtactggcgcgacctcttcgactcccgcgtcggcaaaaccacctggccctacggctccggcgtctggtccaagaaggagtgggtcctccctgagatcgacagcgacgacatcgtctccgccttcgagggcaactccaacctcttctgggccgagcgctacggcaaaacagtcctcggcatgaacgagctctgggtcaagcactgcggcatcagccacaccggctccttcaaggacctaggcatgaccgtcctcgtcagccaggtcaatcgcctccgcaaaatgaaccgccccgtcgtcggagtcggatgcgcctccaccggcgacacctccgccgccttgtccgcctactgcgcctccgccgggatcccctccattgtgtttctgccggcgaataagatctcgatggcccagctggtccagcccatcgcaaacggggcctttgtgctgagcatcgacaccgatttcgatggctgtatgaatctgattcgagaagtgactgcagaattgcctatttatttagctaattctctgaacagtttgagactggagggccagaaaacagctgctattgagattctgcagcagtttgattggcaggtcccggattgggttatagttccgggaggcaatctcggaaatatatatgcattctacaaagggtttcatatgtgtaaggagttggggctggttgataagattcctagacttgtgtgtgctcaagctgcaaatgcaaaccctttgtacttgcattacaagtcggggtgggatgaggagttcaagcctgtgaaggcaaacactacgtttgcgtctgcaattcagattggggatcctgtttccattgacagggccgtgtatgcgctgaagaagtcggatgggattgtggaggaggcgaccgaggaggagttgatggatgcaatggcgcaagcggattctaccggcatgtttatatgtcctcacactggtgtggcgctggcggcgttgatcaagctccggaataagggggttataggccccactgagaggactgtggtggtgagcacggctcatgggttgaagttcacgcaggcgaagattgattatcactccaaggagattccggatttggcttgccggtttgctaacccaccggttcaagtgagggcagattttgggtcggttatggatgttttgaagaagtacttgagagaaacttctgactgcttccttgcttgcttaattgctggaagagcagtgaaatcgttagccccttccccaaggccagctgaggccttggaaacggaggcaatttacctagcaagctcttttcccaatgtagacattgtcatatcctcagattctcaaggtctcatcgatgctatgaagaagcacttatctgtttcagattggaaagcctcaacaatcctccctcattcaagtccgctacatagagatatggaacagaagcaaaccatagagcaatttaaaggccaagcaaggttaccgaattttgcaatcccgaaacgctatgatcttcatctcaaacttgatctctctgcctgcaccttctccggcaccgtgcagattaacgttagcatcgttgaagagaccaagtttcttgtcttgaacgctcttgaacttgatgttcatcaagtttggttcaccaactctcacggccaaaagtaccacccctgcgatgttgttttggatggagatgatgaagttcttgttttggtatttgataaagcacttggtattggtgagggagtcttgggggttgacttttctgcagtccttaatgcgcacttggtggggttatataaatgtgcttatatggatggggaagagaaaaagaatatggctgttactcaattcgaagctgtggatgcgaggaggtgctttccatgttgggatgaacctgctctcaaggctagattcaagatagcattagatgtaccatcagagctgacagctttatccaatatgcctattattaatgagaagtgtgatggagatgttaagactgtgtcttttgaggaatctccaatcatgtcaacttatttggtggctgttgttgttggcctatttgatcatattgaagatacaacatctgatggggtaaaggttcgtgcatattgccctgttgggaagagtgataaaggggaatttgcgttaaatgttgctgttaagacccttgatcttttctccaaatacttctcaacgccttactcactccccaaacttgatatggttgcggttcctgaattttccggtggggccatggagaattatggtttgatcacataccgtgaaactgaactgctttttgatcctttgcattccacagcagcaagaaagcaaagaatggcaattgttgtatcacatgaagtagcacatcagtggtttggcaatctggtaacaatggaatggtggactgatttatggcttaacgagggttttgcaacatggataagttatatggccactgatattttgtttcctgagtggaaagtttggtctcaatttcttcaatatactactggtggcctaattatggatgccctggaacaatcacatccaattcaggtagaggtacaccacgcacgttcagttcttgaaatattcgatgctatcagttatgaaaagggatctgctgttatacgaatgctgcaggcttatcttggtgatgatatattccagaaatcgttaagttcctacataaaaagatattctgaaaaaaatgcaaagacagaagatttatggagtgttctgtcggaggaatctggtgtcaaaatcagtgaaatgatggatgattggactaagaaacaaggatatcctgtgatctctgtaacagcaaaggatcatattttggaatttgagcagacacagtttctgtcagcaggtttgcttagtgaagggaaatggattgttccagtaactatttcactcggttcatatgagagacgcaagaatttccttttggaaacaaagtccagtgaagtggacatatcagatcttgttgacacttctgatactaatttaaagaataaagagacatgtgatgaacaactgtgggtcaaggttaatatcgagcagagtggtttttatagggtaaaatatgaagataagctagcagctcgacttaggaaggctattgagcataatagcttggaagcaacagacaaatttggtattctggatgatgcatacgccctttgcgaagcttgtgaacagtcactatcatctttgctttccttgatggatgtatacagaaaagaagctgattatattgtcttatcaaaacttatagacgtatgttataacattgttaaagtatcaagcgaggccatccctgattcagtgaatgagttgaagcaattttgcatcaatctcctcatgtttccatcagaaaaattaggctgggaaccagtacctggagagagtcacttcagtacacttttgagagcagaagtcttgcaggccttggttacatttggccatgatataactcagaatgaagcattagatcgatttcagaaattattgaatgatagaaacactccgcttcttactgcagatacaagagcggctgcttacattgcaatgatgaggaatgctggcagctcacacaaggaaggctttgaatcactattaaatgtttacagagaagctggtacagtgcaagagaaggaacgaattctacgttattttgcgtcttctccagacccagatacagttgttgatgttttgaactttttcttatctgatgaggttcgagatcaggacattatatttgcactccctggtataagcttagaatgccgtgaaacagcatggaaatggacgaaggagaactgggacctgatcctcaccaagtatggtgctggattgctactcacccgtttcataagagacgttgtaacaccgttttgtagcaatgaaaaggctgatgaggttgaagaatttttctcaagccgggggcatccttccattgctatgactctgaagcaaagcattgagcacgtccgaatcaaggcgaggtgggttcaaagcgcaaggcaggagcaatctcttcaagaactagtcaaagagttggcaggcaagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

1473

Amino Acids

164.64

Weight (kDa)

5.37

Isoelectric Point (pI)

37.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3633
AasI	GACNNNNNNGTC	3 cut(s)	260, 362, 446
AatII	GACGTC	1 cut(s)	297
Acc16I	TGCGCA	1 cut(s)	2115
Acc36I	ACCTGC	3 cut(s)	922, 2239, 3203
AccB1I	GGYRCC	1 cut(s)	1886
AccB7I	CCANNNNNTGG	1 cut(s)	3746
AccBSI	CCGCTC	2 cut(s)	270, 3899
AccI	GTMKAC	3 cut(s)	264, 1650, 3579
AccII	CGCG	4 cut(s)	135, 147, 345, 363
AccIII	TCCGGA	2 cut(s)	1326, 1432
AclI	AACGTT	1 cut(s)	1902
AclWI	GGATC	8 cut(s)	694, 707, 1157, 1170, 2636, 2968, 3180, 4171
AcoI	YGGCCR	4 cut(s)	309, 1987, 2793, 3808
