Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

1411089 .. 1417088

Gene Structure 6000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010411

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2658 bp

ATGGCGGAGCAGTTCAAAGGCCAACCCCGCCTTCCCAAATTCGCCGTCCCCAAACGCTACGACGTTAGCCTCAAACCGGACCTCGCCGCCTGCAAATTCGCCGGTTCCGTCGCCATCGATCTCGATATCGTCTCCGATACCAGCTTCATCGTCCTCAACGCCGCCGAGCTCGCCGTCGACACCGCTTCCGTCTCTTTCACTCACAAAAACTCTTCAAAGGTTTTCAAGCCTTTGAAAGCCGAGACATTCGAAGAAGATGGCATTTTGGTTTTGGAGTTTGGCGAGACACTTCCGACTGGGCCAGGAGTTTTGGCCATTGGATTTGAAGGAATTTTGAATGACAAGATGAAGGGATTCTATAGAAGTACATATGAGCATAATGGCGAGAAGAAAAATATGGCAGTGACCCAGTTTGAACCTGTTGATGCCAGGAAGTGCTTTCCATGTTGGGACGAACCTGCTTGGAAGGCTACATTCAAGATTACATTGGATGGTGTTCCATCTGAATTAGTAGCCCTCTCCAACATGCCGGTTGTTGAAGAAAAAGTGGATGGACATCTGAAGACAGTTTCATATCAGGAGACACCAATTATGTCTACATATTTAGTGGCCGTTGTTGTCGGATTGTTTGACTATGTTGAAGATCATACATCAGATGGAGTTAAAGTGCGCGTATATTGTCAAGTTGGTAAAGCAAACCAAGGGAAACTTGCTTTGAACGTTGCTGTCAAAACACTTGAACTGTACAAAGAATACTTTGCTGTACCATACCCTTTGCCCAAATTGGATATGGTTGCAATTCCTGATTTTTCTGCTGGGGCCATGGAGAATTATGGTTTAGTTACATACCGTGAAACAGCTTTGCTCTTTGATGAACAGCACTCTGCAGCTGCCAACAAGCAAAGGGTTGCAACTGTGGTGGCACATGAATTGGCCCACCAGTGGTTTGGAAATCTTGTAACAATGGAATGGTGGACACATTTATGGCTGAATGAGGGATTTGCAACTTGGGTGAGCTATTTAGCTGCTGATAGCCTATTCCCTGAATGGAAAGTATGGACTCAGTTTCTTGATGAATCAACTGAAGGTCTTAGGCTGGATGGGCTCGAAGAATCTCACCCTATCGAGGTGGAGATAAATCATGCTTGTGAGGTGGATGAAATATTTGATGCTATAAGCTATAGGAAAGGTGCTTCTGTTATTCGGATGCTACAAAGCTATCTTGGTGCTGAACCCTTTCAGAGGTCACTTGCTTCATATATAAAAAAGCATGCCTACTCGAATGCAAAAACAGAAGATCTATGGGCTGCCCTGGAGGAGGGATCTGGTGAACCTGTGAACAAGCTAATGAATTCATGGACAAAGCAACAAGGTTACCCAGTTGTGTCCGTCAAGGTCAAAGATCAGAAATTGGAGTTTGAACAGACACAATTCTTGTCAAGTGGTTCTGAAGGCACTGGGCAATGGATCGTGCCGTTAACATTATGCTGTGGCTCATATGATGTACGCAAAAGTTTCCTACTACAAACAAAGTCCGAAAGTCTGGATGTAAAGGAATTTCTGGGTTGCTCAGTAGCGGAGACTGGAAGCACATGCAATAAAAACAATGGACAATGTGGTTGGATAAAGCTCAATGTGGATCAGGCGGGTTTTTACAGGGTGAAATATGATGATGAACTTGCAGCTCAATTAAGAAATGCGATAGAGAAGAAATACTTGTCTGCAACTGACAGATATGGCATCTTGGATGATGCAGCTGCCCTCACTACGGCTCGCAAGCAGTCTTTTGCCTCCTTGCTTACCTTGTTGGGTGCTTACAGAGAGGAACTTGACTACACAGTGCTTTCAAATCTGATTACTGTAAGTTATAAGCTGAAAAGAATTGCTGATGATGCTGTACCCGAGCTAGTGGATCTCCTTAATCAGTTCTTTATTGGCCTTCTCCAGTACCCTGCAGAGAAGCTTGGTTGGCAACCAAAACCGGGCGAGAGCCATTTAGATGCAATGTTGAGAGGAGAACTTTTGACCGCCCTTGCTTCATTTGGACATGATCTAACAATTGATGAAGCAATCAGGCGGTTTAATGCCTTCTTAGATGACAGAAATACATCATTCCTTCCTCCTGACATAAGAAAGGCAGCATATGTGGCTGTAATGCAACGAGTAACTGCATCTAACAGATCGGGCTATGAATCTCTTCTTAGAGTTTACAGAGAGACTGATCTAAGCCAGGAGAAGACCCGCATTTTAGGTTCACTAGCATCGTGTCCAGATCCTGACATAATACTTGAAGTTCTCAACTTTTTGTTGACTAAAGAGGTTCGTAGTCAGGATGCTGTCTTTGGACTAGCTGTTGGTAGTGAAGGACGAGAAACAGCTTGGACGTGGCTGAAGAATAACTGGGAGCACATCTCTAAGACCTGGGGTTCTGGATTTCTGATTACTCGCTTTGTCAGTGCAGCTGTCTCACATTTTGCTTCCTTAGATAAGGTAAAGGAAGTGGAAGAGTTCTTCAAAGCTCATCCCAACTCCGCCATAACTAGAACCTTGAAGCAGAGCATCGAGCGGGTAAAGATCAACGCCAAATGGGTTGAGAGCATCCAGGGTGAGAAGAATCTTGCCGATGCTGTGACTGAGTTGGCATACAGGAAATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

