RchiOBHm_Chr2g0144571

Aminopeptidase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
62151235 .. 62155205
3971 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51450

Sequence Viewer

Length: 1980 bp
ATGGAACAGAAGCAAGGCATAGAGCAATTTAAAGGCCAAGCAAGGTTACCGAATTTTGCAATCCCGAAACGCTATGATCTTCATCTCAAACTTGATCTCTCTGCCTGCACCTTCTCCGGCACCGTGCAGATTAACGTTAGCATCGTTGAAGAGACCAAGTTTCTTGTCTTGAACGCTCTTGAACTTGATGTTCATCAAGTTTGGTTCACCAACTCTCACGGCCAAAAGTACCACCCCTGCGATGTTGTTTTGGATGGAGATGATGAAGTTCTTGTTTTGGTATTTGATAAAGCACTTGGTATTGGTGAGGGAGTCTTGGGGGTTGACTTTTCTGCAGTCCTTAATGCGCACTTGGTGGGGTTATATAAATGTGCTTATATGGATGGGGAAGAGAAAAAGAATATGGCTGTTACTCAATTCGAAGCTGTGGATGCGAGGAGGTTCTTTCCATGTTGGGATGAACCTGCTCTCAAGGCTAGATTCAAGATAGCATTAGATGTACCATCAGAGCTGACAGCTTTGTCCAATATGCCTATTATTAATGAGAAGTGTGATGGAGATGTTAAGACTGTGTCTTTTGAGGAATCTCCAATCATGTCAACTTATTTGGTGGCTGTTGTTGTTGGCCTATTTGATCATATTGAAGATACAACATCTGATGGGGTAAAGGTTAGTGCATATTGCCCTGTTGGGAAGAGTGATAAAGGGGAATTTGCGTTAAATGTTACTGTTATGACCCTTGATCTTTTCTCCAAATACTTCTCAACGCCTTACTCACTCCCCAAACTTGATATGGTTGCGGTTCCTGAATTTTCCGGTGGGGCCATGGAGAATTATGGTTTGATCACATACCGTGAAACTGAACTGCTTTTTGATCCTTTGCATTCCACAGCAGCAAGAAAGCAAAGAATGGCAATTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGGTAACAATGGAATGGTGGACTGATTTATGGCTTAACGAGGGTTTTGCAACATGGATAAGTTATATGGCCACTGATATTTTGTTTCCTGAGTGGAAAGTTTGGTCTCAATTTCTTCAATATACTACTGGTGGCCTAATTATGGATGCCCTGGAACAATCACATCCAATTCAGGTAGAGGTACACCACGCACGTTCAGTTCTTGAAATATTCGATGCTATCAGTTATGAAAAGGGATCTGCTGTTATACGAATGCTGCAGGCTTATCTTGGTGATGATATATTCCAGAAATCGTTAAGTTCCTACATAAAAAGATATTCTGAAAAAAATGCAAAGACAGAAGATTTATGGAGTGTTCTGTCGGAGGAATCTGGTCTCAAAATCAGTGAAATGATGGATGATTGGACTAAGAAACAAGGATATCCTGTGATCTCTGTAACAGCAAAGGATCATATTTTGGAATTTGAGCAGACACAGTTTCTGTCAGCAGGTTTGCATAGTGAAGGGAAATGGATTGTTCCAGTAACTATTTCACTCGGTTCATATGAGAGACGCAAGAATTTCCTTTTGGAAACAAAGTCCAGTGAAGTGGACATATCAGATCTTGTTGACACTTCTGATACTAATTTAAAGAATAAAGAGACATGTGATGAACAACTGTGGGTCAAGGTTAATATCGAGCAGAGTGGTTTTTATAGGGTAAAATATGAAGATAAGCTAGCAGCTCGACTTAGGAAGGCTATTGAGCATAATAGCTTGGAAGCAACAGACAAATTTGGTATTCTGGATGATGCATACGCCCTTTGCGAAGCTTGTGAACTGTCACTATCATCTTTGCTTTCCTTGATGGATGTATACAGAAAAGAAGCTGATTATATTGTCTTATCAAAGCTTATAGACGTATGTTATAACATTGTTAAAGTATCAAGCGAGGCCATCCCTGATTCAGTGAATGAGTTGAAGCAATTTTGCATCAAATCTCCTCATGTTTCCATCAGAGTAAGCAGTATTATGCTAAGGTGA

Protein Analysis

659

Amino Acids

74.51

Weight (kDa)