AcsI	RAATTY	8 cut(s)	1819, 2477, 2576, 3185, 3283, 3497, 4008, 4274
AcuI	CTGAAG	3 cut(s)	1217, 3745, 4337
AcyI	GRCGYC	4 cut(s)	5, 153, 294, 396
AdeI	CACNNNGTG	1 cut(s)	2122
AfeI	AGCGCT	1 cut(s)	491
AflIII	ACRYGT	2 cut(s)	228, 3368
AgeI	ACCGGT	1 cut(s)	1462
AhdI	GACNNNNNGTC	2 cut(s)	229, 232
AhlI	ACTAGT	1 cut(s)	4393
AjiI	CACGTC	2 cut(s)	231, 4336
AjnI	CCWGG	5 cut(s)	377, 594, 2874, 3745, 4114
AjuI	GAANNNNNNNTTGG	2 cut(s)	3275, 3307
AleI	CACNNNNGTG	3 cut(s)	1296, 1298, 2710
AloI	GAACNNNNNNTCC	2 cut(s)	1094, 1126
Alw21I	GWGCWC	4 cut(s)	525, 1054, 1376, 4335
Alw26I	GTCTC	8 cut(s)	454, 871, 1685, 1913, 2835, 3268, 3359, 4218
AlwI	GGATC	8 cut(s)	694, 707, 1157, 1170, 2636, 2968, 3180, 4171
AlwNI	CAGNNNCTG	2 cut(s)	3205, 3746
Aor13HI	TCCGGA	2 cut(s)	1326, 1432
Aor51HI	AGCGCT	1 cut(s)	491
ApeKI	GCWGC	8 cut(s)	899, 916, 1058, 2660, 2980, 3446, 3902, 3933
ApoI	RAATTY	8 cut(s)	1819, 2477, 2576, 3185, 3283, 3497, 4008, 4274
ArsI	GACNNNNNNTTYG	4 cut(s)	782, 814, 4088, 4120
AseI	ATTAAT	1 cut(s)	2307
AsiGI	ACCGGT	1 cut(s)	1462
Asp700I	GAANNNNTTC	2 cut(s)	4008, 4067
AspA2I	CCTAGG	1 cut(s)	571
AspLEI	GCGC	9 cut(s)	345, 492, 647, 689, 1195, 1258, 1306, 2116, 4367
AsuC2I	CCSGG	4 cut(s)	697, 938, 957, 4289
AsuHPI	GGTGA	7 cut(s)	79, 1381, 1966, 2084, 3008, 4174, 4201
AsuII	TTCGAA	1 cut(s)	2187
AsuNHI	GCTAGC	1 cut(s)	3442
AvaII	GGWCC	6 cut(s)	402, 418, 568, 751, 934, 4171
AvrII	CCTAGG	1 cut(s)	571
BaeI	ACNNNNGTAYC	2 cut(s)	4035, 4068
BalI	TGGCCA	2 cut(s)	2795, 3810
BamHI	GGATCC	2 cut(s)	699, 1162
BanI	GGYRCC	1 cut(s)	1886
BanII	GRGCYC	1 cut(s)	525
BarI	GAAGNNNNNNTAC	2 cut(s)	191, 223
BbsI	GAAGAC	1 cut(s)	4020
Bbv12I	GWGCWC	4 cut(s)	525, 1054, 1376, 4335
BbvCI	CCTCAGC	1 cut(s)	1599
BbvI	GCAGC	8 cut(s)	886, 928, 1045, 2672, 2967, 3458, 3889, 3945
BceAI	ACGGC	7 cut(s)	346, 403, 511, 1169, 1392, 2002, 4119
BcgI	CGANNNNNNTGC	4 cut(s)	1554, 1588, 2753, 2787
BciT130I	CCWGG	5 cut(s)	379, 596, 2876, 3747, 4116
BclI	TGATCA	3 cut(s)	1317, 2401, 2610
BcnI	CCSGG	4 cut(s)	697, 938, 957, 4289
BcoDI	GTCTC	8 cut(s)	454, 871, 1685, 1913, 2835, 3268, 3359, 4218
BcuI	ACTAGT	1 cut(s)	4393
BfaI	CTAG	6 cut(s)	572, 1038, 1628, 2244, 3443, 4394
BfmI	CTRYAG	5 cut(s)	834, 914, 2100, 2981, 3885
BfoI	RGCGCY	2 cut(s)	493, 1307
BfuAI	ACCTGC	3 cut(s)	922, 2239, 3203
BglI	GCCNNNNNGGC	1 cut(s)	555
BglII	AGATCT	2 cut(s)	732, 3325
BlnI	CCTAGG	1 cut(s)	571
BlpI	GCTNAGC	1 cut(s)	782
BmcAI	AGTACT	2 cut(s)	338, 1514
