Aminopeptidase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Peptidase_M1_N | PF17900 | 22 - 71 | 8.7e-06 | Peptidase M1 N-terminal domain |
| Peptidase_M1_N | PF17900 | 85 - 159 | 4.4e-26 | Peptidase M1 N-terminal domain |
| Peptidase_M1 | PF01433 | 194 - 410 | 2e-83 | Peptidase family M1 domain |
| ERAP1_C | PF11838 | 496 - 814 | 1.3e-74 | ERAP1-like C-terminal domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1734 |
| Acc36I | ACCTGC | 4 cut(s) | 340, 1304, 1882, 2501 |
| AccB1I | GGYRCC | 1 cut(s) | 119 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1847 |
| AccI | GTMKAC | 1 cut(s) | 1680 |
| AciI | CCGC | 3 cut(s) | 668, 1976, 2000 |
| AclI | AACGTT | 1 cut(s) | 135 |
| AclWI | GGATC | 4 cut(s) | 737, 1069, 1281, 2272 |
| AcoI | YGGCCR | 3 cut(s) | 220, 894, 1909 |
| AcsI | RAATTY | 8 cut(s) | 52, 578, 677, 1286, 1384, 1598, 2109, 2375 |
| AcuI | CTGAAG | 2 cut(s) | 1846, 2438 |
| AfaI | GTAC | 6 cut(s) | 369, 641, 1008, 1845, 1867, 2089 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 967, 1847, 2446, 2526 |
| AflIII | ACRYGT | 1 cut(s) | 1469 |
| AhlI | ACTAGT | 1 cut(s) | 2494 |
| AjnI | CCWGG | 2 cut(s) | 975, 1846 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1376, 1408 |
| AleI | CACNNNNGTG | 1 cut(s) | 811 |
| Alw26I | GTCTC | 7 cut(s) | 146, 936, 1205, 1369, 1460, 2319, 2519 |
| AlwI | GGATC | 4 cut(s) | 737, 1069, 1281, 2272 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1306, 1847 |
| AoxI | GGCC | 8 cut(s) | 34, 220, 493, 690, 894, 958, 1758, 1909 |
| ApeKI | GCWGC | 4 cut(s) | 761, 1081, 1547, 2003 |
| ApoI | RAATTY | 8 cut(s) | 52, 578, 677, 1286, 1384, 1598, 2109, 2375 |
| AseI | ATTAAT | 1 cut(s) | 408 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 2109, 2168 |
| AspLEI | GCGC | 1 cut(s) | 2468 |
| AspS9I | GGNCC | 2 cut(s) | 690, 2272 |
| AsuC2I | CCSGG | 1 cut(s) | 2390 |
| AsuHPI | GGTGA | 4 cut(s) | 199, 1109, 2275, 2302 |
| AsuII | TTCGAA | 1 cut(s) | 288 |
| AsuNHI | GCTAGC | 1 cut(s) | 1543 |
| AvaII | GGWCC | 1 cut(s) | 2272 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2136, 2169 |
| BalI | TGGCCA | 2 cut(s) | 896, 1911 |
| BanI | GGYRCC | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 2532 |
| BbsI | GAAGAC | 1 cut(s) | 2121 |
| BbvI | GCAGC | 4 cut(s) | 773, 1068, 1559, 1990 |
| BccI | CCATC | 6 cut(s) | 379, 416, 521, 1213, 1666, 1769 |
