Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

2557157 .. 2558480

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02200.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATCAACCTCAATTCTCTCCAGGAGCTGGTGATTGGCAGCTGTGAAGGTTTGGCTTCCATTCTAGAGGAGGGTTTTCCCCCCAACCTAACATCACTTATCCTCTTGAATCCCAGAAATTGTAAGCCACTCAGGGACTGGGGATTGCACTTGCACAGACTCAGTTCTCTAACAGAGTTATGCATTCAAGGTGTCGATCAAGATTTGGTGTCCTTTCCACCAGAGGAGATGCTGCTTCCTACATCTCTCATTAAACTTACCATTGGATTCTTCCCAAATCTGAGACGAATATCCAGCCAGGGCCTTCAAGTACTCACCTCTCTTGAATCTCTTAGAATTGATGATTGCCCAAAGCTTGCATCCATTCCAAAGGATCTGCCCTTTTCACTCACACAACTTTACATCTTTGATGATTGTCCTGTGCTTAGAAAGAGATATAAACCAGATGTACCAAGGTACTGGGAAAAAATAAGTCACATTCCATACATAGAGATTGGGGACTACTACACACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

172

Amino Acids

19.49

Weight (kDa)

5.35

Isoelectric Point (pI)

53.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	28
AclWI	GGATC	1 cut(s)	381
AfaI	GTAC	3 cut(s)	312, 450, 458
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	109, 188, 308, 326
AjnI	CCWGG	2 cut(s)	21, 297
AluBI	AGCT	3 cut(s)	28, 42, 355
AluI	AGCT	3 cut(s)	28, 42, 355
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	381
AlwNI	CAGNNNCTG	2 cut(s)	28, 138
AoxI	GGCC	1 cut(s)	301
ApeKI	GCWGC	2 cut(s)	39, 232
AspS9I	GGNCC	1 cut(s)	301
AsuHPI	GGTGA	2 cut(s)	43, 307
BbvI	GCAGC	2 cut(s)	51, 219
BciT130I	CCWGG	2 cut(s)	23, 299
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	65
BisI	GCNGC	2 cut(s)	40, 233
BlsI	GCNGC	2 cut(s)	41, 234
BmcAI	AGTACT	1 cut(s)	312
Bme1390I	CCNGG	2 cut(s)	23, 299
BmgT120I	GGNCC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	23, 299
BmrI	ACTGGG	2 cut(s)	148, 469
BmsI	GCATC	2 cut(s)	219, 368
BmuI	ACTGGG	2 cut(s)	148, 469
BpmI	CTGGAG	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	298, 452
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	143, 464
BseBI	CCWGG	2 cut(s)	23, 299
BseDI	CCNNGG	2 cut(s)	298, 452
BseGI	GGATG	1 cut(s)	359
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	3 cut(s)	145, 175, 272
BseNI	ACTGG	2 cut(s)	143, 464
BseRI	GAGGAG	2 cut(s)	83, 239
BseXI	GCAGC	2 cut(s)	51, 219
BshFI	GGCC	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	149, 512
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	277
BsmBI	CGTCTC	1 cut(s)	277
BsmFI	GGGAC	2 cut(s)	149, 512
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	303
Bsp143I	GATC	3 cut(s)	3, 196, 373
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	144, 174, 273
BspPI	GGATC	1 cut(s)	381
BsrI	ACTGG	2 cut(s)	143, 464
BssECI	CCNNGG	2 cut(s)	298, 452
BssMI	GATC	3 cut(s)	3, 196, 373
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	23, 299
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	5 cut(s)	131, 161, 281, 332, 425
BstF5I	GGATG	1 cut(s)	359
BstKTI	GATC	3 cut(s)	6, 199, 376
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	3, 196, 373
BstNI	CCWGG	2 cut(s)	23, 299
BstSCI	CCNGG	2 cut(s)	21, 297
BstV1I	GCAGC	2 cut(s)	51, 219
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	303
BtsCI	GGATG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	2 cut(s)	28, 138
