Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

68334143 .. 68340483

Gene Structure 6341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28002

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2661 bp

ATGTCACAGTTCAAAGGCCAATCTCGGCTTCCCAAATTCGCCGTGCCGAAACGCTACGACGTAAGGCTCAGACCCGACCTCGTCGCCTGCCAATTCGTCGGCTCCGTCGCCATCGACCTCGACATCGTCTCCGATACCCGCTTCATCGTCCTCAACGCGGCCGAGCTCTCCGTCAACCCCCCTGCGGTGTCCTTCACTCAACTAGACTCTTCCAAGGTTTTCAAGCCATCGAAAGTCGACGGATTTGAAGATGATGGCATTTTGGTCATGGAGTTTGAGGAGACGATTCCAGTTGGGCTGGGAGTTTTGGCTATTGGGTTTCAAGGAATTTTGAATGACAAGATGAAGGGATTCTATAGAAGTACATATGAGCATAATGGGGAGAAGAAAAACATGGCTGTTACACAGTTTGAACCGGTTGATGCCAAGCGCTGCTTTCCGTGTTGGGATGAACCTGCTTGCAAGGCTACATTCAAAATTACATTGGAAGATGTACCATCTGAATTGGTAGCTCTTTCCAACATGCCAGTTTCACAAGAAATAGTGAATGGACATCGGAAGACAGTTTCATATCAGGAGACACCAATTATGTCTACATATTTGGTGGCCATTGTTGTTGGATTGTTCGATTACATTGAAGATCACACTTCTGATGGGGTCAAAGTGAGGGTCTATTGTCAAGTTGGTAAGGAAAACCGAGGGAAATTTGCTTTGCAGGTTGCTGTCAAGACACTTGAATTGTACAAAAAATACTTTGGTGTGCCTTACCCTTTGCCAAAATTGGATATGGTCGCAATCCCTGATTTTTCGGCTGGGGCCATGGAGAATTATGGTTTAGTTACATACCGTGAGACAGCTTTGCTCTTTGATGATCAGCATTCTTCAGCTTCCGTCAAGCAAAATGTTACAATAACCGTAGCACATGAATTGGCACACCAGTGGTTTGGCAATCTTGTAACCATGGAATGGTGGACACATTTATGGCTCAATGAGGGATTTGCAACATGGGTGAGCTATTTAGCTACTGAGAGCTTGTTTCCTGAGTGGAAAATATGGACTCAGTTTCTTGATGAATCTACTGAGGGTCTTAAGCTGGATGGTCTTGAAGAATCCCACCCCATCGAGGTGGAGATAAATCATGCTGCTGAGGTTGATGAAATATTTGATGCAATAAGTTATACAAAAGGTGCTTCTGTTATTAGGATGCTACAAAATTATCTTGGTGCTGCACCCTTTGAGAGGTCACTGGCTGCATATGTAAAGAAACATGCTTACTCAAATGCAAAGACAGAAGACTTATGGGCTGCCCTTGAAGAGGGATCTGGTGAACCTGTGAACAAGCTGATGAATTCGTGGACGCAGCAGAAAGGCTACCCAGTTGTTTCTGTCGAAGTCAAAGATCAAAAATTGAAGTTTGATCAGACACAATTCTTGTCAAGTGGTTCCCAAGGCGAAGGAGAATGGATTGTGCCAATAACATTATGCTGTGGCTCGTATGATTTACGCAAGAGCTTCCTACTCAAAACTAAGTCTGAAACTCTTGACATAAAGGAATTTCTAGGTTGTTCAATAGCAGAGACTGAAAGTGGAAGCATGTGCAATAAAAACAATACAGTATGCAGTTGGATAAAAATCAATGTAGATCAAGCTGGTTTTTACAGGGTGAAATATGATGAGAAACTTGCAGCTACACTAAGAAATGCTATACAGAACAAACACTTGTCTGCAACAGACAGATTTGGCATTTTGGATGATTCATATGCCCTTTCTATGGCTCGTCAGCTGTCTTTTGCTTCGTTGCTTACCTTGTTGGCTGCTTACAAAGAGGAACTTGACTATACAGTCCTGTCAAATTTGATTTCTATTAGTCAAAAGCTCGCAAGAATTGCAGCTGATGCAATACCCGAGCTACTTGATCTCATCAATCAGTTCTTTATTGGCCTTCTTCAGTACTCTGCAGAGAAGCTTGGTTGGCAGCCCAAACCCGGTGAGAGCCATTTAGATGCAATGTTGAGAGGGGAAGTTTTGACCACCCTTGCTTTATTTGGACATGACCTGACAATTAATGAAGCAAGGAGGCGTTTTCATGCCTACATAGATGACAGAAATACGCCTCTCCTTCCTCCTGACATTAGAAAGGCAGCATATGTGGCTGTAATGCAAACAGTAACCCAATCAAACAGAGCAGGCTATGACTCTCTTCTTAGAGTTTACAGAGAGAGTGATCAAAGCGAGGAGAAAAACCGCATTTTAGGTTCATTAGCATCCTGTCCAGATCCAGACATTATACTGGAAGTTCTCAACTTTTTGTTGACTTCAGAGGTCCGCAACCAGGATGCTATTTTTGGACTTGCTGTTTGTAGTAAAGGACGGGAAACAGCTTGGACTTGGCTGAAGGATAACTGGGAGAAAATCTCAAAGACCTGGGGTTCTGGATTTCTAATTACTCGCTTTGTCAGTGCAATTGTTTCACCGCTTGCTTCATTTGAGAAGGTTGAGGAAGTAGAGGAGTTCTTCAAAGCCCATCCTAACCCTGCCATAACTAGAACCTTGAAGCAGAGCATTGAGCGAGTACAGATTAACGCCAAGTGGGTTCAGAGTGTTCAGGGTGAGAAAGATCTTCCCAAGGTTTTGAAGGAGTTGGCTTCCAGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