| BceAI | ACGGC | 3 cut(s) | 235, 622, 2220 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 854, 888 |
| BciT130I | CCWGG | 2 cut(s) | 977, 1848 |
| BclI | TGATCA | 2 cut(s) | 502, 711 |
| BcnI | CCSGG | 1 cut(s) | 2390 |
| BcoDI | GTCTC | 7 cut(s) | 146, 936, 1205, 1369, 1460, 2319, 2519 |
| BcuI | ACTAGT | 1 cut(s) | 2494 |
| BfaI | CTAG | 6 cut(s) | 38, 303, 345, 1544, 2495, 2533 |
| BfmI | CTRYAG | 2 cut(s) | 1082, 1986 |
| BfuAI | ACCTGC | 4 cut(s) | 340, 1304, 1882, 2501 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 689 |
| BglII | AGATCT | 1 cut(s) | 1426 |
| BisI | GCNGC | 5 cut(s) | 762, 1082, 1548, 2001, 2004 |
| BlsI | GCNGC | 5 cut(s) | 763, 1083, 1549, 2002, 2005 |
| Bme1390I | CCNGG | 3 cut(s) | 977, 1848, 2390 |
| Bme18I | GGWCC | 1 cut(s) | 2272 |
| BmgT120I | GGNCC | 2 cut(s) | 690, 2272 |
| BmiI | GGNNCC | 5 cut(s) | 121, 672, 691, 1839, 2273 |
| BmrFI | CCNGG | 3 cut(s) | 977, 1848, 2390 |
| BmrI | ACTGGG | 2 cut(s) | 2278, 2535 |
| BmsI | GCATC | 8 cut(s) | 150, 289, 299, 961, 1030, 1606, 1806, 2404 |
| BmtI | GCTAGC | 1 cut(s) | 1547 |
| BmuI | ACTGGG | 2 cut(s) | 2278, 2535 |
| BpiI | GAAGAC | 1 cut(s) | 2121 |
| BpmI | CTGGAG | 3 cut(s) | 1869, 2118, 2503 |
| Bpu14I | TTCGAA | 1 cut(s) | 288 |
| BpuEI | CTTGAG | 1 cut(s) | 323 |
| BpuMI | CCSGG | 1 cut(s) | 2390 |
| Bsa29I | ATCGAT | 1 cut(s) | 1942 |
| BsaBI | GATNNNNATC | 2 cut(s) | 81, 192 |
| BsaI | GGTCTC | 4 cut(s) | 146, 936, 1205, 2519 |
| BsaJI | CCNNGG | 2 cut(s) | 693, 975 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 967, 1847, 2446, 2526 |
| Bse118I | RCCGGY | 1 cut(s) | 683 |
| Bse1I | ACTGG | 6 cut(s) | 958, 1346, 1407, 1841, 2273, 2530 |
| Bse3DI | GCAATG | 2 cut(s) | 2010, 2356 |
| Bse8I | GATNNNNATC | 2 cut(s) | 81, 192 |
| BseBI | CCWGG | 2 cut(s) | 977, 1848 |
| BseCI | ATCGAT | 1 cut(s) | 1942 |
| BseDI | CCNNGG | 2 cut(s) | 693, 975 |
| BseGI | GGATG | 9 cut(s) | 304, 331, 976, 988, 1228, 1618, 1681, 1761, 2395 |
| BseJI | GATNNNNATC | 2 cut(s) | 81, 192 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 967, 1847, 2446, 2526 |
| BseMI | GCAATG | 2 cut(s) | 2010, 2356 |
| BseMII | CTCAG | 2 cut(s) | 906, 1937 |
| BseNI | ACTGG | 6 cut(s) | 958, 1346, 1407, 1841, 2273, 2530 |
| BseRI | GAGGAG | 1 cut(s) | 1796 |
| BseXI | GCAGC | 4 cut(s) | 773, 1068, 1559, 1990 |
| BseYI | CCCAGC | 1 cut(s) | 1833 |
| BsgI | GTGCAG | 2 cut(s) | 91, 146 |