886

Amino Acids

99.13

Weight (kDa)

5.35

Isoelectric Point (pI)

28.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	16 - 202	5.2e-50	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	238 - 453	7.7e-90	Peptidase family M1 domain
ERAP1_C	PF11838	541 - 858	1.3e-83	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1869
Acc36I	ACCTGC	1 cut(s)	466
AccBSI	CCGCTC	1 cut(s)	2566
AccI	GTMKAC	2 cut(s)	177, 596
AccII	CGCG	1 cut(s)	672
AclI	AACGTT	1 cut(s)	720
AclWI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
AcoI	YGGCCR	2 cut(s)	312, 609
AcsI	RAATTY	5 cut(s)	38, 95, 330, 1351, 1556
AcuI	CTGAAG	4 cut(s)	581, 1104, 1470, 2411
AfaI	GTAC	6 cut(s)	367, 746, 765, 1506, 1899, 1949
AfiI	CCNNNNNNNGG	7 cut(s)	76, 942, 1126, 1242, 1318, 1768, 1982
AjiI	CACGTC	1 cut(s)	2385
AjnI	CCWGG	6 cut(s)	301, 428, 1311, 2229, 2420, 2601
AjuI	GAANNNNNNNTTGG	2 cut(s)	15, 47
Alw21I	GWGCWC	2 cut(s)	171, 2409
Alw26I	GTCTC	8 cut(s)	136, 196, 236, 278, 575, 1574, 2210, 2470
AlwI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
AlwNI	CAGNNNCTG	1 cut(s)	2276
Ama87I	CYCGRG	1 cut(s)	1901
AoxI	GGCC	7 cut(s)	19, 299, 312, 609, 819, 933, 1936
ApeKI	GCWGC	9 cut(s)	887, 890, 1025, 1307, 1682, 1754, 1757, 2138, 2459
ApoI	RAATTY	5 cut(s)	38, 95, 330, 1351, 1556
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	3 cut(s)	353, 1236, 2196
AspLEI	GCGC	1 cut(s)	672
AspS9I	GGNCC	4 cut(s)	79, 299, 819, 934
AsuC2I	CCSGG	1 cut(s)	1983
AsuHPI	GGTGA	5 cut(s)	1024, 1109, 1340, 1672, 2618
AsuII	TTCGAA	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	1901
AvaII	GGWCC	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	314
BanII	GRGCYC	2 cut(s)	171, 1107
BbsI	GAAGAC	2 cut(s)	569, 2243
Bbv12I	GWGCWC	2 cut(s)	171, 2409
BbvI	GCAGC	9 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150, 2471
BccI	CCATC	7 cut(s)	122, 251, 485, 508, 545, 650, 1094
BceAI	ACGGC	5 cut(s)	29, 158, 596, 1459, 1785
BciT130I	CCWGG	6 cut(s)	303, 430, 1313, 2231, 2422, 2603
BcnI	CCSGG	1 cut(s)	1983
BcoDI	GTCTC	8 cut(s)	136, 196, 236, 278, 575, 1574, 2210, 2470
BfaI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
BfmI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
BfuAI	ACCTGC	1 cut(s)	466
BglII	AGATCT	1 cut(s)	1297
Bme1390I	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
Bme18I	GGWCC	1 cut(s)	79
BmeT110I	CYCGRG	1 cut(s)	1901
BmgBI	CACGTC	1 cut(s)	2385
BmgT120I	GGNCC	4 cut(s)	79, 299, 819, 934
BmiI	GGNNCC	2 cut(s)	106, 820
BmrFI	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
BmrI	ACTGGG	5 cut(s)	306, 403, 1373, 1467, 2410
BmuI	ACTGGG	5 cut(s)	306, 403, 1373, 1467, 2410