886

Amino Acids

99.73

Weight (kDa)

5.43

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	15 - 201	4.8e-45	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	236 - 452	7.4e-88	Peptidase family M1 domain
ERAP1_C	PF11838	542 - 859	4.3e-86	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1841
Acc36I	ACCTGC	2 cut(s)	463, 706
AccB7I	CCANNNNNTGG	1 cut(s)	966
AccI	GTMKAC	2 cut(s)	237, 593
AccII	CGCG	1 cut(s)	158
AciI	CCGC	6 cut(s)	139, 158, 185, 2245, 2326, 2474
AclWI	GGATC	2 cut(s)	1327, 2270
AcoI	YGGCCR	2 cut(s)	159, 606
AcsI	RAATTY	6 cut(s)	35, 327, 704, 1348, 1553, 1852
AcuI	CTGAAG	4 cut(s)	867, 1931, 2301, 2414
AfaI	GTAC	5 cut(s)	364, 495, 743, 1952, 2574
AfeI	AGCGCT	1 cut(s)	431
AfiI	CCNNNNNNNGG	9 cut(s)	157, 184, 966, 1123, 1239, 1315, 1771, 1985, 2332
AflII	CTTAAG	1 cut(s)	1088
AgeI	ACCGGT	1 cut(s)	415
AjnI	CCWGG	3 cut(s)	2331, 2423, 2648
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AleI	CACNNNNGTG	1 cut(s)	937
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	5 cut(s)	133, 275, 572, 845, 1571
AlwI	GGATC	2 cut(s)	1327, 2270
AlwNI	CAGNNNCTG	1 cut(s)	1580
Ama87I	CYCGRG	1 cut(s)	1904
Aor51HI	AGCGCT	1 cut(s)	431
AoxI	GGCC	5 cut(s)	16, 159, 606, 816, 1939
ApoI	RAATTY	6 cut(s)	35, 327, 704, 1348, 1553, 1852
ArsI	GACNNNNNNTTYG	4 cut(s)	654, 686, 2340, 2372
AseI	ATTAAT	1 cut(s)	2064
AsiGI	ACCGGT	1 cut(s)	415
Asp700I	GAANNNNTTC	1 cut(s)	350
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	816, 2323
AsuC2I	CCSGG	1 cut(s)	1986
AsuHPI	GGTGA	6 cut(s)	1021, 1337, 1675, 2000, 2463, 2621
AvaI	CYCGRG	1 cut(s)	1904
AvaII	GGWCC	1 cut(s)	2323
BalI	TGGCCA	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	566, 1299
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	1146
BccI	CCATC	8 cut(s)	119, 235, 248, 505, 647, 1091, 1127, 2532
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	3 cut(s)	2333, 2425, 2650
BclI	TGATCA	3 cut(s)	871, 1417, 2224
BcnI	CCSGG	1 cut(s)	1986
BcoDI	GTCTC	5 cut(s)	133, 275, 572, 845, 1571
BfaI	CTAG	4 cut(s)	203, 1559, 2544, 2659
BfmI	CTRYAG	2 cut(s)	355, 1956
BfoI	RGCGCY	1 cut(s)	433
BfrI	CTTAAG	1 cut(s)	1088
BfuAI	ACCTGC	2 cut(s)	463, 706
BglII	AGATCT	1 cut(s)	2617
BmcAI	AGTACT	1 cut(s)	1952
Bme1390I	CCNGG	4 cut(s)	1986, 2333, 2425, 2650