Bme1390I	CCNGG	9 cut(s)	379, 596, 697, 938, 957, 2876, 3747, 4116, 4289
Bme18I	GGWCC	6 cut(s)	402, 418, 568, 751, 934, 4171
BmeRI	GACNNNNNGTC	2 cut(s)	229, 232
BmgBI	CACGTC	2 cut(s)	231, 4336
BmrFI	CCNGG	9 cut(s)	379, 596, 697, 938, 957, 2876, 3747, 4116, 4289
BmrI	ACTGGG	2 cut(s)	268, 4177
BmtI	GCTAGC	1 cut(s)	3446
BmuI	ACTGGG	2 cut(s)	268, 4177
BpiI	GAAGAC	1 cut(s)	4020
BplI	GAGNNNNNCTC	8 cut(s)	230, 262, 452, 484, 951, 983, 1363, 1395
BpmI	CTGGAG	3 cut(s)	902, 3768, 4017
Bpu10I	CCTNAGC	1 cut(s)	1599
Bpu1102I	GCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	2187
BpuEI	CTTGAG	6 cut(s)	302, 1038, 1537, 1659, 2222, 4267
BpuMI	CCSGG	4 cut(s)	697, 938, 957, 4289
Bsa29I	ATCGAT	2 cut(s)	1686, 3841
BsaBI	GATNNNNATC	2 cut(s)	1848, 1959
BsaHI	GRCGYC	4 cut(s)	5, 153, 294, 396
BsaI	GGTCTC	3 cut(s)	1685, 1913, 2835
BsaWI	WCCGGW	4 cut(s)	1326, 1432, 1462, 2582
BsaXI	ACNNNNNCTCC	8 cut(s)	173, 203, 434, 464, 542, 572, 674, 704
Bse118I	RCCGGY	6 cut(s)	554, 653, 721, 1271, 1446, 1462
Bse1I	ACTGG	9 cut(s)	274, 344, 885, 1300, 2857, 3245, 3306, 3740, 4172
Bse3DI	GCAATG	5 cut(s)	1257, 3909, 3921, 4255, 4302
Bse8I	GATNNNNATC	2 cut(s)	1848, 1959
BseAI	TCCGGA	2 cut(s)	1326, 1432
BseBI	CCWGG	5 cut(s)	379, 596, 2876, 3747, 4116
BseCI	ATCGAT	2 cut(s)	1686, 3841
BseJI	GATNNNNATC	2 cut(s)	1848, 1959
BseMI	GCAATG	5 cut(s)	1257, 3909, 3921, 4255, 4302
BseMII	CTCAG	7 cut(s)	417, 773, 1344, 1590, 1680, 2805, 3836
BseNI	ACTGG	9 cut(s)	274, 344, 885, 1300, 2857, 3245, 3306, 3740, 4172
BseXI	GCAGC	8 cut(s)	886, 928, 1045, 2672, 2967, 3458, 3889, 3945
BseYI	CCCAGC	2 cut(s)	744, 3732
BsgI	GTGCAG	2 cut(s)	1858, 1913
Bsh1236I	CGCG	4 cut(s)	135, 147, 345, 363
Bsh1285I	CGRYCG	1 cut(s)	1230
BshNI	GGYRCC	1 cut(s)	1886
BshTI	ACCGGT	1 cut(s)	1462
BshVI	ATCGAT	2 cut(s)	1686, 3841
BsiEI	CGRYCG	1 cut(s)	1230
BsiHKAI	GWGCWC	4 cut(s)	525, 1054, 1376, 4335
BslFI	GGGAC	3 cut(s)	188, 920, 4184
BsmAI	GTCTC	8 cut(s)	454, 871, 1685, 1913, 2835, 3268, 3359, 4218
BsmBI	CGTCTC	3 cut(s)	454, 3268, 4218
BsmFI	GGGAC	3 cut(s)	188, 920, 4184
BsmI	GAATGC	5 cut(s)	983, 2650, 2982, 3931, 4136
Bso31I	GGTCTC	3 cut(s)	1685, 1913, 2835
Bsp119I	TTCGAA	1 cut(s)	2187
Bsp1286I	GDGCHC	4 cut(s)	525, 1054, 1376, 4335
Bsp13I	TCCGGA	2 cut(s)	1326, 1432
Bsp1720I	GCTNAGC	1 cut(s)	782
Bsp19I	CCATGG	1 cut(s)	2592
BspCNI	CTCAG	7 cut(s)	418, 774, 1345, 1591, 1679, 2806, 3835
BspDI	ATCGAT	2 cut(s)	1686, 3841
