Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

49499871 .. 49501113

Gene Structure 1243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0388000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGCCACCGCAGCATTGCTCCGTTCACTACGCAGTCGTAATGTTGCAACCGCCTCCCTCTCTGCCTACCGCTCCTTGAATAACACTGTCAAGTCATCGCCGCATCTGGGTCACAAGTGGACAAGTTTGGCAAGATCTTTCAGTTCAAGACCTATTGGCAATGATGTGATTGGGATTGATTTGGGTACAACTAATTCATGTGTTGCTGTGATGGAAGGAAAGATTCCCAAGGTTGTTGAGAACTCTGAGGGTGCTCGGACCACACCATCAGTAGTTGCCTTCAATCAGAAAGGAGAGCTACTATGTGCCTTCATGTGTTGCCTTCAATCAGTACTCCAGCAAAACGTCAAGCGGTCACCAACCCATCGAATACAGTTTATGCAGCCAAGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

131

Amino Acids

14.18

Weight (kDa)

10.16

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	56 - 100	7.4e-18	Hsp70 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AciI	CCGC	5 cut(s)	9, 51, 70, 101, 352
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	187, 333
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	4 cut(s)	79, 147, 283, 326
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	1 cut(s)	256
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	11, 382
AspS9I	GGNCC	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	348
AvaII	GGWCC	1 cut(s)	258
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	23
BccI	CCATC	3 cut(s)	205, 274, 372
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	3 cut(s)	12, 101, 383
BlsI	GCNGC	3 cut(s)	13, 102, 384
BmcAI	AGTACT	1 cut(s)	333
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	258
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse3DI	GCAATG	2 cut(s)	14, 166
BseDI	CCNNGG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	2 cut(s)	14, 166
BseMII	CTCAG	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	107
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	256
Bsp143I	GATC	1 cut(s)	134
BspACI	CCGC	5 cut(s)	9, 51, 70, 101, 352
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	2 cut(s)	14, 166
BssECI	CCNNGG	1 cut(s)	228
BssMI	GATC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	88, 375
BstDEI	CTNAG	1 cut(s)	246
BstEII	GGTNACC	1 cut(s)	354
BstKTI	GATC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstPI	GGTNACC	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	81
BtsIMutI	CAGTG	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	258
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	2 cut(s)	186, 332
CviAII	CATG	2 cut(s)	198, 313
CviJI	RGCY	3 cut(s)	5, 298, 385
CviKI_1	RGCY	3 cut(s)	5, 298, 385
CviQI	GTAC	2 cut(s)	186, 332
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	354
EcoO65I	GGTNACC	1 cut(s)	354
EcoT14I	CCWWGG	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	2 cut(s)	201, 316
FaiI	YATR	4 cut(s)	199, 304, 314, 380
FatI	CATG	2 cut(s)	197, 312
Fnu4HI	GCNGC	3 cut(s)	12, 101, 383
Fsp4HI	GCNGC	3 cut(s)	12, 101, 383
GluI	GCNGC	3 cut(s)	12, 101, 383
GsuI	CTGGAG	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	201, 316
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	348
Hpy166II	GTNNAC	2 cut(s)	26, 120
Hpy188I	TCNGA	4 cut(s)	247, 258, 288, 395
Hpy188III	TCNNGA	1 cut(s)	147
Hpy8I	GTNNAC	2 cut(s)	26, 120
HpyAV	CCTTC	4 cut(s)	209, 289, 319, 332
HpyCH4III	ACNGT	2 cut(s)	88, 375
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	2 cut(s)	47, 382
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	246
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	201, 316
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	2 cut(s)	24, 77
LpnPI	CCDG	2 cut(s)	92, 350
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	112
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	110, 354
MalI	GATC	1 cut(s)	136
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	1 cut(s)	134
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	256
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	193
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	64, 68, 241
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	2 cut(s)	201, 316
NmuCI	GTSAC	2 cut(s)	110, 354
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	13, 102, 384
PspEI	GGTNACC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	258
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	2 cut(s)	187, 333
RsaNI	GTAC	2 cut(s)	186, 332
SatI	GCNGC	3 cut(s)	12, 101, 383
Sau3AI	GATC	1 cut(s)	134
Sau96I	GGNCC	1 cut(s)	258
ScaI	AGTACT	1 cut(s)	333
SduI	GDGCHC	1 cut(s)	256
SetI	ASST	4 cut(s)	154, 234, 300, 348
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	258
Sse9I	AATT	1 cut(s)	193
SsiI	CCGC	5 cut(s)	9, 51, 70, 101, 352
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	88, 375
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	367
TasI	AATT	1 cut(s)	193
TatI	WGTACW	1 cut(s)	331
TauI	GCSGC	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	223
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	110, 354
TseI	GCWGC	2 cut(s)	11, 382
Tsp45I	GTSAC	2 cut(s)	110, 354
TspDTI	ATGAA	2 cut(s)	186, 301
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	258
ZrmI	AGTACT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.