Bme18I	GGWCC	1 cut(s)	2323
BmeT110I	CYCGRG	1 cut(s)	1904
BmgT120I	GGNCC	2 cut(s)	816, 2323
BmiI	GGNNCC	3 cut(s)	103, 817, 1444
BmrFI	CCNGG	4 cut(s)	1986, 2333, 2425, 2650
BmrI	ACTGGG	2 cut(s)	1370, 2413
BmsI	GCATC	7 cut(s)	412, 1156, 1194, 1885, 1993, 2273, 2326
BmuI	ACTGGG	2 cut(s)	1370, 2413
BpiI	GAAGAC	2 cut(s)	566, 1299
BplI	GAGNNNNNCTC	2 cut(s)	2399, 2431
Bpu10I	CCTNAGC	1 cut(s)	1146
BpuMI	CCSGG	1 cut(s)	1986
BsaBI	GATNNNNATC	1 cut(s)	1631
BsaJI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2424, 2625
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	9 cut(s)	157, 184, 966, 1123, 1239, 1315, 1771, 1985, 2332
Bse118I	RCCGGY	1 cut(s)	415
Bse1I	ACTGG	7 cut(s)	290, 527, 937, 1251, 1376, 2295, 2408
Bse3DI	GCAATG	1 cut(s)	2013
Bse8I	GATNNNNATC	1 cut(s)	1631
BseBI	CCWGG	3 cut(s)	2333, 2425, 2650
BseDI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2424, 2625
BseGI	GGATG	7 cut(s)	454, 1102, 1209, 1756, 2264, 2341, 2524
BseJI	GATNNNNATC	1 cut(s)	1631
BseLI	CCNNNNNNNGG	9 cut(s)	157, 184, 966, 1123, 1239, 1315, 1771, 1985, 2332
BseMI	GCAATG	1 cut(s)	2013
BseMII	CTCAG	6 cut(s)	82, 1017, 1032, 1071, 1073, 1137
BseNI	ACTGG	7 cut(s)	290, 527, 937, 1251, 1376, 2295, 2408
BseRI	GAGGAG	3 cut(s)	293, 2249, 2522
BseX3I	CGGCCG	1 cut(s)	159
BseYI	CCCAGC	2 cut(s)	298, 812
BsgI	GTGCAG	1 cut(s)	1212
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	162
BshFI	GGCC	5 cut(s)	18, 161, 608, 818, 1941
BshTI	ACCGGT	1 cut(s)	415
BsiEI	CGRYCG	1 cut(s)	162
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	1904
BsiSI	CCGG	2 cut(s)	416, 1986
BslI	CCNNNNNNNGG	9 cut(s)	157, 184, 966, 1123, 1239, 1315, 1771, 1985, 2332
BsmAI	GTCTC	5 cut(s)	133, 275, 572, 845, 1571
BsmBI	CGTCTC	2 cut(s)	133, 275
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	5 cut(s)	18, 161, 608, 818, 1941
BsoBI	CYCGRG	1 cut(s)	1904
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	741
Bsp19I	CCATGG	2 cut(s)	819, 960
BspACI	CCGC	6 cut(s)	139, 158, 185, 2245, 2326, 2474
BspANI	GGCC	5 cut(s)	18, 161, 608, 818, 1941
BspCNI	CTCAG	6 cut(s)	81, 1018, 1033, 1072, 1072, 1138
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	3 cut(s)	103, 817, 1444
BspMAI	CTGCAG	1 cut(s)	1960
BspMI	ACCTGC	2 cut(s)	463, 706
BspPI	GGATC	2 cut(s)	1327, 2270
BspTI	CTTAAG	1 cut(s)	1088
BsrDI	GCAATG	1 cut(s)	2013
BsrFI	RCCGGY	1 cut(s)	415
BsrGI	TGTACA	1 cut(s)	741
BsrI	ACTGG	7 cut(s)	290, 527, 937, 1251, 1376, 2295, 2408
BssAI	RCCGGY	1 cut(s)	415
BssECI	CCNNGG	7 cut(s)	213, 697, 819, 960, 1447, 2424, 2625
BssT1I	CCWWGG	5 cut(s)	213, 819, 960, 1447, 2625
Bst2UI	CCWGG	3 cut(s)	2333, 2425, 2650