| BshFI | GGCC | 8 cut(s) | 36, 222, 495, 692, 896, 960, 1760, 1911 |
| BshNI | GGYRCC | 1 cut(s) | 119 |
| BshVI | ATCGAT | 1 cut(s) | 1942 |
| BsiSI | CCGG | 3 cut(s) | 117, 684, 2389 |
| BslFI | GGGAC | 1 cut(s) | 2285 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 967, 1847, 2446, 2526 |
| BsmAI | GTCTC | 7 cut(s) | 146, 936, 1205, 1369, 1460, 2319, 2519 |
| BsmBI | CGTCTC | 2 cut(s) | 1369, 2319 |
| BsmFI | GGGAC | 1 cut(s) | 2285 |
| BsmI | GAATGC | 5 cut(s) | 236, 751, 1083, 2032, 2237 |
| BsnI | GGCC | 8 cut(s) | 36, 222, 495, 692, 896, 960, 1760, 1911 |
| Bso31I | GGTCTC | 4 cut(s) | 146, 936, 1205, 2519 |
| Bsp119I | TTCGAA | 1 cut(s) | 288 |
| Bsp1286I | GDGCHC | 1 cut(s) | 2532 |
| Bsp19I | CCATGG | 1 cut(s) | 693 |
| BspACI | CCGC | 3 cut(s) | 668, 1976, 2000 |
| BspANI | GGCC | 8 cut(s) | 36, 222, 495, 692, 896, 960, 1760, 1911 |
| BspCNI | CTCAG | 2 cut(s) | 907, 1936 |
| BspDI | ATCGAT | 1 cut(s) | 1942 |
| BspLI | GGNNCC | 5 cut(s) | 121, 672, 691, 1839, 2273 |
| BspMAI | CTGCAG | 2 cut(s) | 1086, 1990 |
| BspMI | ACCTGC | 4 cut(s) | 340, 1304, 1882, 2501 |
| BspOI | GCTAGC | 1 cut(s) | 1547 |
| BspPI | GGATC | 4 cut(s) | 737, 1069, 1281, 2272 |
| BspT104I | TTCGAA | 1 cut(s) | 288 |
| BspT107I | GGYRCC | 1 cut(s) | 119 |
| BspTNI | GGTCTC | 4 cut(s) | 146, 936, 1205, 2519 |
| BsrDI | GCAATG | 2 cut(s) | 2010, 2356 |
| BsrFI | RCCGGY | 1 cut(s) | 683 |
| BsrI | ACTGG | 6 cut(s) | 958, 1346, 1407, 1841, 2273, 2530 |
| BssAI | RCCGGY | 1 cut(s) | 683 |
| BssECI | CCNNGG | 2 cut(s) | 693, 975 |
| BssNAI | GTATAC | 1 cut(s) | 1681 |
| BssT1I | CCWWGG | 1 cut(s) | 693 |
| Bst1107I | GTATAC | 1 cut(s) | 1681 |
| Bst2UI | CCWGG | 2 cut(s) | 977, 1848 |
| Bst4CI | ACNGT | 9 cut(s) | 124, 439, 722, 1302, 1485, 1647, 2092, 2149, 2340 |
| Bst6I | CTCTTC | 3 cut(s) | 144, 557, 2490 |
| BstBI | TTCGAA | 1 cut(s) | 288 |
| BstC8I | GCNNGC | 4 cut(s) | 106, 1086, 1545, 2032 |
| BstDEI | CTNAG | 5 cut(s) | 915, 1233, 1556, 1923, 2227 |
| BstDSI | CCRYGG | 1 cut(s) | 693 |
| BstEII | GGTNACC | 1 cut(s) | 45 |
| BstF5I | GGATG | 9 cut(s) | 304, 331, 976, 988, 1228, 1618, 1681, 1761, 2395 |
| BstHHI | GCGC | 1 cut(s) | 2468 |
| BstMAI | GTCTC | 7 cut(s) | 146, 936, 1205, 1369, 1460, 2319, 2519 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 299, 341, 689, 2012, 2232 |
| BstNI | CCWGG | 2 cut(s) | 977, 1848 |
| BstNSI | RCATGY | 1 cut(s) | 1473 |