4.95

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M1_N PF17900 22 - 203 1e-48 Peptidase M1 N-terminal domain
Peptidase_M1 PF01433 238 - 454 1.1e-83 Peptidase family M1 domain
ERAP1_C PF11838 540 - 643 3.7e-21 ERAP1-like C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000648)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1866
AasI GACNNNNNNGTC 1 cut(s) 520
Acc16I TGCGCA 1 cut(s) 348
Acc36I ACCTGC 2 cut(s) 472, 1436
AccB1I GGYRCC 1 cut(s) 119
AccI GTMKAC 1 cut(s) 1812
AciI CCGC 1 cut(s) 800
AclI AACGTT 1 cut(s) 135
AclWI GGATC 3 cut(s) 869, 1201, 1413
AcoI YGGCCR 2 cut(s) 220, 1026
AcsI RAATTY 6 cut(s) 52, 710, 809, 1418, 1516, 1730
AdeI CACNNNGTG 1 cut(s) 355
AfaI GTAC 3 cut(s) 230, 501, 1140
AfiI CCNNNNNNNGG 1 cut(s) 1099
AflIII ACRYGT 1 cut(s) 1601
AgsI TTSAA 8 cut(s) 149, 172, 182, 484, 644, 1076, 1163, 1918
AjnI CCWGG 1 cut(s) 1107
AjuI GAANNNNNNNTTGG 2 cut(s) 1508, 1540
AleI CACNNNNGTG 1 cut(s) 943
AluBI AGCT 9 cut(s) 425, 511, 518, 1675, 1682, 1713, 1769, 1826, 1849
AluI AGCT 9 cut(s) 425, 511, 518, 1675, 1682, 1713, 1769, 1826, 1849
Alw26I GTCTC 5 cut(s) 146, 1068, 1337, 1501, 1592
AlwI GGATC 3 cut(s) 869, 1201, 1413
AlwNI CAGNNNCTG 1 cut(s) 1438
AoxI GGCC 7 cut(s) 34, 220, 625, 822, 1026, 1090, 1890
ApeKI GCWGC 3 cut(s) 893, 1213, 1679
ApoI RAATTY 6 cut(s) 52, 710, 809, 1418, 1516, 1730
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 1 cut(s) 822
AsuHPI GGTGA 3 cut(s) 199, 317, 1241
AsuII TTCGAA 1 cut(s) 420
AsuNHI GCTAGC 1 cut(s) 1675
BalI TGGCCA 1 cut(s) 1028
BanI GGYRCC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 905, 1200, 1691
BccI CCATC 9 cut(s) 248, 377, 511, 548, 653, 1345, 1798, 1901, 1958
BceAI ACGGC 1 cut(s) 235
BcgI CGANNNNNNTGC 2 cut(s) 986, 1020
BciT130I CCWGG 1 cut(s) 1109
BclI TGATCA 2 cut(s) 634, 843
BcoDI GTCTC 5 cut(s) 146, 1068, 1337, 1501, 1592
BfaI CTAG 2 cut(s) 477, 1676
BfmI CTRYAG 2 cut(s) 333, 1214
BfuAI ACCTGC 2 cut(s) 472, 1436
BglII AGATCT 1 cut(s) 1558
BisI GCNGC 3 cut(s) 894, 1214, 1680
BlsI GCNGC 3 cut(s) 895, 1215, 1681
Bme1390I CCNGG 1 cut(s) 1109
BmgT120I GGNCC 1 cut(s) 822
BmiI GGNNCC 3 cut(s) 121, 804, 823
BmrFI CCNGG 1 cut(s) 1109
BmsI GCATC 6 cut(s) 150, 421, 1093, 1162, 1738, 1938
BmtI GCTAGC 1 cut(s) 1679
Bpu10I CCTNAGC 1 cut(s) 1973
Bpu14I TTCGAA 1 cut(s) 420
BpuEI CTTGAG 1 cut(s) 455
BsaBI GATNNNNATC 2 cut(s) 81, 192
BsaI GGTCTC 3 cut(s) 146, 1068, 1337
BsaJI CCNNGG 2 cut(s) 825, 1107
BsaWI WCCGGW 1 cut(s) 815
Bsc4I CCNNNNNNNGG 1 cut(s) 1099
Bse1I ACTGG 3 cut(s) 1090, 1478, 1539
Bse8I GATNNNNATC 2 cut(s) 81, 192
BseBI CCWGG 1 cut(s) 1109
