Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

7873080 .. 7875950

Gene Structure 2871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ55040

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGCCACTCTCCATTCTTCGCGCCTTAAAAATTCTTACATGTGGAAGTCTCGTTTCCTTCCCGAGAGGAGGGCTGCCATCCAACCTGATATTCTTGTCTATCTTCGAATGCGATCAATTGGAAGCTCTCCCCAGAGGCAATGACAACGTCAGCTCTCTTCAGACTTTGTTATTGGGATCCTGTGGAGGTTTGGCATCCATTCTAGAAGAGGGTTTCCCACCCAACCTAATTAAACTTCATATTTTCGGTCCTAAAAGTTGCAAGCCTCTCTCAGAGTGGGGGCTTCACCACTTGGACAGACTCACCTCTCTTAAAGGCTTGTGTATCAGTGGTGTAGATCCAGATCTGGTGTCCTTTCCGCCAAAGGAGGTGCTGCTCCCTACATCTCTCATTAACCTCAGGATTGGAGGCTTCCCAAATCTGAAGCGCCTGTCATCATCTTTTCAATCACTCACCTCTCTTGAATCCCTTTCAATTGATCGGTGCCCAAAGCTAGCATCTATTATTGGAGAACAAGAGGATCATCTGCCTCTTTCACTTACACAGCTTCGCATCTATAAAGGCTGTCCGCTGCTCGCAAAGAGATACCAAACAGGTAAAGGACGATACTGGCCCAAAGAAATAGCCCACATCCCTTACGTTTATGTCGGAGATTTCAAGGACGAAGCCAAAGCCGACCGCTGGTACCTCCCTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

232

Amino Acids

25.6

Weight (kDa)