BpiI	GAAGAC	2 cut(s)	569, 2243
BplI	GAGNNNNNCTC	2 cut(s)	2396, 2428
BpmI	CTGGAG	2 cut(s)	1334, 1928
Bpu14I	TTCGAA	1 cut(s)	249
BpuMI	CCSGG	1 cut(s)	1983
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BsaWI	WCCGGW	1 cut(s)	76
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	7 cut(s)	76, 942, 1126, 1242, 1318, 1768, 1982
Bse118I	RCCGGY	2 cut(s)	101, 529
Bse1I	ACTGG	8 cut(s)	301, 409, 940, 1379, 1462, 1588, 1945, 2405
Bse3DI	GCAATG	2 cut(s)	1469, 2010
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	6 cut(s)	303, 430, 1313, 2231, 2422, 2603
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	7 cut(s)	76, 942, 1126, 1242, 1318, 1768, 1982
BseMI	GCAATG	2 cut(s)	1469, 2010
BseMII	CTCAG	3 cut(s)	1076, 1584, 2625
BseNI	ACTGG	8 cut(s)	301, 409, 940, 1379, 1462, 1588, 1945, 2405
BseRI	GAGGAG	2 cut(s)	1331, 2028
BseXI	GCAGC	9 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150, 2471
BseYI	CCCAGC	1 cut(s)	815
BsgI	GTGCAG	1 cut(s)	2478
Bsh1236I	CGCG	1 cut(s)	672
BshFI	GGCC	7 cut(s)	21, 301, 314, 611, 821, 935, 1938
BshVI	ATCGAT	1 cut(s)	117
BsiHKAI	GWGCWC	2 cut(s)	171, 2409
BsiHKCI	CYCGRG	1 cut(s)	1901
BsiSI	CCGG	4 cut(s)	77, 102, 530, 1982
BslFI	GGGAC	2 cut(s)	32, 464
BslI	CCNNNNNNNGG	7 cut(s)	76, 942, 1126, 1242, 1318, 1768, 1982
BsmAI	GTCTC	8 cut(s)	136, 196, 236, 278, 575, 1574, 2210, 2470
BsmBI	CGTCTC	2 cut(s)	136, 196
BsmFI	GGGAC	2 cut(s)	32, 464
BsmI	GAATGC	1 cut(s)	1288
BsnI	GGCC	7 cut(s)	21, 301, 314, 611, 821, 935, 1938
BsoBI	CYCGRG	1 cut(s)	1901
Bsp119I	TTCGAA	1 cut(s)	249
Bsp1286I	GDGCHC	3 cut(s)	171, 1107, 2409
Bsp1407I	TGTACA	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	822
BspANI	GGCC	7 cut(s)	21, 301, 314, 611, 821, 935, 1938
BspCNI	CTCAG	3 cut(s)	1075, 1583, 2626
BspDI	ATCGAT	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	672
BspLI	GGNNCC	2 cut(s)	106, 820
BspMAI	CTGCAG	2 cut(s)	889, 1957
BspMI	ACCTGC	1 cut(s)	466
BspPI	GGATC	5 cut(s)	1330, 1475, 1647, 1920, 2267
BspT104I	TTCGAA	1 cut(s)	249
BsrBI	CCGCTC	1 cut(s)	2566
BsrDI	GCAATG	2 cut(s)	1469, 2010
BsrFI	RCCGGY	2 cut(s)	101, 529
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	8 cut(s)	301, 409, 940, 1379, 1462, 1588, 1945, 2405
BssAI	RCCGGY	2 cut(s)	101, 529
BssECI	CCNNGG	5 cut(s)	700, 822, 1311, 2421, 2602
BssT1I	CCWWGG	2 cut(s)	700, 822
Bst2UI	CCWGG	6 cut(s)	303, 430, 1313, 2231, 2422, 2603
Bst4CI	ACNGT	6 cut(s)	568, 744, 851, 916, 1840, 1861
Bst6I	CTCTTC	3 cut(s)	217, 2202, 2499
BstAUI	TGTACA	1 cut(s)	744
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	91, 171, 1272, 1774, 1778
