Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8212940.1

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 638

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8212940.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgccggttgttgaagaaaaagtggatggacatctgaagacagtttcatatcaggagacaccaattatgtctacatatttagtggctgttgttgtcggattgtttgactatgttgaagatcatacatcagatggagtcaaagtgcgcgtatattgtcaagttggtaaagcaaaccaagggaaacttgctttgaacgtggctgtcaaaacactcgaattgtaccaagaatactttgctgtaccataccctttgcccaaattggatatggttgcaattcctgatttttctgctggggccatggagaattatggtttagttacataccgtgaaacagctttgctctttgatgaacagcattctgcagctgccaacaagcaaagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006518 GO:0006807 GO:0006810 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009914 GO:0009926 GO:0009987 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0031090 GO:0031406 GO:0033218 GO:0033293 GO:0033554 GO:0034641 GO:0036094 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043171 GO:0043177 GO:0043226 GO:0043227 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044422 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0060918 GO:0065007 GO:0065008 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

127

Amino Acids

14.15

Weight (kDa)

5.08

Isoelectric Point (pI)

21.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AccII	CGCG	1 cut(s)	147
AcuI	CTGAAG	1 cut(s)	56
AfaI	GTAC	2 cut(s)	221, 240
AgsI	TTSAA	3 cut(s)	14, 116, 193
AluBI	AGCT	2 cut(s)	335, 365
AluI	AGCT	2 cut(s)	335, 365
Alw26I	GTCTC	1 cut(s)	50
AoxI	GGCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	362, 365
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	1 cut(s)	294
BbsI	GAAGAC	1 cut(s)	44
BbvI	GCAGC	2 cut(s)	352, 374
BccI	CCATC	2 cut(s)	20, 125
BcoDI	GTCTC	1 cut(s)	50
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	2 cut(s)	363, 366
BlsI	GCNGC	2 cut(s)	364, 367
BmgT120I	GGNCC	1 cut(s)	294
BmiI	GGNNCC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	175, 297
BsaXI	ACNNNNNCTCC	2 cut(s)	126, 156
Bse118I	RCCGGY	1 cut(s)	4
Bse8I	GATNNNNATC	1 cut(s)	30
BseDI	CCNNGG	2 cut(s)	175, 297
BseGI	GGATG	1 cut(s)	31
BseJI	GATNNNNATC	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	352, 374
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	296
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	296
Bsp143I	GATC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	297
BspANI	GGCC	1 cut(s)	296
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	1 cut(s)	295
BspMAI	CTGCAG	1 cut(s)	364
BsrFI	RCCGGY	1 cut(s)	4
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	2 cut(s)	175, 297
BssMI	GATC	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	175, 297
Bst4CI	ACNGT	2 cut(s)	43, 326
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	31
BstFNI	CGCG	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	1 cut(s)	118
BstSFI	CTRYAG	1 cut(s)	360
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	2 cut(s)	352, 374
BstV2I	GAAGAC	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	296
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	31
CfoI	GCGC	1 cut(s)	147
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	294
Csp6I	GTAC	2 cut(s)	220, 239
CviAII	CATG	1 cut(s)	298
CviJI	RGCY	5 cut(s)	86, 200, 296, 335, 365
CviKI_1	RGCY	5 cut(s)	86, 200, 296, 335, 365
CviQI	GTAC	2 cut(s)	220, 239
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	175, 297
Eco57I	CTGAAG	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	175, 297
ErhI	CCWWGG	2 cut(s)	175, 297
FaeI	CATG	1 cut(s)	301
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	1 cut(s)	297
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	2 cut(s)	363, 366
FokI	GGATG	1 cut(s)	38
Fsp4HI	GCNGC	2 cut(s)	363, 366
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	363, 366
GsaI	CCCAGC	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	296
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	1 cut(s)	301
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	3 cut(s)	36, 98, 130
Hpy188III	TCNNGA	2 cut(s)	53, 278
Hpy8I	GTNNAC	1 cut(s)	72
HpyCH4III	ACNGT	2 cut(s)	43, 326
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	2 cut(s)	272, 362
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	1 cut(s)	301
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	4 cut(s)	18, 38, 276, 291
Lsp1109I	GCAGC	2 cut(s)	352, 374
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	316
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	26, 49, 128
MluCI	AATT	5 cut(s)	63, 215, 257, 273, 304
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	5
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	147
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	1 cut(s)	118
NlaIII	CATG	1 cut(s)	301
NlaIV	GGNNCC	1 cut(s)	295
PctI	GAATGC	1 cut(s)	355
PkrI	GCNGC	2 cut(s)	364, 367
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	294
PstI	CTGCAG	1 cut(s)	364
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	221, 240
RsaNI	GTAC	2 cut(s)	220, 239
SatI	GCNGC	2 cut(s)	363, 366
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	294
SchI	GAGTC	1 cut(s)	144
SetI	ASST	3 cut(s)	198, 337, 367
SfcI	CTRYAG	1 cut(s)	360
Sse9I	AATT	5 cut(s)	63, 215, 257, 273, 304
StyI	CCWWGG	2 cut(s)	175, 297
TaaI	ACNGT	2 cut(s)	43, 326
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	1 cut(s)	213
TasI	AATT	5 cut(s)	63, 215, 257, 273, 304
TseI	GCWGC	2 cut(s)	362, 365
TspDTI	ATGAA	2 cut(s)	36, 363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XmiI	GTMKAC	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.