| BstPI | GGTNACC | 1 cut(s) | 45 |
| BstSCI | CCNGG | 3 cut(s) | 975, 1846, 2388 |
| BstSFI | CTRYAG | 2 cut(s) | 1082, 1986 |
| BstV1I | GCAGC | 4 cut(s) | 773, 1068, 1559, 1990 |
| BstV2I | GAAGAC | 1 cut(s) | 2121 |
| BstX2I | RGATCY | 2 cut(s) | 1061, 1426 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1414 |
| BstYI | RGATCY | 2 cut(s) | 1061, 1426 |
| BstZ17I | GTATAC | 1 cut(s) | 1681 |
| Bsu15I | ATCGAT | 1 cut(s) | 1942 |
| BsuRI | GGCC | 8 cut(s) | 36, 222, 495, 692, 896, 960, 1760, 1911 |
| BsuTUI | ATCGAT | 1 cut(s) | 1942 |
| BtgI | CCRYGG | 1 cut(s) | 693 |
| BtgZI | GCGATG | 1 cut(s) | 322 |
| BtsCI | GGATG | 9 cut(s) | 304, 331, 976, 988, 1228, 1618, 1681, 1761, 2395 |
| BtsI | GCAGTG | 1 cut(s) | 1983 |
| BtsIMutI | CAGTG | 7 cut(s) | 818, 897, 1216, 1414, 1779, 1983, 2097 |
| BveI | ACCTGC | 4 cut(s) | 340, 1304, 1882, 2501 |
| Cac8I | GCNNGC | 4 cut(s) | 106, 1086, 1545, 2032 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1306, 1847 |
| CfoI | GCGC | 1 cut(s) | 2468 |
| Cfr10I | RCCGGY | 1 cut(s) | 683 |
| Cfr13I | GGNCC | 2 cut(s) | 690, 2272 |
| ClaI | ATCGAT | 1 cut(s) | 1942 |
| CseI | GACGC | 2 cut(s) | 1386, 2115 |
| Csp6I | GTAC | 6 cut(s) | 368, 640, 1007, 1844, 1866, 2088 |
| CviAII | CATG | 8 cut(s) | 463, 694, 797, 879, 1470, 1810, 1913, 2247 |
| CviQI | GTAC | 6 cut(s) | 368, 640, 1007, 1844, 1866, 2088 |
| DdeI | CTNAG | 5 cut(s) | 915, 1233, 1556, 1923, 2227 |
| DraI | TTTAAA | 3 cut(s) | 31, 588, 1455 |
| EaeI | YGGCCR | 3 cut(s) | 220, 894, 1909 |
| Eam1104I | CTCTTC | 3 cut(s) | 144, 557, 2490 |
| EarI | CTCTTC | 3 cut(s) | 144, 557, 2490 |
| Eco130I | CCWWGG | 1 cut(s) | 693 |
| Eco147I | AGGCCT | 1 cut(s) | 36 |
| Eco24I | GRGCYC | 1 cut(s) | 2532 |
| Eco31I | GGTCTC | 4 cut(s) | 146, 936, 1205, 2519 |
| Eco32I | GATATC | 1 cut(s) | 1247 |
| Eco47I | GGWCC | 1 cut(s) | 2272 |
| Eco57I | CTGAAG | 2 cut(s) | 1846, 2438 |
| Eco91I | GGTNACC | 1 cut(s) | 45 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2272 |
| EcoO65I | GGTNACC | 1 cut(s) | 45 |
| EcoRI | GAATTC | 1 cut(s) | 2109 |
| EcoRII | CCWGG | 2 cut(s) | 975, 1846 |
| EcoRV | GATATC | 1 cut(s) | 1247 |
| EcoT14I | CCWWGG | 1 cut(s) | 693 |
| EcoT22I | ATGCAT | 1 cut(s) | 1621 |
| EcoT38I | GRGCYC | 1 cut(s) | 2532 |
| ErhI | CCWWGG | 1 cut(s) | 693 |
| Esp3I | CGTCTC | 2 cut(s) | 1369, 2319 |