BstDEI	CTNAG	9 cut(s)	1062, 1091, 1570, 2092, 2201, 2225, 2415, 2482, 2634
BstDSI	CCRYGG	1 cut(s)	822
BstEII	GGTNACC	1 cut(s)	1373
BstENI	CCTNNNNNAGG	2 cut(s)	1240, 1316
BstFNI	CGCG	1 cut(s)	672
BstHHI	GCGC	1 cut(s)	672
BstMAI	GTCTC	8 cut(s)	136, 196, 236, 278, 575, 1574, 2210, 2470
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
BstNI	CCWGG	6 cut(s)	303, 430, 1313, 2231, 2422, 2603
BstNSI	RCATGY	3 cut(s)	529, 1274, 1596
BstPI	GGTNACC	1 cut(s)	1373
BstSCI	CCNGG	7 cut(s)	301, 428, 1311, 1981, 2229, 2420, 2601
BstSFI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
BstUI	CGCG	1 cut(s)	672
BstV1I	GCAGC	9 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150, 2471
BstV2I	GAAGAC	2 cut(s)	569, 2243
BstX2I	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
BstXI	CCANNNNNNTGG	1 cut(s)	947
BstYI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
Bsu15I	ATCGAT	1 cut(s)	117
BsuRI	GGCC	7 cut(s)	21, 301, 314, 611, 821, 935, 1938
BsuTUI	ATCGAT	1 cut(s)	117
BtgI	CCRYGG	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	2385
BtsI	GCAGTG	1 cut(s)	408
BtsIMutI	CAGTG	5 cut(s)	408, 947, 1455, 1845, 2461
BveI	ACCTGC	1 cut(s)	466
Cac8I	GCNNGC	5 cut(s)	91, 171, 1272, 1774, 1778
CaiI	CAGNNNCTG	1 cut(s)	2276
CfoI	GCGC	1 cut(s)	672
Cfr10I	RCCGGY	2 cut(s)	101, 529
Cfr13I	GGNCC	4 cut(s)	79, 299, 819, 934
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
CspCI	CAANNNNNGTGG	2 cut(s)	900, 935
CviAII	CATG	9 cut(s)	444, 526, 823, 926, 1142, 1271, 1356, 1593, 2048
CviQI	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
DdeI	CTNAG	9 cut(s)	1062, 1091, 1570, 2092, 2201, 2225, 2415, 2482, 2634
EaeI	YGGCCR	2 cut(s)	312, 609
Eam1104I	CTCTTC	3 cut(s)	217, 2202, 2499
EarI	CTCTTC	3 cut(s)	217, 2202, 2499
EciI	GGCGGA	2 cut(s)	20, 2521
Ecl136II	GAGCTC	1 cut(s)	169
Eco130I	CCWWGG	2 cut(s)	700, 822
Eco24I	GRGCYC	2 cut(s)	171, 1107
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	169
Eco57I	CTGAAG	4 cut(s)	581, 1104, 1470, 2411
Eco88I	CYCGRG	1 cut(s)	1901
Eco91I	GGTNACC	1 cut(s)	1373
EcoICRI	GAGCTC	1 cut(s)	169
EcoNI	CCTNNNNNAGG	2 cut(s)	1240, 1316
EcoO65I	GGTNACC	1 cut(s)	1373
EcoRI	GAATTC	1 cut(s)	1351
EcoRII	CCWGG	6 cut(s)	301, 428, 1311, 2229, 2420, 2601
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	700, 822
EcoT38I	GRGCYC	2 cut(s)	171, 1107
ErhI	CCWWGG	2 cut(s)	700, 822
Esp3I	CGTCTC	2 cut(s)	136, 196
FaeI	CATG	9 cut(s)	447, 529, 826, 929, 1145, 1274, 1359, 1596, 2051
FalI	AAGNNNNNCTT	4 cut(s)	693, 725, 1700, 1732
FaqI	GGGAC	2 cut(s)	32, 464
FatI	CATG	9 cut(s)	443, 525, 822, 925, 1141, 1270, 1355, 1592, 2047
FauI	CCCGC	4 cut(s)	35, 1639, 2249, 2559