Bst4CI	ACNGT	8 cut(s)	9, 408, 565, 848, 916, 1615, 1843, 2167
Bst6I	CTCTTC	3 cut(s)	214, 1308, 2205
BstAFI	CTTAAG	1 cut(s)	1088
BstAPI	GCANNNNNTGC	2 cut(s)	1886, 1895
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	5 cut(s)	88, 460, 1878, 2188, 2478
BstDEI	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1694, 2204
BstDSI	CCRYGG	2 cut(s)	819, 960
BstENI	CCTNNNNNAGG	2 cut(s)	1237, 1313
BstF5I	GGATG	7 cut(s)	454, 1102, 1209, 1756, 2264, 2341, 2524
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstMAI	GTCTC	5 cut(s)	133, 275, 572, 845, 1571
BstMCI	CGRYCG	1 cut(s)	162
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 1886, 1895, 1972, 2150
BstNI	CCWGG	3 cut(s)	2333, 2425, 2650
BstNSI	RCATGY	3 cut(s)	526, 1271, 1597
BstSCI	CCNGG	4 cut(s)	1984, 2331, 2423, 2648
BstSFI	CTRYAG	2 cut(s)	355, 1956
BstUI	CGCG	1 cut(s)	158
BstV2I	GAAGAC	2 cut(s)	566, 1299
BstX2I	RGATCY	3 cut(s)	1319, 2275, 2617
BstXI	CCANNNNNNTGG	2 cut(s)	944, 1126
BstYI	RGATCY	3 cut(s)	1319, 2275, 2617
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	5 cut(s)	18, 161, 608, 818, 1941
BtgI	CCRYGG	2 cut(s)	819, 960
BtsCI	GGATG	7 cut(s)	454, 1102, 1209, 1756, 2264, 2341, 2524
BtsIMutI	CAGTG	3 cut(s)	944, 1244, 2464
BveI	ACCTGC	2 cut(s)	463, 706
Cac8I	GCNNGC	5 cut(s)	88, 460, 1878, 2188, 2478
CaiI	CAGNNNCTG	1 cut(s)	1580
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	816, 2323
CseI	GACGC	1 cut(s)	1366
Csp6I	GTAC	5 cut(s)	363, 494, 742, 1951, 2573
CspAI	ACCGGT	1 cut(s)	415
CviQI	GTAC	5 cut(s)	363, 494, 742, 1951, 2573
DdeI	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1694, 2204
DrdI	GACNNNNNNGTC	1 cut(s)	1841
DseDI	GACNNNNNNGTC	1 cut(s)	1841
EaeI	YGGCCR	2 cut(s)	159, 606
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	3 cut(s)	214, 1308, 2205
EarI	CTCTTC	3 cut(s)	214, 1308, 2205
Ecl136II	GAGCTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	5 cut(s)	213, 819, 960, 1447, 2625
Eco24I	GRGCYC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	2323
Eco47III	AGCGCT	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	4 cut(s)	867, 1931, 2301, 2414
Eco88I	CYCGRG	1 cut(s)	1904
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	2 cut(s)	1237, 1313
EcoRI	GAATTC	1 cut(s)	1348
EcoRII	CCWGG	3 cut(s)	2331, 2423, 2648
EcoT14I	CCWWGG	5 cut(s)	213, 819, 960, 1447, 2625
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	5 cut(s)	213, 819, 960, 1447, 2625
Esp3I	CGTCTC	2 cut(s)	133, 275
FalI	AAGNNNNNCTT	4 cut(s)	419, 451, 1815, 1847
FauI	CCCGC	1 cut(s)	146
FauNDI	CATATG	4 cut(s)	367, 1255, 1759, 2146
FbaI	TGATCA	3 cut(s)	871, 1417, 2224
FblI	GTMKAC	2 cut(s)	237, 593