BspEI	TCCGGA	2 cut(s)	1326, 1432
BspFNI	CGCG	4 cut(s)	135, 147, 345, 363
BspMAI	CTGCAG	5 cut(s)	838, 918, 2104, 2985, 3889
BspMI	ACCTGC	3 cut(s)	922, 2239, 3203
BspOI	GCTAGC	1 cut(s)	3446
BspPI	GGATC	8 cut(s)	694, 707, 1157, 1170, 2636, 2968, 3180, 4171
BspQI	GCTCTTC	1 cut(s)	1555
BspT104I	TTCGAA	1 cut(s)	2187
BspT107I	GGYRCC	1 cut(s)	1886
BspTNI	GGTCTC	3 cut(s)	1685, 1913, 2835
BsrBI	CCGCTC	2 cut(s)	270, 3899
BsrDI	GCAATG	5 cut(s)	1257, 3909, 3921, 4255, 4302
BsrFI	RCCGGY	6 cut(s)	554, 653, 721, 1271, 1446, 1462
BsrI	ACTGG	9 cut(s)	274, 344, 885, 1300, 2857, 3245, 3306, 3740, 4172
BssAI	RCCGGY	6 cut(s)	554, 653, 721, 1271, 1446, 1462
BssNAI	GTATAC	1 cut(s)	3580
BssNI	GRCGYC	4 cut(s)	5, 153, 294, 396
BssT1I	CCWWGG	6 cut(s)	571, 1422, 1589, 1605, 2592, 3795
Bst1107I	GTATAC	1 cut(s)	3580
Bst2UI	CCWGG	5 cut(s)	379, 596, 2876, 3747, 4116
Bst6I	CTCTTC	8 cut(s)	23, 356, 482, 1555, 1911, 2151, 2456, 4389
BstACI	GRCGYC	4 cut(s)	5, 153, 294, 396
BstBI	TTCGAA	1 cut(s)	2187
BstDSI	CCRYGG	1 cut(s)	2592
BstEII	GGTNACC	1 cut(s)	1812
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstFNI	CGCG	4 cut(s)	135, 147, 345, 363
BstH2I	RGCGCY	2 cut(s)	493, 1307
BstHHI	GCGC	9 cut(s)	345, 492, 647, 689, 1195, 1258, 1306, 2116, 4367
BstMAI	GTCTC	8 cut(s)	454, 871, 1685, 1913, 2835, 3268, 3359, 4218
BstMCI	CGRYCG	1 cut(s)	1230
BstNI	CCWGG	5 cut(s)	379, 596, 2876, 3747, 4116
BstNSI	RCATGY	2 cut(s)	1279, 3372
BstPI	GGTNACC	1 cut(s)	1812
BstSCI	CCNGG	9 cut(s)	377, 594, 695, 936, 955, 2874, 3745, 4114, 4287
BstSFI	CTRYAG	5 cut(s)	834, 914, 2100, 2981, 3885
BstUI	CGCG	4 cut(s)	135, 147, 345, 363
BstV1I	GCAGC	8 cut(s)	886, 928, 1045, 2672, 2967, 3458, 3889, 3945
BstV2I	GAAGAC	1 cut(s)	4020
BstX2I	RGATCY	5 cut(s)	699, 732, 1162, 2960, 3325
BstXI	CCANNNNNNTGG	1 cut(s)	3313
BstYI	RGATCY	5 cut(s)	699, 732, 1162, 2960, 3325
BstZ17I	GTATAC	1 cut(s)	3580
Bsu15I	ATCGAT	2 cut(s)	1686, 3841
BsuTUI	ATCGAT	2 cut(s)	1686, 3841
BtgI	CCRYGG	1 cut(s)	2592
BtgZI	GCGATG	2 cut(s)	745, 2022
BtrI	CACGTC	2 cut(s)	231, 4336
BtsI	GCAGTG	2 cut(s)	535, 1572
BveI	ACCTGC	3 cut(s)	922, 2239, 3203
CaiI	CAGNNNCTG	2 cut(s)	3205, 3746
CfoI	GCGC	9 cut(s)	345, 492, 647, 689, 1195, 1258, 1306, 2116, 4367
Cfr10I	RCCGGY	6 cut(s)	554, 653, 721, 1271, 1446, 1462
ClaI	ATCGAT	2 cut(s)	1686, 3841
CseI	GACGC	6 cut(s)	161, 352, 385, 1131, 3285, 4014
CspAI	ACCGGT	1 cut(s)	1462
DraI	TTTAAA	2 cut(s)	1798, 3354