FauNDI	CATATG	3 cut(s)	370, 1498, 2143
FblI	GTMKAC	2 cut(s)	177, 596
FriOI	GRGCYC	2 cut(s)	171, 1107
FspBI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
GlaI	GCGC	1 cut(s)	671
GsaI	CCCAGC	1 cut(s)	819
GsuI	CTGGAG	2 cut(s)	1334, 1928
HaeIII	GGCC	7 cut(s)	21, 301, 314, 611, 821, 935, 1938
HapII	CCGG	4 cut(s)	77, 102, 530, 1982
HhaI	GCGC	1 cut(s)	672
Hin1II	CATG	9 cut(s)	447, 529, 826, 929, 1145, 1274, 1359, 1596, 2051
Hin6I	GCGC	1 cut(s)	670
HinP1I	GCGC	1 cut(s)	670
HincII	GTYRAC	3 cut(s)	178, 1479, 2310
HindII	GTYRAC	3 cut(s)	178, 1479, 2310
HindIII	AAGCTT	1 cut(s)	1961
HinfI	GANTC	6 cut(s)	354, 1060, 1076, 1112, 2192, 2614
HpaI	GTTAAC	1 cut(s)	1479
HpaII	CCGG	4 cut(s)	77, 102, 530, 1982
HphI	GGTGA	5 cut(s)	1024, 1109, 1340, 1672, 2618
Hpy166II	GTNNAC	9 cut(s)	178, 597, 975, 1331, 1339, 1479, 2209, 2255, 2310
Hpy8I	GTNNAC	9 cut(s)	178, 597, 975, 1331, 1339, 1479, 2209, 2255, 2310
Hpy99I	CGWCG	3 cut(s)	65, 113, 179
HpyCH4III	ACNGT	6 cut(s)	568, 744, 851, 916, 1840, 1861
HpyCH4IV	ACGT	3 cut(s)	63, 720, 2384
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
HpyF3I	CTNAG	9 cut(s)	1062, 1091, 1570, 2092, 2201, 2225, 2415, 2482, 2634
HpySE526I	ACGT	3 cut(s)	63, 720, 2384
Hsp92II	CATG	9 cut(s)	447, 529, 826, 929, 1145, 1274, 1359, 1596, 2051
HspAI	GCGC	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	1479
LmnI	GCTCC	2 cut(s)	7, 2404
Lsp1109I	GCAGC	9 cut(s)	877, 899, 1012, 1294, 1694, 1744, 1766, 2150, 2471
MaeI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
MaeII	ACGT	3 cut(s)	63, 720, 2384
MaeIII	GTNAC	7 cut(s)	403, 841, 958, 1245, 1373, 2164, 2629
MbiI	CCGCTC	1 cut(s)	2566
MfeI	CAATTG	1 cut(s)	2058
MflI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
MhlI	GDGCHC	3 cut(s)	171, 1107, 2409
MlsI	TGGCCA	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	1054
MmeI	TCCRAC	4 cut(s)	317, 546, 601, 1601
Mox20I	TGGCCA	1 cut(s)	314
MroXI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	5 cut(s)	663, 1478, 1691, 1920, 2082
MslI	CAYNNNNRTG	3 cut(s)	982, 1146, 1998
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	3 cut(s)	890, 1757, 2462
MspI	CCGG	4 cut(s)	77, 102, 530, 1982
MspR9I	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
MunI	CAATTG	1 cut(s)	2058
Mva1269I	GAATGC	1 cut(s)	1288
MvaI	CCWGG	6 cut(s)	303, 430, 1313, 2231, 2422, 2603
MvnI	CGCG	1 cut(s)	672
MwoI	GCNNNNNNNGC	7 cut(s)	27, 170, 467, 1102, 1892, 1969, 2147
NciI	CCSGG	1 cut(s)	1983
NcoI	CCATGG	1 cut(s)	822
NdeI	CATATG	3 cut(s)	370, 1498, 2143
NlaIII	CATG	9 cut(s)	447, 529, 826, 929, 1145, 1274, 1359, 1596, 2051
NlaIV	GGNNCC	2 cut(s)	106, 820