FokI	GGATG	7 cut(s)	461, 1109, 1216, 1763, 2251, 2348, 2511
FriOI	GRGCYC	1 cut(s)	168
FspBI	CTAG	4 cut(s)	203, 1559, 2544, 2659
GlaI	GCGC	1 cut(s)	431
GsaI	CCCAGC	2 cut(s)	302, 816
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	5 cut(s)	18, 161, 608, 818, 1941
HapII	CCGG	2 cut(s)	416, 1986
HgaI	GACGC	1 cut(s)	1366
HhaI	GCGC	1 cut(s)	432
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HincII	GTYRAC	3 cut(s)	175, 238, 2313
HindII	GTYRAC	3 cut(s)	175, 238, 2313
HindIII	AAGCTT	1 cut(s)	1964
HinfI	GANTC	8 cut(s)	206, 286, 351, 1057, 1073, 1109, 1754, 2195
HpaII	CCGG	2 cut(s)	416, 1986
HphI	GGTGA	6 cut(s)	1021, 1337, 1675, 2000, 2463, 2621
Hpy166II	GTNNAC	9 cut(s)	175, 238, 594, 972, 1328, 1336, 1356, 2212, 2313
Hpy188I	TCNGA	9 cut(s)	71, 133, 502, 558, 652, 1422, 1534, 2320, 2598
Hpy8I	GTNNAC	9 cut(s)	175, 238, 594, 972, 1328, 1336, 1356, 2212, 2313
Hpy99I	CGWCG	5 cut(s)	62, 86, 101, 110, 242
HpyAV	CCTTC	8 cut(s)	202, 340, 1448, 1952, 2129, 2389, 2485, 2629
HpyCH4III	ACNGT	8 cut(s)	9, 408, 565, 848, 916, 1615, 1843, 2167
HpyCH4IV	ACGT	1 cut(s)	60
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 1886, 1895, 1972, 2150
HpyF3I	CTNAG	9 cut(s)	68, 1026, 1041, 1059, 1080, 1146, 1527, 1694, 2204
HpySE526I	ACGT	1 cut(s)	60
HspAI	GCGC	1 cut(s)	430
Ksp22I	TGATCA	3 cut(s)	871, 1417, 2224
LmnI	GCTCC	1 cut(s)	107
LweI	GCATC	7 cut(s)	412, 1156, 1194, 1885, 1993, 2273, 2326
MaeI	CTAG	4 cut(s)	203, 1559, 2544, 2659
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	7 cut(s)	3, 400, 838, 904, 955, 1242, 2167
MfeI	CAATTG	1 cut(s)	2463
MflI	RGATCY	3 cut(s)	1319, 2275, 2617
MhlI	GDGCHC	1 cut(s)	168
MlsI	TGGCCA	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	3 cut(s)	200, 1051, 2189
MmeI	TCCRAC	3 cut(s)	543, 598, 1604
Mox20I	TGGCCA	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	350
MscI	TGGCCA	1 cut(s)	608
MseI	TTAA	3 cut(s)	1089, 2064, 2580
MslI	CAYNNNNRTG	4 cut(s)	937, 979, 1124, 2001
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	2 cut(s)	1783, 1892
MspCI	CTTAAG	1 cut(s)	1088
MspI	CCGG	2 cut(s)	416, 1986
MspR9I	CCNGG	4 cut(s)	1986, 2333, 2425, 2650
MunI	CAATTG	1 cut(s)	2463
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	3 cut(s)	2333, 2425, 2650
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	5 cut(s)	464, 1886, 1895, 1972, 2150
NciI	CCSGG	1 cut(s)	1986
NcoI	CCATGG	2 cut(s)	819, 960
NdeI	CATATG	4 cut(s)	367, 1255, 1759, 2146
NlaIV	GGNNCC	3 cut(s)	103, 817, 1444
NmeAIII	GCCGAG	2 cut(s)	4, 187
NmuCI	GTSAC	2 cut(s)	3, 1242
NspI	RCATGY	3 cut(s)	526, 1271, 1597
OliI	CACNNNNGTG	1 cut(s)	937