BseDI CCNNGG 2 cut(s) 825, 1107
BseJI GATNNNNATC 2 cut(s) 81, 192
BseLI CCNNNNNNNGG 1 cut(s) 1099
BseMII CTCAG 1 cut(s) 1038
BseNI ACTGG 3 cut(s) 1090, 1478, 1539
BseRI GAGGAG 2 cut(s) 451, 1929
BseXI GCAGC 3 cut(s) 905, 1200, 1691
BsgI GTGCAG 2 cut(s) 91, 146
BshFI GGCC 7 cut(s) 36, 222, 627, 824, 1028, 1092, 1892
BshNI GGYRCC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 117, 816
BslI CCNNNNNNNGG 1 cut(s) 1099
BsmAI GTCTC 5 cut(s) 146, 1068, 1337, 1501, 1592
BsmBI CGTCTC 1 cut(s) 1501
BsmI GAATGC 2 cut(s) 883, 1215
BsnI GGCC 7 cut(s) 36, 222, 627, 824, 1028, 1092, 1892
Bso31I GGTCTC 3 cut(s) 146, 1068, 1337
Bsp119I TTCGAA 1 cut(s) 420
Bsp19I CCATGG 1 cut(s) 825
BspACI CCGC 1 cut(s) 800
BspANI GGCC 7 cut(s) 36, 222, 627, 824, 1028, 1092, 1892
BspCNI CTCAG 1 cut(s) 1039
BspLI GGNNCC 3 cut(s) 121, 804, 823
BspMAI CTGCAG 2 cut(s) 337, 1218
BspMI ACCTGC 2 cut(s) 472, 1436
BspOI GCTAGC 1 cut(s) 1679
BspPI GGATC 3 cut(s) 869, 1201, 1413
BspT104I TTCGAA 1 cut(s) 420
BspT107I GGYRCC 1 cut(s) 119
BspTNI GGTCTC 3 cut(s) 146, 1068, 1337
BsrI ACTGG 3 cut(s) 1090, 1478, 1539
BssECI CCNNGG 2 cut(s) 825, 1107
BssNAI GTATAC 1 cut(s) 1813
BssT1I CCWWGG 1 cut(s) 825
Bst1107I GTATAC 1 cut(s) 1813
Bst2UI CCWGG 1 cut(s) 1109
Bst4CI ACNGT 7 cut(s) 124, 571, 730, 854, 1434, 1617, 1779
Bst6I CTCTTC 3 cut(s) 144, 384, 689
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 3 cut(s) 106, 1218, 1677
BstDEI CTNAG 4 cut(s) 1047, 1365, 1688, 1973
BstDSI CCRYGG 1 cut(s) 825
BstEII GGTNACC 1 cut(s) 45
BstHHI GCGC 1 cut(s) 349
BstMAI GTCTC 5 cut(s) 146, 1068, 1337, 1501, 1592
BstMWI GCNNNNNNNGC 2 cut(s) 431, 473
BstNI CCWGG 1 cut(s) 1109
BstNSI RCATGY 1 cut(s) 1605
BstPI GGTNACC 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 1107
BstSFI CTRYAG 2 cut(s) 333, 1214
BstV1I GCAGC 3 cut(s) 905, 1200, 1691
BstX2I RGATCY 2 cut(s) 1193, 1558
BstXI CCANNNNNNTGG 1 cut(s) 1546
BstYI RGATCY 2 cut(s) 1193, 1558
BstZ17I GTATAC 1 cut(s) 1813
BsuRI GGCC 7 cut(s) 36, 222, 627, 824, 1028, 1092, 1892
BtgI CCRYGG 1 cut(s) 825
BtgZI GCGATG 1 cut(s) 255
BtsIMutI CAGTG 5 cut(s) 950, 1029, 1348, 1546, 1911
BveI ACCTGC 2 cut(s) 472, 1436
Cac8I GCNNGC 3 cut(s) 106, 1218, 1677
CaiI CAGNNNCTG 1 cut(s) 1438
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 1 cut(s) 822
CseI GACGC 1 cut(s) 1518
Csp6I GTAC 3 cut(s) 229, 500, 1139
CviAII CATG 7 cut(s) 450, 595, 826, 929, 1011, 1602, 1943
CviQI GTAC 3 cut(s) 229, 500, 1139
DdeI CTNAG 4 cut(s) 1047, 1365, 1688, 1973
DraI TTTAAA 2 cut(s) 31, 1587
DraIII CACNNNGTG 1 cut(s) 355
DrdI GACNNNNNNGTC 1 cut(s) 520