8.65

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	684
AccB1I	GGYRCC	2 cut(s)	483, 684
AccII	CGCG	1 cut(s)	21
AciI	CCGC	3 cut(s)	359, 569, 679
AclWI	GGATC	4 cut(s)	171, 184, 332, 528
AcsI	RAATTY	1 cut(s)	30
AcuI	CTGAAG	2 cut(s)	143, 443
AfaI	GTAC	1 cut(s)	686
AfiI	CCNNNNNNNGG	2 cut(s)	68, 681
AflIII	ACRYGT	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	446, 464, 474, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	4 cut(s)	125, 153, 493, 547
AluI	AGCT	4 cut(s)	125, 153, 493, 547
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	4 cut(s)	171, 184, 332, 528
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	1 cut(s)	611
ApeKI	GCWGC	3 cut(s)	73, 373, 571
ApoI	RAATTY	1 cut(s)	30
Asp718I	GGTACC	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	23, 429
AspS9I	GGNCC	2 cut(s)	248, 612
AsuHPI	GGTGA	3 cut(s)	278, 295, 445
AsuII	TTCGAA	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	1 cut(s)	248
AxyI	CCTNAGG	1 cut(s)	398
BaeGI	GKGCMC	1 cut(s)	488
BamHI	GGATCC	1 cut(s)	176
BanI	GGYRCC	2 cut(s)	483, 684
BbvI	GCAGC	3 cut(s)	60, 360, 558
BccI	CCATC	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	203, 494
BfoI	RGCGCY	1 cut(s)	430
BglII	AGATCT	1 cut(s)	343
BisI	GCNGC	3 cut(s)	74, 374, 572
BlsI	GCNGC	3 cut(s)	75, 375, 573
Bme18I	GGWCC	1 cut(s)	248
BmeT110I	CYCGRG	1 cut(s)	61
BmgT120I	GGNCC	2 cut(s)	248, 612
BmiI	GGNNCC	3 cut(s)	178, 485, 686
BmsI	GCATC	3 cut(s)	203, 506, 561
BmtI	GCTAGC	1 cut(s)	497
Bpu14I	TTCGAA	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 681
Bse1I	ACTGG	1 cut(s)	614
Bse21I	CCTNAGG	1 cut(s)	398
Bse3DI	GCAATG	1 cut(s)	145
Bse8I	GATNNNNATC	1 cut(s)	342
BseGI	GGATG	3 cut(s)	77, 194, 630
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	68, 681
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	285, 412
BseNI	ACTGG	1 cut(s)	614
BseRI	GAGGAG	1 cut(s)	81
BseSI	GKGCMC	1 cut(s)	488
BseXI	GCAGC	3 cut(s)	60, 360, 558
Bsh1236I	CGCG	1 cut(s)	21
Bsh1285I	CGRYCG	1 cut(s)	679
BshFI	GGCC	1 cut(s)	613
BshNI	GGYRCC	2 cut(s)	483, 684
BsiEI	CGRYCG	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	61
BslI	CCNNNNNNNGG	2 cut(s)	68, 681
BsmAI	GTCTC	1 cut(s)	53
BsmI	GAATGC	1 cut(s)	113
BsnI	GGCC	1 cut(s)	613
BsoBI	CYCGRG	1 cut(s)	61
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
BspACI	CCGC	3 cut(s)	359, 569, 679
BspANI	GGCC	1 cut(s)	613
BspCNI	CTCAG	2 cut(s)	284, 411
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	3 cut(s)	178, 485, 686
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	4 cut(s)	171, 184, 332, 528
BspT104I	TTCGAA	1 cut(s)	105
BspT107I	GGYRCC	2 cut(s)	483, 684
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	614
BssMI	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
Bst6I	CTCTTC	2 cut(s)	162, 201
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	3 cut(s)	263, 495, 576
BstDEI	CTNAG	2 cut(s)	271, 398
BstF5I	GGATG	3 cut(s)	77, 194, 630
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	23, 429
BstKTI	GATC	6 cut(s)	115, 179, 340, 346, 481, 523
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
BstMCI	CGRYCG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	42
BstSLI	GKGCMC	1 cut(s)	488
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	3 cut(s)	60, 360, 558
BstX2I	RGATCY	3 cut(s)	176, 337, 343
BstYI	RGATCY	3 cut(s)	176, 337, 343
Bsu36I	CCTNAGG	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	77, 194, 630
BtsIMutI	CAGTG	1 cut(s)	334
Cac8I	GCNNGC	3 cut(s)	263, 495, 576
CfoI	GCGC	2 cut(s)	23, 429
Cfr13I	GGNCC	2 cut(s)	248, 612
Csp6I	GTAC	1 cut(s)	685
CviAII	CATG	1 cut(s)	39
CviQI	GTAC	1 cut(s)	685
DdeI	CTNAG	2 cut(s)	271, 398
DpnI	GATC	6 cut(s)	114, 178, 339, 345, 480, 522
DpnII	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
Eam1104I	CTCTTC	2 cut(s)	162, 201
EarI	CTCTTC	2 cut(s)	162, 201
EciI	GGCGGA	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	143, 443
Eco81I	CCTNAGG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	61
FaeI	CATG	1 cut(s)	42
FaiI	YATR	4 cut(s)	40, 240, 558, 645
FatI	CATG	1 cut(s)	38
Fnu4HI	GCNGC	3 cut(s)	74, 374, 572
FokI	GGATG	3 cut(s)	64, 181, 617
Fsp4HI	GCNGC	3 cut(s)	74, 374, 572
FspBI	CTAG	2 cut(s)	203, 494
GlaI	GCGC	2 cut(s)	22, 428
GluI	GCNGC	3 cut(s)	74, 374, 572
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	1 cut(s)	613
HhaI	GCGC	2 cut(s)	23, 429
Hin1II	CATG	1 cut(s)	42
Hin6I	GCGC	2 cut(s)	21, 427
HinP1I	GCGC	2 cut(s)	21, 427
HinfI	GANTC	2 cut(s)	300, 464
HphI	GGTGA	3 cut(s)	278, 295, 445
Hpy188I	TCNGA	4 cut(s)	162, 274, 423, 650
Hpy188III	TCNNGA	5 cut(s)	61, 203, 341, 400, 461
HpyAV	CCTTC	1 cut(s)	67
HpyCH4IV	ACGT	2 cut(s)	147, 639
HpyCH4V	TGCA	1 cut(s)	261
HpyF3I	CTNAG	2 cut(s)	271, 398
HpySE526I	ACGT	2 cut(s)	147, 639
Hsp92II	CATG	1 cut(s)	42
HspAI	GCGC	2 cut(s)	21, 427
KpnI	GGTACC	1 cut(s)	688
Kzo9I	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	3 cut(s)	60, 360, 558
LweI	GCATC	3 cut(s)	203, 506, 561
MaeI	CTAG	2 cut(s)	203, 494
MaeII	ACGT	2 cut(s)	147, 639
MalI	GATC	6 cut(s)	114, 178, 339, 345, 480, 522
MboI	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
MboII	GAAGA	4 cut(s)	8, 94, 149, 218
MfeI	CAATTG	2 cut(s)	116, 474
MflI	RGATCY	3 cut(s)	176, 337, 343
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	4 cut(s)	30, 116, 228, 474
MlyI	GAGTC	1 cut(s)	294
MmeI	TCCRAC	2 cut(s)	105, 628
MseI	TTAA	4 cut(s)	26, 231, 312, 393
MspA1I	CMGCKG	2 cut(s)	571, 681
MunI	CAATTG	2 cut(s)	116, 474
Mva1269I	GAATGC	1 cut(s)	113
MvnI	CGCG	1 cut(s)	21
NdeII	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	1 cut(s)	42
NlaIV	GGNNCC	3 cut(s)	178, 485, 686
NspI	RCATGY	1 cut(s)	42
NspV	TTCGAA	1 cut(s)	105
PciI	ACATGT	1 cut(s)	38
PctI	GAATGC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	464
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	75, 375, 573
PleI	GAGTC	1 cut(s)	294
PpsI	GAGTC	1 cut(s)	294
PscI	ACATGT	1 cut(s)	38
PspN4I	GGNNCC	3 cut(s)	178, 485, 686
PspPI	GGNCC	2 cut(s)	248, 612
PsuI	RGATCY	3 cut(s)	176, 337, 343
PsyI	GACNNNGTC	1 cut(s)	146
RsaI	GTAC	1 cut(s)	686
RsaNI	GTAC	1 cut(s)	685
SaqAI	TTAA	4 cut(s)	26, 231, 312, 393
SatI	GCNGC	3 cut(s)	74, 374, 572
Sau3AI	GATC	6 cut(s)	112, 176, 337, 343, 478, 520
Sau96I	GGNCC	2 cut(s)	248, 612
SchI	GAGTC	1 cut(s)	294
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	3 cut(s)	203, 506, 561
SfuI	TTCGAA	1 cut(s)	105
SinI	GGWCC	1 cut(s)	248
Sse9I	AATT	4 cut(s)	30, 116, 228, 474
SsiI	CCGC	3 cut(s)	359, 569, 679
SspMI	CTAG	2 cut(s)	203, 494
TaiI	ACGT	2 cut(s)	150, 642
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	4 cut(s)	30, 116, 228, 474
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	4 cut(s)	26, 231, 312, 393
Tru9I	TTAA	4 cut(s)	26, 231, 312, 393
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	3 cut(s)	73, 373, 571
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	334
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	248
XapI	RAATTY	1 cut(s)	30
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	42
XspI	CTAG	2 cut(s)	203, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.