Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000648

Physical Location & Seq

Genomic Coordinates Reverse (-)

66485454 .. 66491555

Gene Structure 6102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG460500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGAACAGAAGCAAGGCATAGAGCAATTTAAAGGCCAAGCAAGGTTACCGAATTTTGCAATCCCGAAACGCTATGATCTTCATCTCAAACTTGATCTCTCTGCCTGCACCTTCTCCGGCACCGTGCAGATTAACGTTAGCATCGTTGAAGAGACCAAGTTTCTTGTCTCGAACGCTCTTGAACTTGATGTTCATCAAGTTTGGTTCACCAACTCTCACGGCCAAAAGTACCACCCCTGCGATGTTGTTTTGGATGGAGATGATGAAGTTCTTGTTTTGGTATTTGATAAAGCACTTGGTATTGGTGAGGGAGTCTTGGGGGTCGACTTTTCTGCAGTCCTTAATGCGCACTTGGAGGGGTTCTATAAATGTGCTTATATGGATGGGGAAGAGAAAAAGAATATGGCTGTTACTCAATTCGAAGCTGTGGATGCTAGGCGATGCTTTCCCTGTTGGGATGAACCTGCTCTCAAGGCCACCTTCAAGATAGCATTAGATGTACCATCAGAGCTGACAGCTTTATCCAATATGCCTATTATTAATGAAAAGTTTGATGGAGATGTTAAGACTGTTTATTTCGAGGAATCTCCAATTATGTCAACTTATTTGGTGGCCGTTGTTGTTGGCGTATTTGATCATATTGAAGATACAACATCAGATGGGGTAAAGGTTCGTGCATATTGCCCTGTTGGGAAGAGTGATAAAGGGGAGTTTGCTTTAAATGTTGCTGTTAAGACCCTTGATCTTTTCTCCAAATACTTCTCAACGCCTTACTCACTTCCCAAACTTGATATGGTTGCGGTTCCTGAATTTTCTGCTGGGGCCATGGAGAATTATGGTTTGATTACATACCGTGAAAATGAACTGCTTTTTGATCCTTTGCATTCCACAGCAGCAAGAAAGCAAAGAATGGCAATTGTTGTATCACATGAAGTAGCACATCAGTGGTTTGGCAATCTGGTAACAATGGAATGGTGGACTGATTTATGGCTTAACGAGGGTTTTGCAACATGGATAAGTTATATGGTCACTGATATTTTGTTTCCTGAGTGGAAAGTTTGGTCTCAATTTCTTCAATATACTACTGGTGGCCTAATCATGGATGCCCTGGAACAGTCACATCCGATTCAGGTGGAGGTACACCATGCACGCTCAATTCATGAAGTATTTGATGCTGTCAGCTATGAAAAGGGATCTGCTGTTATACGAATGCTGCAGACTTATCTTGGTGATGACATATTCCAGAAATCTTTAAGTTCCTACATAAAAAGATATTCTGGAAAAAATGCAAAGACAGAAGATTTATGGAGTGTTCTGTCTGAGGAATCTGGTGTCAAAATCAGTAAAATGATGGATGATTGGACCAAGAAGCAAGGATATCCTGTGATCTCTGTAACAGCGAAGGATCATATTTTGGAATTTAAGCAGACACAGTTTCTGTCAGCAGGTATGCATGGTGACGGGGAATGGATTGTTCCAGTAACTATTTCACTTGGTTCATATGAGAGACGCAAGAATTTCCTTTTGGAAACCAAGTCCAATGAAGTGGACATATCAGATCTTGTTGACACCTCCGATACTAATTTAAAGAATGAAGAGACATGTGATGATCAACTGTGGGTCAAGGTTAACATCGAGCAGAGTGGTTTCTATAGGGTAAAGTACGAAGATAAGCTAGCTGCTCGACTTAGGAAGGCTATTGAGCATAATAGCTTGGAAGCAACAGACAAATTTGGCATTCTGGATGATGCATATGCCCTTTGCCAAGCTTGTGAACAGTCACTATCATCTTTGCTTTCCTTAATGGATGTATACAGAAAAGAAGTTGATTATATTGTCTTATCAAAACTTATAGACGTATGTTATAACGTTGTTAAAGTATCGAGCGAGGCCATCCCTGATTCAGTGAATGAGTTGAAGCAATTTTGCATCAATCTCCTCATGTTTCCAGCAGAAAAATTAGGCTGGGAACCAGTACCTGGTGAGAGTCACTTCAGTACACTTTTGAGAGCAGAAGTCTTGCAGGCCTTGGTTACATTTGGTCATGATAAAACTCAAAATGAAGCATTAGATCGATTTCAGAAATTATTGAATGATAGAACTACTCCGCTTCTAACTGCAGATACAAGAGCGGCTGCTTACATTGCAGTGATGAGGAATGCTGGCAGCTCACACAAGGAAGGCTTTGAGTCACTATTAAATGTTTACAGAGAAGCTGGTACAGTGCAAGAGAAGGAACGAATTCTACGTTATTTTGCGTCTTCTCCAGACCCAGATACAGTTGTTGATGTTTTGAACTTTTTCTTATCTGATGAGGTTCGAGATCAGGACATTATATATGGACTCCCTGGTATAAGCTTAGAATGCCGTGAAACAGCATGGAAATGGATGAAGGAGAACTGGGACCTGATCCTCACCAAGTATGGTGCTGGATTACTCACCCGTTTCGTAAGAGACATTGTAACACCGTTTTGTAGCAATGAAAAGGCTGATGAGGTTGAAGAATTTTTCACAACCCGGGTGCATCCTTCCATTGCTATGACTCTGAAGCAAAGCATTGAGCAAGTCCGAATCAAGGCGAGGTGGGTTCAAAGCGCAAGGCAGGAGCAATCTCTTAGAGAACTAGTCAAAGAGTTGGCAGGCAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001666 GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0008270 GO:0009056 GO:0009628 GO:0009987 GO:0016787 GO:0019538 GO:0033218 GO:0033554 GO:0034641 GO:0036293 GO:0036294 GO:0042221 GO:0042277 GO:0043167 GO:0043169 GO:0043170 GO:0043171 GO:0043603 GO:0044237 GO:0044238 GO:0044248 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0070006 GO:0070011 GO:0070482 GO:0070887 GO:0071453 GO:0071456 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ERAP1_C Peptidase_M1

Protein Analysis

883

Amino Acids

100.26

Weight (kDa)

5.06

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M1_N	PF17900	22 - 203	1.3e-47	Peptidase M1 N-terminal domain
Peptidase_M1	PF01433	238 - 454	6.4e-85	Peptidase family M1 domain
ERAP1_C	PF11838	540 - 857	7.3e-75	ERAP1-like C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000648)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G33090
fragaria_vesca	FvH4_2g31431 FvH4_2g31440 FvH4_6g34250 FvH4_6g34262 FvH4_6g34263
malus_domestica	MD08G1066400.v1.1 MD08G1066500.v1.1 MD08G1067400.v1.1 MD09G1070300.v1.1 MD09G1187200.v1.1 MD10G1090900.v1.1 MD15G1054400.v1.1 MD17G1171400.v1.1
prunus_persica	Prupe.1G407900_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G408000_v2.0.a1 Prupe.1G457300_v2.0.a1 Prupe.3G044500_v2.0.a1 Prupe.3G044500_v2.0.a1
pyrus_communis	pycom08g05520 pycom08g05550 pycom08g05560 pycom08g05590 pycom09g10370 pycom09g10380 pycom10g07440 pycom10g07460 pycom15g05130 pycom15g05150 pycom17g16900
rosa_chinensis	RchiOBHm_Chr2g0144571 RchiOBHm_Chr2g0144611 RchiOBHm_Chr4g0390591 RchiOBHm_Chr6g0311371 RchiOBHm_Chr6g0311381
rosa_laevigata	RLG00000009010 RLG00000009289 RLG00000010411 RLG00000010412 RLG00000020090 RLG00000020092 RLG00000036974
rosa_multiflora	Rmu_co8212940.1_g000001 Rmu_sc0005789.1_g000001 Rmu_sc0008536.1_g000010 Rmu_sc0008536.1_g000011 Rmu_sc0009300.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056400 Rroxscaffold_2G00084720 Rroxscaffold_2G00101200 Rroxscaffold_7G00157670 Rroxscaffold_7G00157680
rosa_rugosa	Rorug02G0387900 Rorug02G0388000 Rorug02G0388100 Rorug06G0388300 Rorug06G0388400