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	877
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	5 cut(s)	286, 351, 1073, 1109, 1754
PflFI	GACNNNGTC	2 cut(s)	80, 125
PflMI	CCANNNNNTGG	1 cut(s)	966
PfoI	TCCNGGA	1 cut(s)	2648
PinAI	ACCGGT	1 cut(s)	415
PleI	GAGTC	3 cut(s)	200, 1051, 2189
PpsI	GAGTC	3 cut(s)	200, 1051, 2189
PshBI	ATTAAT	1 cut(s)	2064
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	2331, 2423, 2648
PspFI	CCCAGC	2 cut(s)	298, 812
PspGI	CCWGG	3 cut(s)	2331, 2423, 2648
PspN4I	GGNNCC	3 cut(s)	103, 817, 1444
PspPI	GGNCC	2 cut(s)	816, 2323
PstI	CTGCAG	1 cut(s)	1960
PstNI	CAGNNNCTG	1 cut(s)	1580
PsuI	RGATCY	3 cut(s)	1319, 2275, 2617
PsyI	GACNNNGTC	2 cut(s)	80, 125
PvuII	CAGCTG	2 cut(s)	1783, 1892
RsaI	GTAC	5 cut(s)	364, 495, 743, 1952, 2574
RsaNI	GTAC	5 cut(s)	363, 494, 742, 1951, 2573
RseI	CAYNNNNRTG	4 cut(s)	937, 979, 1124, 2001
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	1089, 2064, 2580
Sau96I	GGNCC	2 cut(s)	816, 2323
ScaI	AGTACT	1 cut(s)	1952
SchI	GAGTC	3 cut(s)	200, 1051, 2189
ScrFI	CCNGG	4 cut(s)	1986, 2333, 2425, 2650
SduI	GDGCHC	1 cut(s)	168
SfaNI	GCATC	7 cut(s)	412, 1156, 1194, 1885, 1993, 2273, 2326
SfcI	CTRYAG	2 cut(s)	355, 1956
SinI	GGWCC	1 cut(s)	2323
SmiMI	CAYNNNNRTG	4 cut(s)	937, 979, 1124, 2001
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
SsiI	CCGC	6 cut(s)	139, 158, 185, 2245, 2326, 2474
SspI	AATATT	1 cut(s)	1161
SspMI	CTAG	4 cut(s)	203, 1559, 2544, 2659
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	4 cut(s)	1984, 2331, 2423, 2648
StyI	CCWWGG	5 cut(s)	213, 819, 960, 1447, 2625
TaaI	ACNGT	8 cut(s)	9, 408, 565, 848, 916, 1615, 1843, 2167
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	7 cut(s)	114, 120, 230, 237, 627, 1122, 1389
TatI	WGTACW	4 cut(s)	362, 741, 1950, 2572
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	5 cut(s)	286, 351, 1073, 1109, 1754
Tru1I	TTAA	3 cut(s)	1089, 2064, 2580
Tru9I	TTAA	3 cut(s)	1089, 2064, 2580
TscAI	CASTG	3 cut(s)	944, 1251, 2464
TseFI	GTSAC	2 cut(s)	3, 1242
Tsp45I	GTSAC	2 cut(s)	3, 1242
TspGWI	ACGGA	5 cut(s)	94, 160, 255, 429, 880
TspRI	CASTG	3 cut(s)	944, 1251, 2464
Tth111I	GACNNNGTC	2 cut(s)	80, 125
Van91I	CCANNNNNTGG	1 cut(s)	966
Vha464I	CTTAAG	1 cut(s)	1088
VpaK11BI	GGWCC	1 cut(s)	2323
VspI	ATTAAT	1 cut(s)	2064
XagI	CCTNNNNNAGG	2 cut(s)	1237, 1313
XapI	RAATTY	6 cut(s)	35, 327, 704, 1348, 1553, 1852
XceI	RCATGY	3 cut(s)	526, 1271, 1597
XmiI	GTMKAC	2 cut(s)	237, 593
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	4 cut(s)	203, 1559, 2544, 2659
ZrmI	AGTACT	1 cut(s)	1952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.