RchiOBHm_Chr1g0320271

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001766
Physical Location & Seq
Reverse (-)
7924660 .. 7930747
6088 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55044

Sequence Viewer

Length: 654 bp
ATGTTATGGGTAGAGGAATGTGGAAGTCTCGTTTCCTTCCCAAGCGGAGGGTTGCCATCCAGCCTGATATGCTTGTCTATCTGCATTTGTGCTCAATTGGAAGCCCTCCCCAGAGGCTATGTGGACAACCTCAGCTCTCTTCAGATTTTGTTGTTGAGATGCTGGGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAATTGATCTGGAAATTGGCCCTCTCTCAGAGTGCGGGCTTCACCACTTGGGCAGACTCACCTCTCTTGAAACCTTTTCTATCTACTGTGTAGATCCAGATGTGGTGTCCTTTCCTCCAAAGGATGTGCTGCTCCCTAAATCTCTCATTAAACTCACCATTGCAGGCTTTCCAAATCTGAAGCGCCTGTCATCATCTTTTCAATCACTCACCTCTCTTGAATCCCTTGACATTCTTGGATGCCCAAAGCTAGCATCTATTGTTCCAGAAAAAGAGGATCATCTGCCTCCTTCACTTACACAGCTTCGCATCCAGGACGGCTGTCCGCTGCTCACAAAGAAATACCAACCAGGTAAAGCACGACACTGGCCCAAACAAATTGCTCACATCCCTTACGTTTATGTTGGAGGCTGCGATGACGAAGCCGAAGCCGACCTCCGGGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

217

Amino Acids

23.66

Weight (kDa)

5.2

Isoelectric Point (pI)