| FaeI | CATG | 8 cut(s) | 466, 697, 800, 882, 1473, 1813, 1916, 2250 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2036, 2068 |
| FaqI | GGGAC | 1 cut(s) | 2285 |
| FatI | CATG | 8 cut(s) | 462, 693, 796, 878, 1469, 1809, 1912, 2246 |
| FauNDI | CATATG | 1 cut(s) | 1369 |
| FbaI | TGATCA | 2 cut(s) | 502, 711 |
| FblI | GTMKAC | 1 cut(s) | 1680 |
| Fnu4HI | GCNGC | 5 cut(s) | 762, 1082, 1548, 2001, 2004 |
| FokI | GGATG | 9 cut(s) | 311, 338, 975, 983, 1235, 1625, 1688, 1748, 2382 |
| FriOI | GRGCYC | 1 cut(s) | 2532 |
| Fsp4HI | GCNGC | 5 cut(s) | 762, 1082, 1548, 2001, 2004 |
| FspBI | CTAG | 6 cut(s) | 38, 303, 345, 1544, 2495, 2533 |
| GlaI | GCGC | 1 cut(s) | 2467 |
| GluI | GCNGC | 5 cut(s) | 762, 1082, 1548, 2001, 2004 |
| GsaI | CCCAGC | 1 cut(s) | 1837 |
| GsuI | CTGGAG | 3 cut(s) | 1869, 2118, 2503 |
| HaeIII | GGCC | 8 cut(s) | 36, 222, 495, 692, 896, 960, 1760, 1911 |
| HapII | CCGG | 3 cut(s) | 117, 684, 2389 |
| HgaI | GACGC | 2 cut(s) | 1386, 2115 |
| HhaI | GCGC | 1 cut(s) | 2468 |
| Hin1II | CATG | 8 cut(s) | 466, 697, 800, 882, 1473, 1813, 1916, 2250 |
| Hin6I | GCGC | 1 cut(s) | 2466 |
| HinP1I | GCGC | 1 cut(s) | 2466 |
| HincII | GTYRAC | 2 cut(s) | 468, 1435 |
| HindII | GTYRAC | 2 cut(s) | 468, 1435 |
| HindIII | AAGCTT | 2 cut(s) | 1635, 2224 |
| HinfI | GANTC | 9 cut(s) | 348, 452, 1193, 1769, 1855, 2057, 2211, 2413, 2442 |
| HpaII | CCGG | 3 cut(s) | 117, 684, 2389 |
| HphI | GGTGA | 4 cut(s) | 199, 1109, 2275, 2302 |
| HpyAV | CCTTC | 7 cut(s) | 121, 1322, 1555, 2042, 2095, 2254, 2409 |
| HpyCH4III | ACNGT | 9 cut(s) | 124, 439, 722, 1302, 1485, 1647, 2092, 2149, 2340 |
| HpyCH4IV | ACGT | 5 cut(s) | 135, 1018, 1725, 2116, 2328 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 299, 341, 689, 2012, 2232 |
| HpyF3I | CTNAG | 5 cut(s) | 915, 1233, 1556, 1923, 2227 |
| HpySE526I | ACGT | 5 cut(s) | 135, 1018, 1725, 2116, 2328 |
| Hsp92II | CATG | 8 cut(s) | 466, 697, 800, 882, 1473, 1813, 1916, 2250 |
| HspAI | GCGC | 1 cut(s) | 2466 |
| Ksp22I | TGATCA | 2 cut(s) | 502, 711 |
| LmnI | GCTCC | 1 cut(s) | 2476 |
| Lsp1109I | GCAGC | 4 cut(s) | 773, 1068, 1559, 1990 |
| LweI | GCATC | 8 cut(s) | 150, 289, 299, 961, 1030, 1606, 1806, 2404 |
| MaeI | CTAG | 6 cut(s) | 38, 303, 345, 1544, 2495, 2533 |
| MaeII | ACGT | 5 cut(s) | 135, 1018, 1725, 2116, 2328 |
| MfeI | CAATTG | 1 cut(s) | 783 |
| MflI | RGATCY | 2 cut(s) | 1061, 1426 |
| MhlI | GDGCHC | 1 cut(s) | 2532 |