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	3 cut(s)	311, 449, 457
CviJI	RGCY	7 cut(s)	28, 42, 56, 127, 297, 303, 355
CviKI_1	RGCY	7 cut(s)	28, 42, 56, 127, 297, 303, 355
CviQI	GTAC	3 cut(s)	311, 449, 457
DdeI	CTNAG	5 cut(s)	131, 161, 281, 332, 425
DpnI	GATC	3 cut(s)	5, 198, 375
DpnII	GATC	3 cut(s)	3, 196, 373
Eco130I	CCWWGG	1 cut(s)	452
EcoO109I	RGGNCCY	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	21, 297
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	452
Esp3I	CGTCTC	1 cut(s)	277
FaiI	YATR	4 cut(s)	181, 438, 484, 488
FaqI	GGGAC	2 cut(s)	149, 512
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	40, 233
FokI	GGATG	1 cut(s)	346
Fsp4HI	GCNGC	2 cut(s)	40, 233
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	2 cut(s)	40, 233
GsuI	CTGGAG	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	109, 159, 267, 326
HphI	GGTGA	2 cut(s)	43, 307
Hpy188I	TCNGA	1 cut(s)	282
Hpy188III	TCNNGA	4 cut(s)	65, 106, 200, 323
HpyAV	CCTTC	2 cut(s)	41, 314
HpyCH4V	TGCA	4 cut(s)	148, 154, 183, 359
HpyF3I	CTNAG	5 cut(s)	131, 161, 281, 332, 425
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 196, 373
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	2 cut(s)	51, 219
LweI	GCATC	2 cut(s)	219, 368
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	473
MalI	GATC	3 cut(s)	5, 198, 375
MboI	GATC	3 cut(s)	3, 196, 373
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	3 cut(s)	13, 118, 336
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	6 cut(s)	20, 61, 64, 113, 217, 328
Mph1103I	ATGCAT	1 cut(s)	185
MseI	TTAA	1 cut(s)	252
MspA1I	CMGCKG	1 cut(s)	42
MspR9I	CCNGG	2 cut(s)	23, 299
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	23, 299
NdeII	GATC	3 cut(s)	3, 196, 373
NmuCI	GTSAC	1 cut(s)	473
NsiI	ATGCAT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	183
PfeI	GAWTC	3 cut(s)	109, 267, 326
PflMI	CCANNNNNTGG	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	21
PkrI	GCNGC	2 cut(s)	41, 234
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	21, 297
PspGI	CCWGG	2 cut(s)	21, 297
PspPI	GGNCC	1 cut(s)	301
PstNI	CAGNNNCTG	2 cut(s)	28, 138
PsuI	RGATCY	1 cut(s)	373
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	3 cut(s)	312, 450, 458
RsaNI	GTAC	3 cut(s)	311, 449, 457
SaqAI	TTAA	1 cut(s)	252
SatI	GCNGC	2 cut(s)	40, 233
Sau3AI	GATC	3 cut(s)	3, 196, 373
Sau96I	GGNCC	1 cut(s)	301
ScaI	AGTACT	1 cut(s)	312
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	23, 299
SetI	ASST	9 cut(s)	12, 30, 44, 52, 90, 193, 320, 357, 458
SfaNI	GCATC	2 cut(s)	219, 368
Sse9I	AATT	3 cut(s)	13, 118, 336
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	21, 297
StyI	CCWWGG	1 cut(s)	452
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	13, 118, 336
TatI	WGTACW	1 cut(s)	310
TfiI	GAWTC	3 cut(s)	109, 267, 326
Tru1I	TTAA	1 cut(s)	252
Tru9I	TTAA	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	2 cut(s)	39, 232
Tsp45I	GTSAC	1 cut(s)	473
Van91I	CCANNNNNTGG	1 cut(s)	28
XbaI	TCTAGA	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.