NmeAIII	GCCGAG	2 cut(s)	190, 265
NmuCI	GTSAC	3 cut(s)	403, 1245, 2629
NspI	RCATGY	3 cut(s)	529, 1274, 1596
NspV	TTCGAA	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	1274
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	1 cut(s)	1288
PdmI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
PfeI	GAWTC	5 cut(s)	354, 1076, 1112, 2192, 2614
PleI	GAGTC	1 cut(s)	1054
PpsI	GAGTC	1 cut(s)	1054
PsiI	TTATAA	1 cut(s)	1869
Psp124BI	GAGCTC	1 cut(s)	171
Psp1406I	AACGTT	1 cut(s)	720
Psp6I	CCWGG	6 cut(s)	301, 428, 1311, 2229, 2420, 2601
PspEI	GGTNACC	1 cut(s)	1373
PspFI	CCCAGC	1 cut(s)	815
PspGI	CCWGG	6 cut(s)	301, 428, 1311, 2229, 2420, 2601
PspN4I	GGNNCC	2 cut(s)	106, 820
PspPI	GGNCC	4 cut(s)	79, 299, 819, 934
PstI	CTGCAG	2 cut(s)	889, 1957
PstNI	CAGNNNCTG	1 cut(s)	2276
PsuI	RGATCY	4 cut(s)	1297, 1322, 1912, 2272
PvuII	CAGCTG	3 cut(s)	890, 1757, 2462
RsaI	GTAC	6 cut(s)	367, 746, 765, 1506, 1899, 1949
RsaNI	GTAC	6 cut(s)	366, 745, 764, 1505, 1898, 1948
RseI	CAYNNNNRTG	3 cut(s)	982, 1146, 1998
SacI	GAGCTC	1 cut(s)	171
SalI	GTCGAC	1 cut(s)	176
SaqAI	TTAA	5 cut(s)	663, 1478, 1691, 1920, 2082
Sau96I	GGNCC	4 cut(s)	79, 299, 819, 934
SchI	GAGTC	1 cut(s)	1054
ScrFI	CCNGG	7 cut(s)	303, 430, 1313, 1983, 2231, 2422, 2603
SduI	GDGCHC	3 cut(s)	171, 1107, 2409
SfcI	CTRYAG	4 cut(s)	358, 885, 1180, 1953
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	982, 1146, 1998
SphI	GCATGC	1 cut(s)	1274
SspI	AATATT	1 cut(s)	1164
SspMI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656
SstI	GAGCTC	1 cut(s)	171
StyD4I	CCNGG	7 cut(s)	301, 428, 1311, 1981, 2229, 2420, 2601
StyI	CCWWGG	2 cut(s)	700, 822
TaaI	ACNGT	6 cut(s)	568, 744, 851, 916, 1840, 1861
TaiI	ACGT	3 cut(s)	66, 723, 2387
TaqI	TCGA	8 cut(s)	117, 123, 177, 249, 1107, 1125, 1280, 2562
TatI	WGTACW	2 cut(s)	365, 744
TauI	GCSGC	2 cut(s)	89, 164
TfiI	GAWTC	5 cut(s)	354, 1076, 1112, 2192, 2614
Tru1I	TTAA	5 cut(s)	663, 1478, 1691, 1920, 2082
Tru9I	TTAA	5 cut(s)	663, 1478, 1691, 1920, 2082
TscAI	CASTG	5 cut(s)	408, 947, 1462, 1845, 2461
TseFI	GTSAC	3 cut(s)	403, 1245, 2629
TseI	GCWGC	9 cut(s)	887, 890, 1025, 1307, 1682, 1754, 1757, 2138, 2459
Tsp45I	GTSAC	3 cut(s)	403, 1245, 2629
TspGWI	ACGGA	3 cut(s)	97, 178, 1378
TspRI	CASTG	5 cut(s)	408, 947, 1462, 1845, 2461
VpaK11BI	GGWCC	1 cut(s)	79
XagI	CCTNNNNNAGG	2 cut(s)	1240, 1316
XapI	RAATTY	5 cut(s)	38, 95, 330, 1351, 1556
XceI	RCATGY	3 cut(s)	529, 1274, 1596
XcmI	CCANNNNNNNNNTGG	2 cut(s)	787, 944
XmiI	GTMKAC	2 cut(s)	177, 596
XmnI	GAANNNNTTC	3 cut(s)	353, 1236, 2196
XspI	CTAG	5 cut(s)	1907, 2258, 2348, 2541, 2656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.