Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021951.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1108

Gene Structure 1108 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021951.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1049 bp

aagttggttggccaccttgtctcgaaaatgtaaagatggagtcgtgtaattgtttgacatatttcgtaaggtatcaagtaccgccaagcataagaagaatagagatagcaaaatgtcaaaatttgaaactactggtgaaggatgcttgggagctagagggttgtctggagtggttggagataaaagagtgtgcatctttgacatccttatcaggcaaaggaggccgactacccagaaccctcaaatttgttagaataagtgactgtgaacgattggagtcaataatcaaaacattccacgagggcacttgtcttgatgctcttacgatagagaggtgtgcaaatctcaaatccttaccagaggggctatgccatctctccgctcttcgcatgttatgggtagaggaatgtggaagtctcgtttccttcccaagcggagggttgccatccagcctgatatgcttgtctatctgcagttgtgctcaattggaagccctccccagaggctatgtggacaacctcagctctcttcagattttgttgttgagatgctggggaggtttggcatccattctagaagagggtttcccacccaacctaattgatctggaaattggccctctctcagagtgcgggcttcaccacttgggcagactcacctctcttgaaaccttttctatcttctgtgtagatccagatgtggtgtcctttccgccaaaggaggtgctgctccctaaatctctcattaaactcgacattgcaggcttcccaaatttgaagcgcctgtcatcatcttttcaatcactcacctctcttgaatccctttccattatgtattgtccgaagctagcatctattattccagaacaagaggatcatctgcctctttcacttacacagcttcgcatccgtgagggctgtccgctgctcacaaagaaataccaaccaggtaaaggacgacactggcccaaagaaattgcccacatcccttacgtttatgttggaggctgcgatgacgaagccgaagccgaagctgaccgccgggcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

348

Amino Acids

38.67

Weight (kDa)