| MlsI | TGGCCA | 2 cut(s) | 896, 1911 |
| MluNI | TGGCCA | 2 cut(s) | 896, 1911 |
| MlyI | GAGTC | 4 cut(s) | 1864, 2066, 2205, 2407 |
| MmeI | TCCRAC | 1 cut(s) | 1167 |
| Mox20I | TGGCCA | 2 cut(s) | 896, 1911 |
| Mph1103I | ATGCAT | 1 cut(s) | 1621 |
| MroXI | GAANNNNTTC | 2 cut(s) | 2109, 2168 |
| MscI | TGGCCA | 2 cut(s) | 896, 1911 |
| MslI | CAYNNNNRTG | 2 cut(s) | 811, 2251 |
| Msp20I | TGGCCA | 2 cut(s) | 896, 1911 |
| MspA1I | CMGCKG | 1 cut(s) | 379 |
| MspI | CCGG | 3 cut(s) | 117, 684, 2389 |
| MspR9I | CCNGG | 3 cut(s) | 977, 1848, 2390 |
| MunI | CAATTG | 1 cut(s) | 783 |
| Mva1269I | GAATGC | 5 cut(s) | 236, 751, 1083, 2032, 2237 |
| MvaI | CCWGG | 2 cut(s) | 977, 1848 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 299, 341, 689, 2012, 2232 |
| NciI | CCSGG | 1 cut(s) | 2390 |
| NcoI | CCATGG | 1 cut(s) | 693 |
| NdeI | CATATG | 1 cut(s) | 1369 |
| NheI | GCTAGC | 1 cut(s) | 1543 |
| NlaIII | CATG | 8 cut(s) | 466, 697, 800, 882, 1473, 1813, 1916, 2250 |
| NlaIV | GGNNCC | 5 cut(s) | 121, 672, 691, 1839, 2273 |
| NmuCI | GTSAC | 3 cut(s) | 1647, 1856, 2058 |
| NsiI | ATGCAT | 1 cut(s) | 1621 |
| NspI | RCATGY | 1 cut(s) | 1473 |
| NspV | TTCGAA | 1 cut(s) | 288 |
| OliI | CACNNNNGTG | 1 cut(s) | 811 |
| PceI | AGGCCT | 1 cut(s) | 36 |
| PciI | ACATGT | 1 cut(s) | 1469 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 141, 2113, 2325 |
| PctI | GAATGC | 5 cut(s) | 236, 751, 1083, 2032, 2237 |
| PdmI | GAANNNNTTC | 2 cut(s) | 2109, 2168 |
| PfeI | GAWTC | 5 cut(s) | 348, 452, 1193, 1769, 2442 |
| PflFI | GACNNNGTC | 1 cut(s) | 439 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1847 |
| PkrI | GCNGC | 5 cut(s) | 763, 1083, 1549, 2002, 2005 |
| PleI | GAGTC | 4 cut(s) | 1863, 2065, 2205, 2407 |
| PpsI | GAGTC | 4 cut(s) | 1863, 2065, 2205, 2407 |
| PpuMI | RGGWCCY | 1 cut(s) | 2272 |
| PscI | ACATGT | 1 cut(s) | 1469 |
| PshBI | ATTAAT | 1 cut(s) | 408 |
| PsiI | TTATAA | 1 cut(s) | 1734 |
| Psp1406I | AACGTT | 1 cut(s) | 135 |
| Psp5II | RGGWCCY | 1 cut(s) | 2272 |
| Psp6I | CCWGG | 2 cut(s) | 975, 1846 |
| PspEI | GGTNACC | 1 cut(s) | 45 |
| PspFI | CCCAGC | 1 cut(s) | 1833 |
| PspGI | CCWGG | 2 cut(s) | 975, 1846 |
| PspN4I | GGNNCC | 5 cut(s) | 121, 672, 691, 1839, 2273 |
| PspPI | GGNCC | 2 cut(s) | 690, 2272 |
| PspPPI | RGGWCCY | 1 cut(s) | 2272 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2097, 2129 |
