Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Forward (+)

50265541 .. 50266363

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009289

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCCTTACTCACTCCCCAAACTTGATATGGTTGCGGTTCCTGAATTTTCTGGTGGGGCCATGGAGAATTATGTGGAAAGTTTGGTCTCAATTTCTTCAACAAACTACTGGTGGACTAATTATGGATACGCTGGAACATTCACATCCAATTCAGTGTCGGGTCTACACCACGCACGTTCAGTTCTTGAAATATTTGATGCTATCAGCTATAAAAAGGGATCTGCTGTTATACGAATGTTGCAGGTTTATCTTGGTGATGATATATTCCAGGTTACAAAGGTTGCTGGCGATGTTACAAAGATTGATATTTTGAAAGTCACCCTCATGTTGAGAAATGGCAGACCAAGAACCGAGGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

121

Amino Acids

13.32

Weight (kDa)

6.72

Isoelectric Point (pI)

24.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1	PF01433	54 - 90	3.3e-07	Peptidase family M1 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	163
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	99, 188, 313
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	91
AlwI	GGATC	1 cut(s)	226
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	44
AspS9I	GGNCC	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	266, 310
BciT130I	CCWGG	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	119
BcoDI	GTCTC	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	232
BfuI	GTATCC	1 cut(s)	119
Bme1390I	CCNGG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	57
BmiI	GGNNCC	2 cut(s)	39, 58
BmrFI	CCNGG	1 cut(s)	269
BmsI	GCATC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	60, 351
Bse1I	ACTGG	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	2 cut(s)	60, 351
BseGI	GGATG	1 cut(s)	143
BseNI	ACTGG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	218
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	2 cut(s)	39, 58
BspMI	ACCTGC	1 cut(s)	232
BspPI	GGATC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	60, 351
BssMI	GATC	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	286
BstDSI	CCRYGG	1 cut(s)	60
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	221
BstMAI	GTCTC	1 cut(s)	91
BstMBI	GATC	1 cut(s)	218
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	267
BstX2I	RGATCY	1 cut(s)	218
BstYI	RGATCY	1 cut(s)	218
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	159
BveI	ACCTGC	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	57
CviAII	CATG	2 cut(s)	61, 325
CviJI	RGCY	2 cut(s)	59, 207
CviKI_1	RGCY	2 cut(s)	59, 207
DpnI	GATC	1 cut(s)	220
DpnII	GATC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	60
Eco31I	GGTCTC	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	2 cut(s)	64, 328
FaiI	YATR	8 cut(s)	29, 62, 72, 123, 210, 230, 263, 326
FatI	CATG	2 cut(s)	60, 324
FblI	GTMKAC	1 cut(s)	163
FokI	GGATG	1 cut(s)	130
HaeIII	GGCC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	64, 328
HphI	GGTGA	2 cut(s)	266, 310
Hpy166II	GTNNAC	2 cut(s)	114, 164
Hpy188III	TCNNGA	2 cut(s)	41, 185
Hpy8I	GTNNAC	2 cut(s)	114, 164
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	1 cut(s)	241
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	64, 328
Kzo9I	GATC	1 cut(s)	218
LpnPI	CCDG	8 cut(s)	36, 54, 94, 117, 227, 254, 270, 281
LweI	GCATC	1 cut(s)	187
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	3 cut(s)	271, 292, 316
MalI	GATC	1 cut(s)	220
MboI	GATC	1 cut(s)	218
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	1 cut(s)	218
MluCI	AATT	5 cut(s)	44, 67, 90, 118, 148
MnlI	CCTC	2 cut(s)	332, 346
MslI	CAYNNNNRTG	1 cut(s)	323
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	1 cut(s)	218
NlaIII	CATG	2 cut(s)	64, 328
NlaIV	GGNNCC	2 cut(s)	39, 58
NmuCI	GTSAC	1 cut(s)	316
Psp6I	CCWGG	1 cut(s)	267
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	39, 58
PspPI	GGNCC	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	218
RseI	CAYNNNNRTG	1 cut(s)	323
Sau3AI	GATC	1 cut(s)	218
Sau96I	GGNCC	1 cut(s)	57
ScrFI	CCNGG	1 cut(s)	269
SetI	ASST	5 cut(s)	178, 209, 246, 273, 282
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	5 cut(s)	44, 67, 90, 118, 148
SsiI	CCGC	1 cut(s)	35
SspI	AATATT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	60
TaiI	ACGT	1 cut(s)	178
TasI	AATT	5 cut(s)	44, 67, 90, 118, 148
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	1 cut(s)	316
Tsp45I	GTSAC	1 cut(s)	316
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	44
XcmI	CCANNNNNNNNNTGG	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.