53.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 45, 243, 533
AclWI GGATC 2 cut(s) 296, 492
AcuI CTGAAG 2 cut(s) 125, 407
AfiI CCNNNNNNNGG 2 cut(s) 47, 645
AgsI TTSAA 3 cut(s) 278, 410, 428
AjnI CCWGG 2 cut(s) 519, 556
AluBI AGCT 3 cut(s) 135, 457, 511
AluI AGCT 3 cut(s) 135, 457, 511
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 32
AlwI GGATC 2 cut(s) 296, 492
AoxI GGCC 2 cut(s) 226, 575
ApeKI GCWGC 3 cut(s) 337, 535, 618
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 227, 576
AsuC2I CCSGG 1 cut(s) 647
AsuHPI GGTGA 4 cut(s) 242, 259, 355, 409
AsuNHI GCTAGC 1 cut(s) 457
Bbv12I GWGCWC 1 cut(s) 94
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 324, 522, 605
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 541
BciT130I CCWGG 2 cut(s) 521, 558
BcnI CCSGG 1 cut(s) 647
BcoDI GTCTC 1 cut(s) 32
BfaI CTAG 2 cut(s) 185, 458
BfoI RGCGCY 1 cut(s) 394
BisI GCNGC 3 cut(s) 338, 536, 619
BlsI GCNGC 3 cut(s) 339, 537, 620
Bme1390I CCNGG 3 cut(s) 521, 558, 647
BmgT120I GGNCC 2 cut(s) 227, 576
BmrFI CCNGG 3 cut(s) 521, 558, 647
BmsI GCATC 5 cut(s) 149, 185, 437, 470, 525
BmtI GCTAGC 1 cut(s) 461
BoxI GACNNNNGTC 1 cut(s) 528
Bpu10I CCTNAGC 1 cut(s) 131
BpuMI CCSGG 1 cut(s) 647
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 645
Bse1I ACTGG 1 cut(s) 578
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 2 cut(s) 521, 558
BseGI GGATG 6 cut(s) 56, 176, 337, 452, 516, 594
BseLI CCNNNNNNNGG 2 cut(s) 47, 645
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 145, 249
BseNI ACTGG 1 cut(s) 578
BseXI GCAGC 3 cut(s) 324, 522, 605
BseYI CCCAGC 1 cut(s) 162
BshFI GGCC 2 cut(s) 228, 577
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 646
BslI CCNNNNNNNGG 2 cut(s) 47, 645
BsmAI GTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 228, 577
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 3 cut(s) 214, 301, 484
BspACI CCGC 3 cut(s) 45, 243, 533
BspANI GGCC 2 cut(s) 228, 577
BspCNI CTCAG 2 cut(s) 144, 248
BspOI GCTAGC 1 cut(s) 461
BspPI GGATC 2 cut(s) 296, 492
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 578
BssMI GATC 3 cut(s) 214, 301, 484
Bst2UI CCWGG 2 cut(s) 521, 558
Bst4CI ACNGT 1 cut(s) 296
Bst6I CTCTTC 2 cut(s) 144, 183
BstC8I GCNNGC 3 cut(s) 245, 373, 459
BstDEI CTNAG 2 cut(s) 131, 235
BstF5I GGATG 6 cut(s) 56, 176, 337, 452, 516, 594
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 3 cut(s) 217, 304, 487
BstMAI GTCTC 1 cut(s) 32
BstMBI GATC 3 cut(s) 214, 301, 484
BstMWI GCNNNNNNNGC 1 cut(s) 69
BstNI CCWGG 2 cut(s) 521, 558
BstPAI GACNNNNGTC 1 cut(s) 528
BstSCI CCNGG 3 cut(s) 519, 556, 645
BstV1I GCAGC 3 cut(s) 324, 522, 605
BstX2I RGATCY 1 cut(s) 301
BstYI RGATCY 1 cut(s) 301
BsuRI GGCC 2 cut(s) 228, 577
BtgZI GCGATG 1 cut(s) 636
BtsCI GGATG 6 cut(s) 56, 176, 337, 452, 516, 594
BtsIMutI CAGTG 1 cut(s) 571
Cac8I GCNNGC 3 cut(s) 245, 373, 459
CfoI GCGC 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 227, 576
CsiI ACCWGGT 1 cut(s) 556
DdeI CTNAG 2 cut(s) 131, 235
DpnI GATC 3 cut(s) 216, 303, 486
DpnII GATC 3 cut(s) 214, 301, 484
Eam1104I CTCTTC 2 cut(s) 144, 183
EarI CTCTTC 2 cut(s) 144, 183
Eco57I CTGAAG 2 cut(s) 125, 407
EcoRII CCWGG 2 cut(s) 519, 556
FaiI YATR 5 cut(s) 7, 70, 120, 609, 652
FauI CCCGC 1 cut(s) 236
Fnu4HI GCNGC 3 cut(s) 338, 536, 619
FokI GGATG 6 cut(s) 43, 163, 344, 459, 503, 581
Fsp4HI GCNGC 3 cut(s) 338, 536, 619
FspBI CTAG 2 cut(s) 185, 458
GlaI GCGC 1 cut(s) 392
GluI GCNGC 3 cut(s) 338, 536, 619
GsaI CCCAGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 2 cut(s) 228, 577
HapII CCGG 1 cut(s) 646
HhaI GCGC 1 cut(s) 393
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HinfI GANTC 2 cut(s) 264, 428
HpaII CCGG 1 cut(s) 646
HphI GGTGA 4 cut(s) 242, 259, 355, 409
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 3 cut(s) 144, 238, 387
Hpy188III TCNNGA 6 cut(s) 185, 218, 275, 305, 425, 473
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 2 cut(s) 46, 507
HpyCH4III ACNGT 1 cut(s) 296
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 2 cut(s) 84, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 69
HpyF3I CTNAG 2 cut(s) 131, 235
HpySE526I ACGT 1 cut(s) 603
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 3 cut(s) 214, 301, 484
LmnI GCTCC 1 cut(s) 345
Lsp1109I GCAGC 3 cut(s) 324, 522, 605
LweI GCATC 5 cut(s) 149, 185, 437, 470, 525
MabI ACCWGGT 1 cut(s) 556
MaeI CTAG 2 cut(s) 185, 458
MaeII ACGT 1 cut(s) 603
MalI GATC 3 cut(s) 216, 303, 486
MboI GATC 3 cut(s) 214, 301, 484
MboII GAAGA 2 cut(s) 131, 200
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 4 cut(s) 95, 210, 222, 585
MlyI GAGTC 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 592
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 1 cut(s) 646
MspR9I CCNGG 3 cut(s) 521, 558, 647
MunI CAATTG 1 cut(s) 95
MvaI CCWGG 2 cut(s) 521, 558
MwoI GCNNNNNNNGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 647
NdeII GATC 3 cut(s) 214, 301, 484
NheI GCTAGC 1 cut(s) 457
PfeI GAWTC 1 cut(s) 428
PfoI TCCNGGA 1 cut(s) 519
PkrI GCNGC 3 cut(s) 339, 537, 620
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshAI GACNNNNGTC 1 cut(s) 528
Psp6I CCWGG 2 cut(s) 519, 556
PspFI CCCAGC 1 cut(s) 162
PspGI CCWGG 2 cut(s) 519, 556
PspPI GGNCC 2 cut(s) 227, 576
PsuI RGATCY 1 cut(s) 301
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 338, 536, 619
Sau3AI GATC 3 cut(s) 214, 301, 484
Sau96I GGNCC 2 cut(s) 227, 576
SchI GAGTC 1 cut(s) 258
ScrFI CCNGG 3 cut(s) 521, 558, 647
SduI GDGCHC 1 cut(s) 94
SexAI ACCWGGT 1 cut(s) 556
SfaNI GCATC 5 cut(s) 149, 185, 437, 470, 525
Sse9I AATT 4 cut(s) 95, 210, 222, 585
SsiI CCGC 3 cut(s) 45, 243, 533
SspMI CTAG 2 cut(s) 185, 458
StyD4I CCNGG 3 cut(s) 519, 556, 645
TaaI ACNGT 1 cut(s) 296
TaiI ACGT 1 cut(s) 606
TasI AATT 4 cut(s) 95, 210, 222, 585
TfiI GAWTC 1 cut(s) 428
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 578
TseI GCWGC 3 cut(s) 337, 535, 618
TspRI CASTG 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 184
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
XspI CTAG 2 cut(s) 185, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.