rosa_samantha	Rh2AG440000 Rh2AG440100 Rh2BG450000 Rh2BG450300 Rh2BG450500 Rh2CG427000 Rh2CG427200 Rh2DG459900 Rh2DG460300 Rh2DG460500 Rh6AG502600 Rh6AG502700 Rh6BG513300 Rh6CG519100 Rh6CG519200
rosa_wichuraiana	Rw2G036000 Rw6G043770 Rw6G043780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1866
Acc16I	TGCGCA	1 cut(s)	348
Acc36I	ACCTGC	2 cut(s)	472, 1436
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	1979
AccBSI	CCGCTC	1 cut(s)	2132
AccI	GTMKAC	2 cut(s)	324, 1812
AciI	CCGC	3 cut(s)	800, 2108, 2132
AclI	AACGTT	2 cut(s)	135, 1869
AclWI	GGATC	4 cut(s)	869, 1201, 1413, 2404
AcoI	YGGCCR	2 cut(s)	220, 612
AcsI	RAATTY	7 cut(s)	52, 809, 1418, 1516, 1730, 2241, 2504
AcuI	CTGAAG	2 cut(s)	1978, 2567
AfaI	GTAC	7 cut(s)	230, 501, 1140, 1664, 1977, 1999, 2221
AfiI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2575
AflIII	ACRYGT	1 cut(s)	1601
AhlI	ACTAGT	1 cut(s)	2623
AjnI	CCWGG	3 cut(s)	1107, 1978, 2347
AjuI	GAANNNNNNNTTGG	2 cut(s)	1508, 1540
AleI	CACNNNNGTG	1 cut(s)	943
Alw26I	GTCTC	6 cut(s)	146, 172, 1068, 1501, 1592, 2448
AlwI	GGATC	4 cut(s)	869, 1201, 1413, 2404
AlwNI	CAGNNNCTG	2 cut(s)	1438, 1979
Ama87I	CYCGRG	1 cut(s)	2517
AoxI	GGCC	8 cut(s)	34, 220, 474, 612, 822, 1090, 1890, 2025
ApeKI	GCWGC	5 cut(s)	893, 1213, 1679, 2135, 2166
ApoI	RAATTY	7 cut(s)	52, 809, 1418, 1516, 1730, 2241, 2504
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	2 cut(s)	2241, 2300
AspLEI	GCGC	2 cut(s)	349, 2597
AspS9I	GGNCC	3 cut(s)	822, 1362, 2404
AsuC2I	CCSGG	2 cut(s)	2518, 2519
AsuHPI	GGTGA	7 cut(s)	199, 317, 1241, 1469, 1994, 2407, 2431
AsuII	TTCGAA	1 cut(s)	420
AsuNHI	GCTAGC	1 cut(s)	1675
AvaI	CYCGRG	1 cut(s)	2517
AvaII	GGWCC	2 cut(s)	1362, 2404
BaeI	ACNNNNGTAYC	2 cut(s)	2268, 2301
BanI	GGYRCC	1 cut(s)	119
BbsI	GAAGAC	1 cut(s)	2253
BbvI	GCAGC	5 cut(s)	905, 1200, 1666, 2122, 2178
BccI	CCATC	7 cut(s)	248, 377, 511, 548, 653, 1345, 1901
BceAI	ACGGC	3 cut(s)	235, 599, 2352
BcgI	CGANNNNNNTGC	4 cut(s)	314, 348, 986, 1020
BciT130I	CCWGG	3 cut(s)	1109, 1980, 2349
BclI	TGATCA	2 cut(s)	634, 1609
BcnI	CCSGG	2 cut(s)	2518, 2519
BcoDI	GTCTC	6 cut(s)	146, 172, 1068, 1501, 1592, 2448
BcuI	ACTAGT	1 cut(s)	2623
BfaI	CTAG	3 cut(s)	435, 1676, 2624
BfmI	CTRYAG	4 cut(s)	333, 1214, 1651, 2118
BfuAI	ACCTGC	2 cut(s)	472, 1436
BglII	AGATCT	1 cut(s)	1558
BisI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
BlsI	GCNGC	6 cut(s)	895, 1215, 1681, 2134, 2137, 2168
Bme1390I	CCNGG	5 cut(s)	1109, 1980, 2349, 2518, 2519
Bme18I	GGWCC	2 cut(s)	1362, 2404
BmeT110I	CYCGRG	1 cut(s)	2517
BmgT120I	GGNCC	3 cut(s)	822, 1362, 2404
BmiI	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