DraIII	CACNNNGTG	1 cut(s)	2122
DrdI	GACNNNNNNGTC	3 cut(s)	260, 362, 446
DriI	GACNNNNNGTC	2 cut(s)	229, 232
DseDI	GACNNNNNNGTC	3 cut(s)	260, 362, 446
EaeI	YGGCCR	4 cut(s)	309, 1987, 2793, 3808
Eam1104I	CTCTTC	8 cut(s)	23, 356, 482, 1555, 1911, 2151, 2456, 4389
Eam1105I	GACNNNNNGTC	2 cut(s)	229, 232
EarI	CTCTTC	8 cut(s)	23, 356, 482, 1555, 1911, 2151, 2456, 4389
EciI	GGCGGA	6 cut(s)	109, 181, 442, 655, 667, 682
Ecl136II	GAGCTC	1 cut(s)	523
Eco130I	CCWWGG	6 cut(s)	571, 1422, 1589, 1605, 2592, 3795
Eco147I	AGGCCT	2 cut(s)	1604, 3794
Eco24I	GRGCYC	1 cut(s)	525
Eco31I	GGTCTC	3 cut(s)	1685, 1913, 2835
Eco32I	GATATC	1 cut(s)	3146
Eco47I	GGWCC	6 cut(s)	402, 418, 568, 751, 934, 4171
Eco47III	AGCGCT	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	523
Eco57I	CTGAAG	3 cut(s)	1217, 3745, 4337
Eco91I	GGTNACC	1 cut(s)	1812
EcoICRI	GAGCTC	1 cut(s)	523
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoO109I	RGGNCCY	6 cut(s)	418, 568, 771, 934, 1346, 4171
EcoO65I	GGTNACC	1 cut(s)	1812
EcoRI	GAATTC	1 cut(s)	4008
EcoRII	CCWGG	5 cut(s)	377, 594, 2874, 3745, 4114
EcoRV	GATATC	1 cut(s)	3146
EcoT14I	CCWWGG	6 cut(s)	571, 1422, 1589, 1605, 2592, 3795
EcoT22I	ATGCAT	2 cut(s)	985, 3520
EcoT38I	GRGCYC	1 cut(s)	525
ErhI	CCWWGG	6 cut(s)	571, 1422, 1589, 1605, 2592, 3795
Esp3I	CGTCTC	3 cut(s)	454, 3268, 4218
FalI	AAGNNNNNCTT	6 cut(s)	1499, 1531, 1688, 1720, 3935, 3967
FaqI	GGGAC	3 cut(s)	188, 920, 4184
FauI	CCCGC	1 cut(s)	368
FauNDI	CATATG	2 cut(s)	1002, 3268
FbaI	TGATCA	3 cut(s)	1317, 2401, 2610
FblI	GTMKAC	3 cut(s)	264, 1650, 3579
FriOI	GRGCYC	1 cut(s)	525
FspAI	RTGCGCAY	1 cut(s)	2115
FspBI	CTAG	6 cut(s)	572, 1038, 1628, 2244, 3443, 4394
FspI	TGCGCA	1 cut(s)	2115
GlaI	GCGC	9 cut(s)	344, 491, 646, 688, 1194, 1257, 1305, 2115, 4366
GsaI	CCCAGC	2 cut(s)	748, 3736
GsuI	CTGGAG	3 cut(s)	902, 3768, 4017
HaeII	RGCGCY	2 cut(s)	493, 1307
HgaI	GACGC	6 cut(s)	161, 352, 385, 1131, 3285, 4014
HhaI	GCGC	9 cut(s)	345, 492, 647, 689, 1195, 1258, 1306, 2116, 4367
Hin1I	GRCGYC	4 cut(s)	5, 153, 294, 396
Hin6I	GCGC	9 cut(s)	343, 490, 645, 687, 1193, 1256, 1304, 2114, 4365
HinP1I	GCGC	9 cut(s)	343, 490, 645, 687, 1193, 1256, 1304, 2114, 4365
HincII	GTYRAC	3 cut(s)	2092, 2367, 3334
HindII	GTYRAC	3 cut(s)	2092, 2367, 3334
HindIII	AAGCTT	2 cut(s)	3534, 4123
HphI	GGTGA	7 cut(s)	79, 1381, 1966, 2084, 3008, 4174, 4201
Hsp92I	GRCGYC	4 cut(s)	5, 153, 294, 396