5.76

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	382
AciI	CCGC	7 cut(s)	82, 380, 434, 632, 712, 922, 1038
AclWI	GGATC	2 cut(s)	685, 881
AcoI	YGGCCR	1 cut(s)	10
AcsI	RAATTY	3 cut(s)	120, 244, 771
AcuI	CTGAAG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	2 cut(s)	436, 952
AgsI	TTSAA	5 cut(s)	126, 667, 777, 799, 817
AjnI	CCWGG	1 cut(s)	945
AluBI	AGCT	5 cut(s)	153, 524, 846, 900, 1033
AluI	AGCT	5 cut(s)	153, 524, 846, 900, 1033
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	2 cut(s)	25, 421
AlwI	GGATC	2 cut(s)	685, 881
AoxI	GGCC	4 cut(s)	10, 222, 615, 964
ApeKI	GCWGC	3 cut(s)	726, 924, 1007
ApoI	RAATTY	3 cut(s)	120, 244, 771
AspLEI	GCGC	1 cut(s)	782
AspS9I	GGNCC	2 cut(s)	616, 965
AsuC2I	CCSGG	1 cut(s)	1042
AsuHPI	GGTGA	4 cut(s)	147, 631, 648, 798
AsuNHI	GCTAGC	1 cut(s)	846
BaeGI	GKGCMC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	12
BauI	CACGAG	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	483
BbvCI	CCTCAGC	1 cut(s)	520
BbvI	GCAGC	3 cut(s)	713, 911, 994
BccI	CCATC	3 cut(s)	30, 380, 453
BciT130I	CCWGG	1 cut(s)	947
BcnI	CCSGG	1 cut(s)	1042
BcoDI	GTCTC	2 cut(s)	25, 421
BfaI	CTAG	3 cut(s)	154, 574, 847
BfmI	CTRYAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	783
BisI	GCNGC	3 cut(s)	727, 925, 1008
BlsI	GCNGC	3 cut(s)	728, 926, 1009
Bme1390I	CCNGG	2 cut(s)	947, 1042
BmgT120I	GGNCC	2 cut(s)	616, 965
BmrFI	CCNGG	2 cut(s)	947, 1042
BmsI	GCATC	7 cut(s)	132, 202, 306, 538, 574, 859, 914
BmtI	GCTAGC	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	520
BpuMI	CCSGG	1 cut(s)	1042
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 952
Bse1I	ACTGG	2 cut(s)	137, 967
Bse3DI	GCAATG	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	947
BseGI	GGATG	6 cut(s)	147, 202, 445, 565, 905, 983
BseLI	CCNNNNNNNGG	2 cut(s)	436, 952
BseMI	GCAATG	1 cut(s)	755
BseMII	CTCAG	2 cut(s)	534, 638
BseNI	ACTGG	2 cut(s)	137, 967
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	713, 911, 994
BseYI	CCCAGC	1 cut(s)	551
BshFI	GGCC	4 cut(s)	12, 224, 617, 966
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	1041
BslI	CCNNNNNNNGG	2 cut(s)	436, 952
BsmAI	GTCTC	2 cut(s)	25, 421
BsnI	GGCC	4 cut(s)	12, 224, 617, 966
Bsp1286I	GDGCHC	2 cut(s)	307, 483
Bsp143I	GATC	3 cut(s)	603, 690, 873
BspACI	CCGC	7 cut(s)	82, 380, 434, 632, 712, 922, 1038
BspANI	GGCC	4 cut(s)	12, 224, 617, 966
BspCNI	CTCAG	2 cut(s)	533, 637
BspMAI	CTGCAG	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	850
BspPI	GGATC	2 cut(s)	685, 881
BspQI	GCTCTTC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	137, 967
BssMI	GATC	3 cut(s)	603, 690, 873
BssSI	CACGAG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	298
Bst2UI	CCWGG	1 cut(s)	947
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	3 cut(s)	389, 533, 572
BstC8I	GCNNGC	3 cut(s)	634, 762, 848
BstDEI	CTNAG	2 cut(s)	520, 624
BstF5I	GGATG	6 cut(s)	147, 202, 445, 565, 905, 983
BstH2I	RGCGCY	1 cut(s)	783
BstHHI	GCGC	1 cut(s)	782
BstKTI	GATC	3 cut(s)	606, 693, 876
BstMAI	GTCTC	2 cut(s)	25, 421
BstMBI	GATC	3 cut(s)	603, 690, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 458
BstNI	CCWGG	1 cut(s)	947
BstNSI	RCATGY	1 cut(s)	393
BstSCI	CCNGG	2 cut(s)	945, 1040
BstSFI	CTRYAG	1 cut(s)	471
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	3 cut(s)	713, 911, 994
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BsuRI	GGCC	4 cut(s)	12, 224, 617, 966
BtgZI	GCGATG	1 cut(s)	1025
BtsCI	GGATG	6 cut(s)	147, 202, 445, 565, 905, 983
BtsIMutI	CAGTG	1 cut(s)	960
Cac8I	GCNNGC	3 cut(s)	634, 762, 848
CfoI	GCGC	1 cut(s)	782
Cfr13I	GGNCC	2 cut(s)	616, 965
CsiI	ACCWGGT	1 cut(s)	945
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	390
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	520, 624
DpnI	GATC	3 cut(s)	605, 692, 875
DpnII	GATC	3 cut(s)	603, 690, 873
EaeI	YGGCCR	1 cut(s)	10
Eam1104I	CTCTTC	3 cut(s)	389, 533, 572
EarI	CTCTTC	3 cut(s)	389, 533, 572