BmrFI	CCNGG	5 cut(s)	1109, 1980, 2349, 2518, 2519
BmrI	ACTGGG	1 cut(s)	2410
BmsI	GCATC	8 cut(s)	150, 421, 431, 1093, 1162, 1738, 1938, 2533
BmtI	GCTAGC	1 cut(s)	1679
BmuI	ACTGGG	1 cut(s)	2410
BpiI	GAAGAC	1 cut(s)	2253
BpmI	CTGGAG	1 cut(s)	2250
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	455
BpuMI	CCSGG	2 cut(s)	2518, 2519
Bsa29I	ATCGAT	1 cut(s)	2074
BsaBI	GATNNNNATC	2 cut(s)	81, 192
BsaI	GGTCTC	2 cut(s)	146, 1068
BsaJI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2517
Bsc4I	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2575
Bse1I	ACTGG	4 cut(s)	1090, 1478, 1973, 2405
Bse3DI	GCAATG	3 cut(s)	2142, 2485, 2532
Bse8I	GATNNNNATC	2 cut(s)	81, 192
BseBI	CCWGG	3 cut(s)	1109, 1980, 2349
BseCI	ATCGAT	1 cut(s)	2074
BseDI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2517
BseJI	GATNNNNATC	2 cut(s)	81, 192
BseLI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2575
BseMI	GCAATG	3 cut(s)	2142, 2485, 2532
BseMII	CTCAG	2 cut(s)	1038, 1311
BseNI	ACTGG	4 cut(s)	1090, 1478, 1973, 2405
BseRI	GAGGAG	1 cut(s)	1928
BseXI	GCAGC	5 cut(s)	905, 1200, 1666, 2122, 2178
BseYI	CCCAGC	2 cut(s)	818, 1965
BsgI	GTGCAG	2 cut(s)	91, 146
BshFI	GGCC	8 cut(s)	36, 222, 476, 614, 824, 1092, 1892, 2027
BshNI	GGYRCC	1 cut(s)	119
BshVI	ATCGAT	1 cut(s)	2074
BsiHKCI	CYCGRG	1 cut(s)	2517
BsiSI	CCGG	2 cut(s)	117, 2518
BslFI	GGGAC	1 cut(s)	2417
BslI	CCNNNNNNNGG	3 cut(s)	1099, 1979, 2575
BsmAI	GTCTC	6 cut(s)	146, 172, 1068, 1501, 1592, 2448
BsmBI	CGTCTC	1 cut(s)	1501
BsmFI	GGGAC	1 cut(s)	2417
BsmI	GAATGC	5 cut(s)	883, 1215, 1737, 2164, 2369
BsnI	GGCC	8 cut(s)	36, 222, 476, 614, 824, 1092, 1892, 2027
Bso31I	GGTCTC	2 cut(s)	146, 1068
BsoBI	CYCGRG	1 cut(s)	2517
Bsp119I	TTCGAA	1 cut(s)	420
Bsp19I	CCATGG	1 cut(s)	825
BspACI	CCGC	3 cut(s)	800, 2108, 2132
BspANI	GGCC	8 cut(s)	36, 222, 476, 614, 824, 1092, 1892, 2027
BspCNI	CTCAG	2 cut(s)	1039, 1312
BspDI	ATCGAT	1 cut(s)	2074
BspHI	TCATGA	2 cut(s)	1159, 2044
BspLI	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
BspMAI	CTGCAG	3 cut(s)	337, 1218, 2122
BspMI	ACCTGC	2 cut(s)	472, 1436
BspOI	GCTAGC	1 cut(s)	1679
BspPI	GGATC	4 cut(s)	869, 1201, 1413, 2404
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	2 cut(s)	146, 1068
BsrBI	CCGCTC	1 cut(s)	2132
BsrDI	GCAATG	3 cut(s)	2142, 2485, 2532
BsrI	ACTGG	4 cut(s)	1090, 1478, 1973, 2405
BssECI	CCNNGG	5 cut(s)	825, 1107, 2028, 2347, 2517
BssNAI	GTATAC	1 cut(s)	1813
BssT1I	CCWWGG	2 cut(s)	825, 2028
Bst1107I	GTATAC	1 cut(s)	1813
Bst2UI	CCWGG	3 cut(s)	1109, 1980, 2349
Bst6I	CTCTTC	4 cut(s)	144, 384, 689, 1590
