Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

17646553 .. 17647963

Gene Structure 1411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1171400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTTCATCCAAGTTTTGTTCACCAGCTCTCGAGGCCAAAATGTGGCAATTACTCAATTCGAACCTGTAGATGCATGGTGGAGCTTTCCATGTTGCGATGAACCTGCTCTGAAGGACACTTTCAAGATAGCAGTAGATGTTCCACTGGAGCTGACAGCTTTATCCAATATGCCAATTGTCAATGAGAAGCTTGATGCAAATATACTTCCAACGTCATACTTTCTCCCCAAACTCGATGTGGTTGTGGTTCCTCAATTTTCTGGTGGGGCAATGGAGAATTATGGTTTGATCACATATTGTGAAAATGAACTGCTTTATGATCCTTTGCATTCCACGATGGCAAGGAAGCAAAGAATAAGTTTAATTTCTAATTCCACTTTAAGCTTTGTTGCACTTTTGCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

136

Amino Acids

15.1

Weight (kDa)

4.53

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	11 - 67	2.3e-15	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	66 - 120	3.2e-13	Peptidase family M1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	43
AclWI	GGATC	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	1 cut(s)	124
AluBI	AGCT	6 cut(s)	27, 84, 151, 158, 190, 384
AluI	AGCT	6 cut(s)	27, 84, 151, 158, 190, 384
AlwI	GGATC	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	30
AoxI	GGCC	1 cut(s)	34
AsuHPI	GGTGA	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	60
AvaI	CYCGRG	1 cut(s)	30
BccI	CCATC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BclI	TGATCA	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	30
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	2 cut(s)	61, 184
BpmI	CTGGAG	1 cut(s)	167
Bpu14I	TTCGAA	1 cut(s)	60
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	1 cut(s)	150
Bse3DI	GCAATG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	6
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	36
BsiHKCI	CYCGRG	1 cut(s)	30
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	30
Bsp119I	TTCGAA	1 cut(s)	60
Bsp143I	GATC	2 cut(s)	288, 319
BspANI	GGCC	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	249
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	1 cut(s)	314
BspT104I	TTCGAA	1 cut(s)	60
BsrDI	GCAATG	1 cut(s)	276
BsrI	ACTGG	1 cut(s)	150
BssMI	GATC	2 cut(s)	288, 319
BstBI	TTCGAA	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	6
BstKTI	GATC	2 cut(s)	291, 322
BstMBI	GATC	2 cut(s)	288, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	33
BstSFI	CTRYAG	1 cut(s)	66
BsuRI	GGCC	1 cut(s)	36
BtgZI	GCGATG	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	6
BtsIMutI	CAGTG	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	112
CviAII	CATG	2 cut(s)	75, 90
CviJI	RGCY	7 cut(s)	27, 36, 84, 151, 158, 190, 384
CviKI_1	RGCY	7 cut(s)	27, 36, 84, 151, 158, 190, 384
DpnI	GATC	2 cut(s)	290, 321
DpnII	GATC	2 cut(s)	288, 319
Eco57I	CTGAAG	1 cut(s)	131
Eco88I	CYCGRG	1 cut(s)	30
EcoT22I	ATGCAT	1 cut(s)	76
FaeI	CATG	2 cut(s)	78, 93
FaiI	YATR	8 cut(s)	76, 91, 170, 203, 217, 282, 295, 318
FatI	CATG	2 cut(s)	74, 89
FbaI	TGATCA	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	78, 93
HindIII	AAGCTT	2 cut(s)	188, 382
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	1 cut(s)	111
Hpy188III	TCNNGA	2 cut(s)	30, 124
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	1 cut(s)	106
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	4 cut(s)	74, 197, 328, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	78, 93
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	2 cut(s)	288, 319
LmnI	GCTCC	2 cut(s)	81, 148
LpnPI	CCDG	5 cut(s)	37, 78, 117, 131, 246
LweI	GCATC	2 cut(s)	61, 184
MaeII	ACGT	1 cut(s)	212
MalI	GATC	2 cut(s)	290, 321
MboI	GATC	2 cut(s)	288, 319
MfeI	CAATTG	1 cut(s)	174
MluCI	AATT	7 cut(s)	48, 56, 174, 254, 277, 363, 370
MmeI	TCCRAC	1 cut(s)	233
MnlI	CCTC	2 cut(s)	26, 261
Mph1103I	ATGCAT	1 cut(s)	76
MseI	TTAA	2 cut(s)	362, 380
MunI	CAATTG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	328
MwoI	GCNNNNNNNGC	1 cut(s)	33
NdeII	GATC	2 cut(s)	288, 319
NlaIII	CATG	2 cut(s)	78, 93
NlaIV	GGNNCC	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	76
NspV	TTCGAA	1 cut(s)	60
PaeR7I	CTCGAG	1 cut(s)	30
PctI	GAATGC	1 cut(s)	328
PflMI	CCANNNNNTGG	1 cut(s)	43
PspN4I	GGNNCC	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	362, 380
Sau3AI	GATC	2 cut(s)	288, 319
SetI	ASST	9 cut(s)	29, 67, 86, 106, 153, 160, 192, 215, 386
SfaNI	GCATC	2 cut(s)	61, 184
SfcI	CTRYAG	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	30
SfuI	TTCGAA	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	7 cut(s)	48, 56, 174, 254, 277, 363, 370
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	31, 60, 234
TasI	AATT	7 cut(s)	48, 56, 174, 254, 277, 363, 370
Tru1I	TTAA	2 cut(s)	362, 380
Tru9I	TTAA	2 cut(s)	362, 380
TscAI	CASTG	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	114, 321
TspRI	CASTG	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XhoI	CTCGAG	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.