EciI	GGCGGA	1 cut(s)	701
Eco57I	CTGAAG	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	945
FaeI	CATG	1 cut(s)	393
FatI	CATG	1 cut(s)	389
FauI	CCCGC	1 cut(s)	625
Fnu4HI	GCNGC	3 cut(s)	727, 925, 1008
FokI	GGATG	6 cut(s)	154, 189, 432, 552, 892, 970
Fsp4HI	GCNGC	3 cut(s)	727, 925, 1008
FspBI	CTAG	3 cut(s)	154, 574, 847
GlaI	GCGC	1 cut(s)	781
GluI	GCNGC	3 cut(s)	727, 925, 1008
GsaI	CCCAGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	783
HaeIII	GGCC	4 cut(s)	12, 224, 617, 966
HapII	CCGG	1 cut(s)	1041
HhaI	GCGC	1 cut(s)	782
Hin1II	CATG	1 cut(s)	393
Hin6I	GCGC	1 cut(s)	780
HinP1I	GCGC	1 cut(s)	780
HinfI	GANTC	4 cut(s)	40, 277, 653, 817
HpaII	CCGG	1 cut(s)	1041
HphI	GGTGA	4 cut(s)	147, 631, 648, 798
Hpy166II	GTNNAC	2 cut(s)	268, 513
Hpy188I	TCNGA	3 cut(s)	533, 627, 842
Hpy188III	TCNNGA	9 cut(s)	22, 166, 313, 574, 607, 664, 694, 814, 862
Hpy8I	GTNNAC	2 cut(s)	268, 513
HpyAV	CCTTC	2 cut(s)	132, 435
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	992
HpyCH4V	TGCA	4 cut(s)	193, 340, 473, 760
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 458
HpyF3I	CTNAG	2 cut(s)	520, 624
HpySE526I	ACGT	1 cut(s)	992
Hsp92II	CATG	1 cut(s)	393
HspAI	GCGC	1 cut(s)	780
Kzo9I	GATC	3 cut(s)	603, 690, 873
LguI	GCTCTTC	1 cut(s)	389
LmnI	GCTCC	2 cut(s)	150, 734
Lsp1109I	GCAGC	3 cut(s)	713, 911, 994
LweI	GCATC	7 cut(s)	132, 202, 306, 538, 574, 859, 914
MabI	ACCWGGT	1 cut(s)	945
MaeI	CTAG	3 cut(s)	154, 574, 847
MaeII	ACGT	1 cut(s)	992
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	605, 692, 875
MbiI	CCGCTC	1 cut(s)	382
MboI	GATC	3 cut(s)	603, 690, 873
MboII	GAAGA	5 cut(s)	107, 376, 520, 589, 672
MfeI	CAATTG	1 cut(s)	484
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	2 cut(s)	307, 483
MlsI	TGGCCA	1 cut(s)	12
MluCI	AATT	8 cut(s)	48, 120, 244, 484, 599, 611, 771, 974
MluNI	TGGCCA	1 cut(s)	12
MlyI	GAGTC	3 cut(s)	49, 286, 647
MmeI	TCCRAC	2 cut(s)	155, 981
Mox20I	TGGCCA	1 cut(s)	12
MscI	TGGCCA	1 cut(s)	12
MseI	TTAA	1 cut(s)	746
Msp20I	TGGCCA	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	924
MspI	CCGG	1 cut(s)	1041
MspR9I	CCNGG	2 cut(s)	947, 1042
MunI	CAATTG	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	947
MwoI	GCNNNNNNNGC	2 cut(s)	221, 458
NciI	CCSGG	1 cut(s)	1042
NdeII	GATC	3 cut(s)	603, 690, 873
NheI	GCTAGC	1 cut(s)	846
NlaIII	CATG	1 cut(s)	393
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	393
PciSI	GCTCTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	817
PkrI	GCNGC	3 cut(s)	728, 926, 1009
PleI	GAGTC	3 cut(s)	48, 285, 647
PpsI	GAGTC	3 cut(s)	48, 285, 647
Psp6I	CCWGG	1 cut(s)	945
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	1 cut(s)	945
PspPI	GGNCC	2 cut(s)	616, 965
PstI	CTGCAG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	389
SaqAI	TTAA	1 cut(s)	746
SatI	GCNGC	3 cut(s)	727, 925, 1008
Sau3AI	GATC	3 cut(s)	603, 690, 873
Sau96I	GGNCC	2 cut(s)	616, 965
SchI	GAGTC	3 cut(s)	49, 286, 647
ScrFI	CCNGG	2 cut(s)	947, 1042
SduI	GDGCHC	2 cut(s)	307, 483
SexAI	ACCWGGT	1 cut(s)	945
SfaNI	GCATC	7 cut(s)	132, 202, 306, 538, 574, 859, 914
SfcI	CTRYAG	1 cut(s)	471
Sse9I	AATT	8 cut(s)	48, 120, 244, 484, 599, 611, 771, 974
SsiI	CCGC	7 cut(s)	82, 380, 434, 632, 712, 922, 1038
SspMI	CTAG	3 cut(s)	154, 574, 847
StyD4I	CCNGG	2 cut(s)	945, 1040
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	995
TaqI	TCGA	2 cut(s)	23, 752
TasI	AATT	8 cut(s)	48, 120, 244, 484, 599, 611, 771, 974
TfiI	GAWTC	1 cut(s)	817
Tru1I	TTAA	1 cut(s)	746
Tru9I	TTAA	1 cut(s)	746
TscAI	CASTG	1 cut(s)	967
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	3 cut(s)	726, 924, 1007
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	898
TspRI	CASTG	1 cut(s)	967
XapI	RAATTY	3 cut(s)	120, 244, 771
XbaI	TCTAGA	1 cut(s)	573
XceI	RCATGY	1 cut(s)	393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	507
XspI	CTAG	3 cut(s)	154, 574, 847

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.