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	6 cut(s)	106, 1150, 1677, 2025, 2164, 2641
BstDEI	CTNAG	5 cut(s)	1047, 1320, 1688, 2359, 2615
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	45
BstHHI	GCGC	2 cut(s)	349, 2597
BstMAI	GTCTC	6 cut(s)	146, 172, 1068, 1501, 1592, 2448
BstMWI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
BstNI	CCWGG	3 cut(s)	1109, 1980, 2349
BstNSI	RCATGY	1 cut(s)	1605
BstPI	GGTNACC	1 cut(s)	45
BstSCI	CCNGG	5 cut(s)	1107, 1978, 2347, 2516, 2517
BstSFI	CTRYAG	4 cut(s)	333, 1214, 1651, 2118
BstV1I	GCAGC	5 cut(s)	905, 1200, 1666, 2122, 2178
BstV2I	GAAGAC	1 cut(s)	2253
BstX2I	RGATCY	2 cut(s)	1193, 1558
BstXI	CCANNNNNNTGG	1 cut(s)	1546
BstYI	RGATCY	2 cut(s)	1193, 1558
BstZ17I	GTATAC	1 cut(s)	1813
Bsu15I	ATCGAT	1 cut(s)	2074
BsuRI	GGCC	8 cut(s)	36, 222, 476, 614, 824, 1092, 1892, 2027
BsuTUI	ATCGAT	1 cut(s)	2074
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	2 cut(s)	255, 454
BtsI	GCAGTG	1 cut(s)	2154
BtsIMutI	CAGTG	5 cut(s)	950, 1029, 1911, 2154, 2229
BveI	ACCTGC	2 cut(s)	472, 1436
Cac8I	GCNNGC	6 cut(s)	106, 1150, 1677, 2025, 2164, 2641
CaiI	CAGNNNCTG	2 cut(s)	1438, 1979
CciI	TCATGA	2 cut(s)	1159, 2044
CfoI	GCGC	2 cut(s)	349, 2597
Cfr13I	GGNCC	3 cut(s)	822, 1362, 2404
Cfr9I	CCCGGG	1 cut(s)	2517
ClaI	ATCGAT	1 cut(s)	2074
CseI	GACGC	2 cut(s)	1518, 2247
CsiI	ACCWGGT	1 cut(s)	1978
Csp6I	GTAC	7 cut(s)	229, 500, 1139, 1663, 1976, 1998, 2220
CviQI	GTAC	7 cut(s)	229, 500, 1139, 1663, 1976, 1998, 2220
DdeI	CTNAG	5 cut(s)	1047, 1320, 1688, 2359, 2615
DraI	TTTAAA	3 cut(s)	31, 720, 1587
EaeI	YGGCCR	2 cut(s)	220, 612
Eam1104I	CTCTTC	4 cut(s)	144, 384, 689, 1590
EarI	CTCTTC	4 cut(s)	144, 384, 689, 1590
Eco130I	CCWWGG	2 cut(s)	825, 2028
Eco147I	AGGCCT	1 cut(s)	2027
Eco31I	GGTCTC	2 cut(s)	146, 1068
Eco32I	GATATC	1 cut(s)	1379
Eco47I	GGWCC	2 cut(s)	1362, 2404
Eco57I	CTGAAG	2 cut(s)	1978, 2567
Eco88I	CYCGRG	1 cut(s)	2517
Eco91I	GGTNACC	1 cut(s)	45
EcoO109I	RGGNCCY	1 cut(s)	2404
EcoO65I	GGTNACC	1 cut(s)	45
EcoRI	GAATTC	1 cut(s)	2241
EcoRII	CCWGG	3 cut(s)	1107, 1978, 2347
EcoRV	GATATC	1 cut(s)	1379
EcoT14I	CCWWGG	2 cut(s)	825, 2028
EcoT22I	ATGCAT	2 cut(s)	1455, 1753
ErhI	CCWWGG	2 cut(s)	825, 2028
Esp3I	CGTCTC	1 cut(s)	1501
FalI	AAGNNNNNCTT	4 cut(s)	464, 496, 2168, 2200
FaqI	GGGAC	1 cut(s)	2417
FauNDI	CATATG	2 cut(s)	1501, 1753
FbaI	TGATCA	2 cut(s)	634, 1609
FblI	GTMKAC	2 cut(s)	324, 1812
Fnu4HI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
Fsp4HI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
FspAI	RTGCGCAY	1 cut(s)	348
FspBI	CTAG	3 cut(s)	435, 1676, 2624