DseDI GACNNNNNNGTC 1 cut(s) 520
EaeI YGGCCR 2 cut(s) 220, 1026
Eam1104I CTCTTC 3 cut(s) 144, 384, 689
EarI CTCTTC 3 cut(s) 144, 384, 689
Eco130I CCWWGG 1 cut(s) 825
Eco31I GGTCTC 3 cut(s) 146, 1068, 1337
Eco32I GATATC 1 cut(s) 1379
Eco91I GGTNACC 1 cut(s) 45
EcoO65I GGTNACC 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 1107
EcoRV GATATC 1 cut(s) 1379
EcoT14I CCWWGG 1 cut(s) 825
EcoT22I ATGCAT 1 cut(s) 1753
ErhI CCWWGG 1 cut(s) 825
Esp3I CGTCTC 1 cut(s) 1501
FaeI CATG 7 cut(s) 453, 598, 829, 932, 1014, 1605, 1946
FatI CATG 7 cut(s) 449, 594, 825, 928, 1010, 1601, 1942
FauNDI CATATG 1 cut(s) 1501
FbaI TGATCA 2 cut(s) 634, 843
FblI GTMKAC 1 cut(s) 1812
Fnu4HI GCNGC 3 cut(s) 894, 1214, 1680
Fsp4HI GCNGC 3 cut(s) 894, 1214, 1680
FspAI RTGCGCAY 1 cut(s) 348
FspBI CTAG 2 cut(s) 477, 1676
FspI TGCGCA 1 cut(s) 348
GlaI GCGC 1 cut(s) 348
GluI GCNGC 3 cut(s) 894, 1214, 1680
HaeIII GGCC 7 cut(s) 36, 222, 627, 824, 1028, 1092, 1892
HapII CCGG 2 cut(s) 117, 816
HgaI GACGC 1 cut(s) 1518
HhaI GCGC 1 cut(s) 349
Hin1II CATG 7 cut(s) 453, 598, 829, 932, 1014, 1605, 1946
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 3 cut(s) 325, 600, 1567
HindII GTYRAC 3 cut(s) 325, 600, 1567
HindIII AAGCTT 2 cut(s) 1767, 1847
HinfI GANTC 5 cut(s) 312, 480, 584, 1325, 1901
HpaII CCGG 2 cut(s) 117, 816
HphI GGTGA 3 cut(s) 199, 317, 1241
Hpy166II GTNNAC 9 cut(s) 207, 325, 600, 978, 1141, 1549, 1567, 1775, 1813
Hpy188I TCNGA 7 cut(s) 508, 658, 1279, 1321, 1558, 1576, 1955
Hpy188III TCNNGA 9 cut(s) 64, 169, 179, 484, 806, 1046, 1160, 1243, 1742
Hpy8I GTNNAC 9 cut(s) 207, 325, 600, 978, 1141, 1549, 1567, 1775, 1813
HpyAV CCTTC 3 cut(s) 121, 1454, 1687
HpyCH4III ACNGT 7 cut(s) 124, 571, 730, 854, 1434, 1617, 1779
HpyCH4IV ACGT 3 cut(s) 135, 1150, 1857
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 473
HpyF3I CTNAG 4 cut(s) 1047, 1365, 1688, 1973
HpySE526I ACGT 3 cut(s) 135, 1150, 1857
Hsp92II CATG 7 cut(s) 453, 598, 829, 932, 1014, 1605, 1946
HspAI GCGC 1 cut(s) 347
Ksp22I TGATCA 2 cut(s) 634, 843
Lsp1109I GCAGC 3 cut(s) 905, 1200, 1691
LweI GCATC 6 cut(s) 150, 421, 1093, 1162, 1738, 1938
MaeI CTAG 2 cut(s) 477, 1676
MaeII ACGT 3 cut(s) 135, 1150, 1857
MaeIII GTNAC 7 cut(s) 45, 409, 724, 961, 1393, 1480, 1779
MboII GAAGA 8 cut(s) 71, 161, 401, 656, 706, 1064, 1310, 1679
MfeI CAATTG 1 cut(s) 915
MflI RGATCY 2 cut(s) 1193, 1558
MlsI TGGCCA 1 cut(s) 1028
MluNI TGGCCA 1 cut(s) 1028
MlyI GAGTC 1 cut(s) 321
MmeI TCCRAC 1 cut(s) 1299
MnlI CCTC 9 cut(s) 301, 429, 432, 574, 991, 1129, 1315, 1882, 1950
Mox20I TGGCCA 1 cut(s) 1028