HspAI	GCGC	9 cut(s)	343, 490, 645, 687, 1193, 1256, 1304, 2114, 4365
Kpn2I	TCCGGA	2 cut(s)	1326, 1432
KroI	GCCGGC	1 cut(s)	721
KroNI	GCCGGC	1 cut(s)	723
Ksp22I	TGATCA	3 cut(s)	1317, 2401, 2610
LguI	GCTCTTC	1 cut(s)	1555
LmnI	GCTCC	6 cut(s)	110, 275, 395, 563, 1329, 4375
Lsp1109I	GCAGC	8 cut(s)	886, 928, 1045, 2672, 2967, 3458, 3889, 3945
MaeI	CTAG	6 cut(s)	572, 1038, 1628, 2244, 3443, 4394
MbiI	CCGCTC	2 cut(s)	270, 3899
MfeI	CAATTG	1 cut(s)	2682
MflI	RGATCY	5 cut(s)	699, 732, 1162, 2960, 3325
MhlI	GDGCHC	4 cut(s)	525, 1054, 1376, 4335
MlsI	TGGCCA	2 cut(s)	2795, 3810
MluNI	TGGCCA	2 cut(s)	2795, 3810
MlyI	GAGTC	6 cut(s)	248, 350, 645, 2088, 3763, 4306
MmeI	TCCRAC	5 cut(s)	495, 613, 619, 1185, 3066
Mox20I	TGGCCA	2 cut(s)	2795, 3810
Mph1103I	ATGCAT	2 cut(s)	985, 3520
MroI	TCCGGA	2 cut(s)	1326, 1432
MroNI	GCCGGC	1 cut(s)	721
MroXI	GAANNNNTTC	2 cut(s)	4008, 4067
MscI	TGGCCA	2 cut(s)	2795, 3810
MslI	CAYNNNNRTG	6 cut(s)	1296, 1298, 2710, 3914, 4150, 4307
Msp20I	TGGCCA	2 cut(s)	2795, 3810
MspA1I	CMGCKG	3 cut(s)	748, 899, 1598
MspR9I	CCNGG	9 cut(s)	379, 596, 697, 938, 957, 2876, 3747, 4116, 4289
MunI	CAATTG	1 cut(s)	2682
Mva1269I	GAATGC	5 cut(s)	983, 2650, 2982, 3931, 4136
MvaI	CCWGG	5 cut(s)	379, 596, 2876, 3747, 4116
MvnI	CGCG	4 cut(s)	135, 147, 345, 363
NaeI	GCCGGC	1 cut(s)	723
NciI	CCSGG	4 cut(s)	697, 938, 957, 4289
NcoI	CCATGG	1 cut(s)	2592
NdeI	CATATG	2 cut(s)	1002, 3268
NgoMIV	GCCGGC	1 cut(s)	721
NheI	GCTAGC	1 cut(s)	3442
NmeAIII	GCCGAG	2 cut(s)	489, 511
NmuCI	GTSAC	3 cut(s)	829, 3546, 3755
NsbI	TGCGCA	1 cut(s)	2115
NsiI	ATGCAT	2 cut(s)	985, 3520
NspI	RCATGY	2 cut(s)	1279, 3372
NspV	TTCGAA	1 cut(s)	2187
OliI	CACNNNNGTG	3 cut(s)	1296, 1298, 2710
PceI	AGGCCT	2 cut(s)	1604, 3794
PciI	ACATGT	1 cut(s)	3368
PciSI	GCTCTTC	1 cut(s)	1555
PcsI	WCGNNNNNNNCGW	9 cut(s)	258, 300, 360, 393, 438, 516, 1908, 3528, 4012
PctI	GAATGC	5 cut(s)	983, 2650, 2982, 3931, 4136
PdiI	GCCGGC	1 cut(s)	723
PdmI	GAANNNNTTC	2 cut(s)	4008, 4067
PflFI	GACNNNGTC	4 cut(s)	257, 446, 1655, 2338
PflMI	CCANNNNNTGG	1 cut(s)	3746
PfoI	TCCNGGA	2 cut(s)	936, 955
PinAI	ACCGGT	1 cut(s)	1462
PleI	GAGTC	6 cut(s)	247, 350, 644, 2087, 3762, 4306
PpsI	GAGTC	6 cut(s)	247, 350, 644, 2087, 3762, 4306
PpuMI	RGGWCCY	4 cut(s)	418, 568, 934, 4171
PscI	ACATGT	1 cut(s)	3368
PshBI	ATTAAT	1 cut(s)	2307
PsiI	TTATAA	1 cut(s)	3633
Psp124BI	GAGCTC	1 cut(s)	525
Psp1406I	AACGTT	1 cut(s)	1902
Psp5II	RGGWCCY	4 cut(s)	418, 568, 934, 4171