FspI	TGCGCA	1 cut(s)	348
GlaI	GCGC	2 cut(s)	348, 2596
GluI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
GsaI	CCCAGC	2 cut(s)	822, 1969
GsuI	CTGGAG	1 cut(s)	2250
HaeIII	GGCC	8 cut(s)	36, 222, 476, 614, 824, 1092, 1892, 2027
HapII	CCGG	2 cut(s)	117, 2518
HgaI	GACGC	2 cut(s)	1518, 2247
HhaI	GCGC	2 cut(s)	349, 2597
Hin6I	GCGC	2 cut(s)	347, 2595
HinP1I	GCGC	2 cut(s)	347, 2595
HincII	GTYRAC	4 cut(s)	325, 600, 1567, 1630
HindII	GTYRAC	4 cut(s)	325, 600, 1567, 1630
HindIII	AAGCTT	2 cut(s)	1767, 2356
HpaI	GTTAAC	1 cut(s)	1630
HpaII	CCGG	2 cut(s)	117, 2518
HphI	GGTGA	7 cut(s)	199, 317, 1241, 1469, 1994, 2407, 2431
HpyAV	CCTTC	8 cut(s)	121, 490, 1396, 1687, 2174, 2227, 2386, 2538
HpyCH4IV	ACGT	4 cut(s)	135, 1857, 1869, 2248
HpyF10VI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
HpyF3I	CTNAG	5 cut(s)	1047, 1320, 1688, 2359, 2615
HpySE526I	ACGT	4 cut(s)	135, 1857, 1869, 2248
HspAI	GCGC	2 cut(s)	347, 2595
Ksp22I	TGATCA	2 cut(s)	634, 1609
KspAI	GTTAAC	1 cut(s)	1630
LmnI	GCTCC	1 cut(s)	2605
Lsp1109I	GCAGC	5 cut(s)	905, 1200, 1666, 2122, 2178
LweI	GCATC	8 cut(s)	150, 421, 431, 1093, 1162, 1738, 1938, 2533
MabI	ACCWGGT	1 cut(s)	1978
MaeI	CTAG	3 cut(s)	435, 1676, 2624
MaeII	ACGT	4 cut(s)	135, 1857, 1869, 2248
MbiI	CCGCTC	1 cut(s)	2132
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	2 cut(s)	1193, 1558
MlyI	GAGTC	5 cut(s)	321, 1996, 2198, 2337, 2536
Mph1103I	ATGCAT	2 cut(s)	1455, 1753
MroXI	GAANNNNTTC	2 cut(s)	2241, 2300
MslI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2537
MspI	CCGG	2 cut(s)	117, 2518
MspR9I	CCNGG	5 cut(s)	1109, 1980, 2349, 2518, 2519
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	5 cut(s)	883, 1215, 1737, 2164, 2369
MvaI	CCWGG	3 cut(s)	1109, 1980, 2349
MwoI	GCNNNNNNNGC	4 cut(s)	431, 473, 2144, 2364
NciI	CCSGG	2 cut(s)	2518, 2519
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	2 cut(s)	1501, 1753
NheI	GCTAGC	1 cut(s)	1675
NlaIV	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
NmuCI	GTSAC	6 cut(s)	1027, 1116, 1457, 1779, 1988, 2190
NsbI	TGCGCA	1 cut(s)	348
NsiI	ATGCAT	2 cut(s)	1455, 1753
NspI	RCATGY	1 cut(s)	1605
NspV	TTCGAA	1 cut(s)	420
OliI	CACNNNNGTG	1 cut(s)	943
PagI	TCATGA	2 cut(s)	1159, 2044
PceI	AGGCCT	1 cut(s)	2027
PciI	ACATGT	1 cut(s)	1601
PcsI	WCGNNNNNNNCGW	2 cut(s)	141, 2245
PctI	GAATGC	5 cut(s)	883, 1215, 1737, 2164, 2369
PdmI	GAANNNNTTC	2 cut(s)	2241, 2300
PfeI	GAWTC	5 cut(s)	584, 1126, 1325, 1901, 2571
PflMI	CCANNNNNTGG	1 cut(s)	1979
PkrI	GCNGC	6 cut(s)	895, 1215, 1681, 2134, 2137, 2168
PleI	GAGTC	5 cut(s)	320, 1995, 2197, 2337, 2536