Mph1103I ATGCAT 1 cut(s) 1753
MscI TGGCCA 1 cut(s) 1028
MslI CAYNNNNRTG 1 cut(s) 943
Msp20I TGGCCA 1 cut(s) 1028
MspI CCGG 2 cut(s) 117, 816
MspR9I CCNGG 1 cut(s) 1109
MunI CAATTG 1 cut(s) 915
Mva1269I GAATGC 2 cut(s) 883, 1215
MvaI CCWGG 1 cut(s) 1109
MwoI GCNNNNNNNGC 2 cut(s) 431, 473
NcoI CCATGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 1501
NheI GCTAGC 1 cut(s) 1675
NlaIII CATG 7 cut(s) 453, 598, 829, 932, 1014, 1605, 1946
NlaIV GGNNCC 3 cut(s) 121, 804, 823
NmuCI GTSAC 1 cut(s) 1779
NsbI TGCGCA 1 cut(s) 348
NsiI ATGCAT 1 cut(s) 1753
NspI RCATGY 1 cut(s) 1605
NspV TTCGAA 1 cut(s) 420
OliI CACNNNNGTG 1 cut(s) 943
PciI ACATGT 1 cut(s) 1601
PcsI WCGNNNNNNNCGW 2 cut(s) 141, 1761
PctI GAATGC 2 cut(s) 883, 1215
PfeI GAWTC 4 cut(s) 480, 584, 1325, 1901
PflFI GACNNNGTC 1 cut(s) 571
PkrI GCNGC 3 cut(s) 895, 1215, 1681
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PscI ACATGT 1 cut(s) 1601
PshBI ATTAAT 1 cut(s) 540
PsiI TTATAA 1 cut(s) 1866
Psp1406I AACGTT 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 1107
PspEI GGTNACC 1 cut(s) 45
PspGI CCWGG 1 cut(s) 1107
PspN4I GGNNCC 3 cut(s) 121, 804, 823
PspPI GGNCC 1 cut(s) 822
PstI CTGCAG 2 cut(s) 337, 1218
PstNI CAGNNNCTG 1 cut(s) 1438
PsuI RGATCY 2 cut(s) 1193, 1558
PsyI GACNNNGTC 1 cut(s) 571
RsaI GTAC 3 cut(s) 230, 501, 1140
RsaNI GTAC 3 cut(s) 229, 500, 1139
RseI CAYNNNNRTG 1 cut(s) 943
SatI GCNGC 3 cut(s) 894, 1214, 1680
Sau96I GGNCC 1 cut(s) 822
SchI GAGTC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 1109
SfaNI GCATC 6 cut(s) 150, 421, 1093, 1162, 1738, 1938
SfcI CTRYAG 2 cut(s) 333, 1214
SfuI TTCGAA 1 cut(s) 420
SmiMI CAYNNNNRTG 1 cut(s) 943
SmlI CTYRAG 1 cut(s) 470
SmoI CTYRAG 1 cut(s) 470
SsiI CCGC 1 cut(s) 800
SspI AATATT 1 cut(s) 1167
SspMI CTAG 2 cut(s) 477, 1676
StyD4I CCNGG 1 cut(s) 1107
StyI CCWWGG 1 cut(s) 825
TaaI ACNGT 7 cut(s) 124, 571, 730, 854, 1434, 1617, 1779
TaiI ACGT 3 cut(s) 138, 1153, 1860
TaqI TCGA 4 cut(s) 420, 1170, 1635, 1684
TfiI GAWTC 4 cut(s) 480, 584, 1325, 1901
TscAI CASTG 5 cut(s) 950, 1036, 1348, 1546, 1911
TseFI GTSAC 1 cut(s) 1779
TseI GCWGC 3 cut(s) 893, 1213, 1679
Tsp45I GTSAC 1 cut(s) 1779
TspDTI ATGAA 9 cut(s) 71, 182, 279, 474, 945, 1200, 1488, 1623, 1680
TspRI CASTG 5 cut(s) 950, 1036, 1348, 1546, 1911
Tth111I GACNNNGTC 1 cut(s) 571
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 6 cut(s) 52, 710, 809, 1418, 1516, 1730
XceI RCATGY 1 cut(s) 1605
XcmI CCANNNNNNNNNTGG 1 cut(s) 790
XmiI GTMKAC 1 cut(s) 1812
XspI CTAG 2 cut(s) 477, 1676
Zsp2I ATGCAT 1 cut(s) 1753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.