Psp6I	CCWGG	5 cut(s)	377, 594, 2874, 3745, 4114
PspEI	GGTNACC	1 cut(s)	1812
PspFI	CCCAGC	2 cut(s)	744, 3732
PspGI	CCWGG	5 cut(s)	377, 594, 2874, 3745, 4114
PspPPI	RGGWCCY	4 cut(s)	418, 568, 934, 4171
PsrI	GAACNNNNNNTAC	2 cut(s)	3996, 4028
PstI	CTGCAG	5 cut(s)	838, 918, 2104, 2985, 3889
PstNI	CAGNNNCTG	2 cut(s)	3205, 3746
PsuI	RGATCY	5 cut(s)	699, 732, 1162, 2960, 3325
PsyI	GACNNNGTC	4 cut(s)	257, 446, 1655, 2338
PvuII	CAGCTG	3 cut(s)	748, 899, 1598
RseI	CAYNNNNRTG	6 cut(s)	1296, 1298, 2710, 3914, 4150, 4307
SacI	GAGCTC	1 cut(s)	525
SapI	GCTCTTC	1 cut(s)	1555
ScaI	AGTACT	2 cut(s)	338, 1514
SchI	GAGTC	6 cut(s)	248, 350, 645, 2088, 3763, 4306
ScrFI	CCNGG	9 cut(s)	379, 596, 697, 938, 957, 2876, 3747, 4116, 4289
SduI	GDGCHC	4 cut(s)	525, 1054, 1376, 4335
SfcI	CTRYAG	5 cut(s)	834, 914, 2100, 2981, 3885
SfuI	TTCGAA	1 cut(s)	2187
SgrAI	CRCCGGYG	1 cut(s)	653
SinI	GGWCC	6 cut(s)	402, 418, 568, 751, 934, 4171
SmiMI	CAYNNNNRTG	6 cut(s)	1296, 1298, 2710, 3914, 4150, 4307
SmlI	CTYRAG	6 cut(s)	317, 1053, 1516, 1674, 2237, 4282
SmoI	CTYRAG	6 cut(s)	317, 1053, 1516, 1674, 2237, 4282
SpeI	ACTAGT	1 cut(s)	4393
SseBI	AGGCCT	2 cut(s)	1604, 3794
SspI	AATATT	1 cut(s)	2934
SspMI	CTAG	6 cut(s)	572, 1038, 1628, 2244, 3443, 4394
SstI	GAGCTC	1 cut(s)	525
StuI	AGGCCT	2 cut(s)	1604, 3794
StyD4I	CCNGG	9 cut(s)	377, 594, 695, 936, 955, 2874, 3745, 4114, 4287
StyI	CCWWGG	6 cut(s)	571, 1422, 1589, 1605, 2592, 3795
TaqII	GACCGA	1 cut(s)	1244
TatI	WGTACW	4 cut(s)	336, 1077, 1512, 3764
TauI	GCSGC	8 cut(s)	125, 135, 285, 314, 543, 671, 1313, 3902
TseFI	GTSAC	3 cut(s)	829, 3546, 3755
TseI	GCWGC	8 cut(s)	899, 916, 1058, 2660, 2980, 3446, 3902, 3933
Tsp45I	GTSAC	3 cut(s)	829, 3546, 3755
TspGWI	ACGGA	1 cut(s)	1628
Tth111I	GACNNNGTC	4 cut(s)	257, 446, 1655, 2338
Van91I	CCANNNNNTGG	1 cut(s)	3746
VpaK11BI	GGWCC	6 cut(s)	402, 418, 568, 751, 934, 4171
VspI	ATTAAT	1 cut(s)	2307
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	8 cut(s)	1819, 2477, 2576, 3185, 3283, 3497, 4008, 4274
XceI	RCATGY	2 cut(s)	1279, 3372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2557
XmaJI	CCTAGG	1 cut(s)	571
XmiI	GTMKAC	3 cut(s)	264, 1650, 3579
XmnI	GAANNNNTTC	2 cut(s)	4008, 4067
XspI	CTAG	6 cut(s)	572, 1038, 1628, 2244, 3443, 4394
ZraI	GACGTC	1 cut(s)	295
ZrmI	AGTACT	2 cut(s)	338, 1514
Zsp2I	ATGCAT	2 cut(s)	985, 3520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.