Rmu_sc0004180.1_g000018

disease resistance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004180.1
Physical Location & Seq
Reverse (-)
118490 .. 118885
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004180.1_g000018.1.cds

Sequence Viewer

Length: 396 bp
atgcacaacctcaactctcttgagatattaaggatcccctattgtgaaggtttcacttccttcctagaagaagggttgcctcataaccttcagtctcttaaagttctgaatctcaagagttgtaaaccacttttcgaatgcggcttgcacagactcacatctcttagagagttgtggatcagtggtgaagatctggaactggtttcctttccacccaagaaagagatggtgcttcccaaatctctcattaagctcataatcgaagactttccgaatctcaagtatctactcagcaaagggtttcagtccctcacatctcttaaaagactctatatctggagttgcccgaagctactgtccattccagatgagggcaggcttctttcactgacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.07

Weight (kDa)

8.36

Isoelectric Point (pI)

54.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 141
AclWI GGATC 3 cut(s) 28, 41, 185
AcuI CTGAAG 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 371
AluBI AGCT 2 cut(s) 253, 352
AluI AGCT 2 cut(s) 253, 352
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 3 cut(s) 28, 41, 185
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 197
AsuII TTCGAA 1 cut(s) 135
BamHI GGATCC 1 cut(s) 33
BbsI GAAGAC 1 cut(s) 270
BccI CCATC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 190
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
BmiI GGNNCC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 270
BpmI CTGGAG 1 cut(s) 358
Bpu14I TTCGAA 1 cut(s) 135
BpuEI CTTGAG 3 cut(s) 41, 98, 263
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 204
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 135
Bsp143I GATC 3 cut(s) 33, 177, 190
BspACI CCGC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 35
BspPI GGATC 3 cut(s) 28, 41, 185
BspT104I TTCGAA 1 cut(s) 135
BsrI ACTGG 1 cut(s) 204
BssMI GATC 3 cut(s) 33, 177, 190
Bst4CI ACNGT 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 146, 377
BstDEI CTNAG 2 cut(s) 164, 290
BstKTI GATC 3 cut(s) 36, 180, 193
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 33, 177, 190
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 2 cut(s) 33, 190
BstYI RGATCY 2 cut(s) 33, 190
BtsIMutI CAGTG 2 cut(s) 187, 386
Cac8I GCNNGC 2 cut(s) 146, 377
CviJI RGCY 4 cut(s) 144, 253, 352, 379
CviKI_1 RGCY 4 cut(s) 144, 253, 352, 379
DdeI CTNAG 2 cut(s) 164, 290
DpnI GATC 3 cut(s) 35, 179, 192
DpnII GATC 3 cut(s) 33, 177, 190
Eco57I CTGAAG 1 cut(s) 74
FaiI YATR 4 cut(s) 84, 257, 333, 394
FaqI GGGAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
FspBI CTAG 1 cut(s) 65
GluI GCNGC 1 cut(s) 142
GsuI CTGGAG 1 cut(s) 358
HinfI GANTC 4 cut(s) 109, 153, 274, 327
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 125
Hpy188I TCNGA 2 cut(s) 108, 273
Hpy188III TCNNGA 5 cut(s) 20, 115, 194, 337, 365
Hpy8I GTNNAC 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 41, 65, 70, 98
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 4, 148
HpyF3I CTNAG 2 cut(s) 164, 290
Kzo9I GATC 3 cut(s) 33, 177, 190
LpnPI CCDG 5 cut(s) 179, 185, 322, 361, 378
MaeI CTAG 1 cut(s) 65
MalI GATC 3 cut(s) 35, 179, 192
MboI GATC 3 cut(s) 33, 177, 190
MboII GAAGA 3 cut(s) 80, 200, 275
MflI RGATCY 2 cut(s) 33, 190
MlyI GAGTC 2 cut(s) 147, 321
MnlI CCTC 4 cut(s) 20, 90, 320, 364
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 4 cut(s) 29, 99, 249, 321
Mva1269I GAATGC 1 cut(s) 143
NdeII GATC 3 cut(s) 33, 177, 190
NlaIV GGNNCC 1 cut(s) 35
NspV TTCGAA 1 cut(s) 135
PctI GAATGC 1 cut(s) 143
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 109, 274
PkrI GCNGC 1 cut(s) 143
PleI GAGTC 2 cut(s) 147, 321
PpsI GAGTC 2 cut(s) 147, 321
PspN4I GGNNCC 1 cut(s) 35
PsuI RGATCY 2 cut(s) 33, 190
SaqAI TTAA 4 cut(s) 29, 99, 249, 321
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 3 cut(s) 33, 177, 190
SchI GAGTC 2 cut(s) 147, 321
SetI ASST 5 cut(s) 12, 52, 90, 255, 354
SfuI TTCGAA 1 cut(s) 135
SmlI CTYRAG 3 cut(s) 20, 113, 278
SmoI CTYRAG 3 cut(s) 20, 113, 278
SsiI CCGC 1 cut(s) 141
SspMI CTAG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 357
TaqI TCGA 2 cut(s) 135, 261
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 109, 274
Tru1I TTAA 4 cut(s) 29, 99, 249, 321
Tru9I TTAA 4 cut(s) 29, 99, 249, 321
TscAI CASTG 2 cut(s) 187, 393
TspRI CASTG 2 cut(s) 187, 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.