| PstI | CTGCAG | 2 cut(s) | 1086, 1990 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1306, 1847 |
| PsuI | RGATCY | 2 cut(s) | 1061, 1426 |
| PsyI | GACNNNGTC | 1 cut(s) | 439 |
| PvuII | CAGCTG | 1 cut(s) | 379 |
| RsaI | GTAC | 6 cut(s) | 369, 641, 1008, 1845, 1867, 2089 |
| RsaNI | GTAC | 6 cut(s) | 368, 640, 1007, 1844, 1866, 2088 |
| RseI | CAYNNNNRTG | 2 cut(s) | 811, 2251 |
| SatI | GCNGC | 5 cut(s) | 762, 1082, 1548, 2001, 2004 |
| Sau96I | GGNCC | 2 cut(s) | 690, 2272 |
| SchI | GAGTC | 4 cut(s) | 1864, 2066, 2205, 2407 |
| ScrFI | CCNGG | 3 cut(s) | 977, 1848, 2390 |
| SduI | GDGCHC | 1 cut(s) | 2532 |
| SfaNI | GCATC | 8 cut(s) | 150, 289, 299, 961, 1030, 1606, 1806, 2404 |
| SfcI | CTRYAG | 2 cut(s) | 1082, 1986 |
| SfuI | TTCGAA | 1 cut(s) | 288 |
| SinI | GGWCC | 1 cut(s) | 2272 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 811, 2251 |
| SmlI | CTYRAG | 1 cut(s) | 338 |
| SmoI | CTYRAG | 1 cut(s) | 338 |
| SpeI | ACTAGT | 1 cut(s) | 2494 |
| SseBI | AGGCCT | 1 cut(s) | 36 |
| SsiI | CCGC | 3 cut(s) | 668, 1976, 2000 |
| SspI | AATATT | 1 cut(s) | 1035 |
| SspMI | CTAG | 6 cut(s) | 38, 303, 345, 1544, 2495, 2533 |
| StuI | AGGCCT | 1 cut(s) | 36 |
| StyD4I | CCNGG | 3 cut(s) | 975, 1846, 2388 |
| StyI | CCWWGG | 1 cut(s) | 693 |
| TaaI | ACNGT | 9 cut(s) | 124, 439, 722, 1302, 1485, 1647, 2092, 2149, 2340 |
| TaiI | ACGT | 5 cut(s) | 138, 1021, 1728, 2119, 2331 |
| TaqI | TCGA | 6 cut(s) | 288, 1038, 1503, 1552, 1942, 2188 |
| TatI | WGTACW | 1 cut(s) | 1865 |
| TauI | GCSGC | 1 cut(s) | 2003 |
| TfiI | GAWTC | 5 cut(s) | 348, 452, 1193, 1769, 2442 |
| TscAI | CASTG | 7 cut(s) | 818, 904, 1216, 1414, 1779, 1990, 2097 |
| TseFI | GTSAC | 3 cut(s) | 1647, 1856, 2058 |
| TseI | GCWGC | 4 cut(s) | 761, 1081, 1547, 2003 |
| Tsp45I | GTSAC | 3 cut(s) | 1647, 1856, 2058 |
| TspRI | CASTG | 7 cut(s) | 818, 904, 1216, 1414, 1779, 1990, 2097 |
| Tth111I | GACNNNGTC | 1 cut(s) | 439 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1847 |
| VpaK11BI | GGWCC | 1 cut(s) | 2272 |
| VspI | ATTAAT | 1 cut(s) | 408 |
| XapI | RAATTY | 8 cut(s) | 52, 578, 677, 1286, 1384, 1598, 2109, 2375 |
| XceI | RCATGY | 1 cut(s) | 1473 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 658 |
| XmiI | GTMKAC | 1 cut(s) | 1680 |
| XmnI | GAANNNNTTC | 2 cut(s) | 2109, 2168 |
| XspI | CTAG | 6 cut(s) | 38, 303, 345, 1544, 2495, 2533 |
| Zsp2I | ATGCAT | 1 cut(s) | 1621 |