PpsI	GAGTC	5 cut(s)	320, 1995, 2197, 2337, 2536
PpuMI	RGGWCCY	1 cut(s)	2404
PscI	ACATGT	1 cut(s)	1601
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	1 cut(s)	1866
Psp1406I	AACGTT	2 cut(s)	135, 1869
Psp5II	RGGWCCY	1 cut(s)	2404
Psp6I	CCWGG	3 cut(s)	1107, 1978, 2347
PspEI	GGTNACC	1 cut(s)	45
PspFI	CCCAGC	2 cut(s)	818, 1965
PspGI	CCWGG	3 cut(s)	1107, 1978, 2347
PspN4I	GGNNCC	5 cut(s)	121, 804, 823, 1971, 2405
PspPI	GGNCC	3 cut(s)	822, 1362, 2404
PspPPI	RGGWCCY	1 cut(s)	2404
PsrI	GAACNNNNNNTAC	2 cut(s)	2229, 2261
PstI	CTGCAG	3 cut(s)	337, 1218, 2122
PstNI	CAGNNNCTG	2 cut(s)	1438, 1979
PsuI	RGATCY	2 cut(s)	1193, 1558
RsaI	GTAC	7 cut(s)	230, 501, 1140, 1664, 1977, 1999, 2221
RsaNI	GTAC	7 cut(s)	229, 500, 1139, 1663, 1976, 1998, 2220
RseI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2537
SalI	GTCGAC	1 cut(s)	323
SatI	GCNGC	6 cut(s)	894, 1214, 1680, 2133, 2136, 2167
Sau96I	GGNCC	3 cut(s)	822, 1362, 2404
SchI	GAGTC	5 cut(s)	321, 1996, 2198, 2337, 2536
ScrFI	CCNGG	5 cut(s)	1109, 1980, 2349, 2518, 2519
SexAI	ACCWGGT	1 cut(s)	1978
SfaNI	GCATC	8 cut(s)	150, 421, 431, 1093, 1162, 1738, 1938, 2533
SfcI	CTRYAG	4 cut(s)	333, 1214, 1651, 2118
SfuI	TTCGAA	1 cut(s)	420
SinI	GGWCC	2 cut(s)	1362, 2404
SmaI	CCCGGG	1 cut(s)	2519
SmiMI	CAYNNNNRTG	4 cut(s)	943, 2147, 2383, 2537
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SpeI	ACTAGT	1 cut(s)	2623
SseBI	AGGCCT	1 cut(s)	2027
SsiI	CCGC	3 cut(s)	800, 2108, 2132
SspMI	CTAG	3 cut(s)	435, 1676, 2624
StuI	AGGCCT	1 cut(s)	2027
StyD4I	CCNGG	5 cut(s)	1107, 1978, 2347, 2516, 2517
StyI	CCWWGG	2 cut(s)	825, 2028
TaiI	ACGT	4 cut(s)	138, 1860, 1872, 2251
TaqI	TCGA	9 cut(s)	170, 324, 420, 579, 1635, 1684, 1883, 2074, 2320
TatI	WGTACW	1 cut(s)	1997
TauI	GCSGC	1 cut(s)	2135
TfiI	GAWTC	5 cut(s)	584, 1126, 1325, 1901, 2571
TscAI	CASTG	5 cut(s)	950, 1036, 1911, 2154, 2229
TseFI	GTSAC	6 cut(s)	1027, 1116, 1457, 1779, 1988, 2190
TseI	GCWGC	5 cut(s)	893, 1213, 1679, 2135, 2166
Tsp45I	GTSAC	6 cut(s)	1027, 1116, 1457, 1779, 1988, 2190
TspMI	CCCGGG	1 cut(s)	2517
TspRI	CASTG	5 cut(s)	950, 1036, 1911, 2154, 2229
Van91I	CCANNNNNTGG	1 cut(s)	1979
VpaK11BI	GGWCC	2 cut(s)	1362, 2404
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	7 cut(s)	52, 809, 1418, 1516, 1730, 2241, 2504
XceI	RCATGY	1 cut(s)	1605
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XmaI	CCCGGG	1 cut(s)	2517
XmiI	GTMKAC	2 cut(s)	324, 1812
XmnI	GAANNNNTTC	2 cut(s)	2241, 2300
XspI	CTAG	3 cut(s)	435, 1676, 2624
Zsp2I	ATGCAT	2 cut(s)	1455, 1753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.