Rh5CG317500

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001766
Physical Location & Seq
Reverse (-)
35169862 .. 35176931
7070 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG317500.1

Sequence Viewer

Length: 1404 bp
ATGGTGGTTTCAATTGCCAACTACAAACAGCTCTGTGAATTAAACGTGCGCGATTGCAAAGGGGTGGTGTATAAAAGTGTGCACCACTTTGAGTTACTCAAGTCTATTTATCTTTCAGATTTTTCAGTGCTGAGATTTCAAACTGGAGGATTCATGACCGGATTAAGAAAGGTGGAACAATTGATGATAGCCAATGGTGATGAACTTTCATCTGAATGGCAGAATGAAGGTAGATTGCTGCAACACCTGATATCTCTTCGAAGTTTGTTCATTGAAAGAAACTCCCACCTTCTTCAATTGCATTGCCTGACTTCACTTCAAATGCTTCACATATATAGATGCCCAAGTCTAGTTTCCATTCCAGAGTCATGTTTGCCAGCTTCTCTTAAAGATATAGAGATTGAAAGGTGCGGTTCCCTGACGTGCTTTGCAAGATACAAAATACCCCCGAGTCTAAGAACAATAGAGATTAAACATTGCCAGTGTTTGAAATATTTGGTAGAGGAGGAGCAGGTGGAGGGTTGCTCCTCTGCTTCATCTTCTCTTGAGTACTTGAGCATATCTAACTGTCCATCTCTTATCTCCTTATCATCCAGAGGTGGATTACCAAAGGCACTTAAACACCTTTACATAAGGGATTGTGAACAACTGGAGACAATATCTGAAGGCTTCTATGATGACACTTGCCTCGAAGAACTTCATATTGGGCGTTGTGCAAATCTGAAATTCTTACCGGAGGGCCTATGTCTTCTTGCCAATCTTCGTAGGTTAATTGTTTTTGTCTGTGGAAGTCTTGTTTCCTTCCCAAGAGGAGGGTTGCCAACAAGGCCCTCCAACCTGACATTCCTTGTTATCTCTGATTGTCAAAGATGGAAAGCCTTCCCCAAAGGCATGATCGACCTCAACTCTCTCCAGGAGCTGGTGATTGGAAGCTGTGAAGGTTTGGCGTCCATTCTAGAGGAGGGTTTTCCCCCGAACCTAACATCACTTATCCTTTTGAATCCCAGCAATTGTAAGCCACTCACAGACTGGGGCTTGCACTTGCACAGACTCACCTCTCTTACAGAGTTATGCATCCAAGGTGTTGATCAAGACTTGGTTTCCTTTCCACCAGAGGAAATGCTGCTTCCTACATCTCTCATTAAACTTACCATTGGATTCTTCCCGAATCTGAGACGAATATCCAGCCAGGGCCTTCAAGTCCTCACCTCTCTTGAATCTCTTAGAATTGATGATTGCCCAAAGCTTGCATCCATTCCAGAGGACCTGCCCTCTTCACTCACACAACTTTACATCTATGATGACTGTCCTCTGCTTAGAAAGAGATATAAACCAGATATACCACGATACTGGGCCAAAATAAGTCACATTCCGTACATAGAGATTGGAGACTACAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC

Protein Analysis

467

Amino Acids

52.72

Weight (kDa)

6.2

Isoelectric Point (pI)

53.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 502
Acc36I ACCTGC 2 cut(s) 502, 1275
AccB7I CCANNNNNTGG 1 cut(s) 919
AccII CGCG 1 cut(s) 51
AciI CCGC 1 cut(s) 411
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 1 cut(s) 684
AcyI GRCGYC 1 cut(s) 947
AfaI GTAC 2 cut(s) 551, 1376
AfiI CCNNNNNNNGG 2 cut(s) 812, 919
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 2 cut(s) 912, 1188
AjuI GAANNNNNNNTTGG 6 cut(s) 337, 369, 687, 719, 827, 859
AluBI AGCT 5 cut(s) 31, 380, 919, 933, 1246
AluI AGCT 5 cut(s) 31, 380, 919, 933, 1246
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 3 cut(s) 647, 1168, 1383
Alw44I GTGCAC 1 cut(s) 80
AlwNI CAGNNNCTG 1 cut(s) 919
Ama87I CYCGRG 1 cut(s) 448
AoxI GGCC 4 cut(s) 739, 827, 1192, 1353
ApaLI GTGCAC 1 cut(s) 80
ApeKI GCWGC 2 cut(s) 238, 1123
ApoI RAATTY 1 cut(s) 725
Asp700I GAANNNNTTC 2 cut(s) 696, 878
AspLEI GCGC 1 cut(s) 51
AspS9I GGNCC 5 cut(s) 739, 828, 1192, 1264, 1353
AsuHPI GGTGA 4 cut(s) 209, 934, 1045, 1198
AsuII TTCGAA 1 cut(s) 259
AvaI CYCGRG 1 cut(s) 448
AvaII GGWCC 1 cut(s) 1264
BaeGI GKGCMC 1 cut(s) 84
BbsI GAAGAC 1 cut(s) 740
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 225, 1110
BccI CCATC 2 cut(s) 580, 864
BciT130I CCWGG 2 cut(s) 914, 1190
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 3 cut(s) 647, 1168, 1383
BfaI CTAG 2 cut(s) 350, 956
BfuAI ACCTGC 2 cut(s) 502, 1275
BglI GCCNNNNNGGC 1 cut(s) 826
BisI GCNGC 2 cut(s) 239, 1124
BlsI GCNGC 2 cut(s) 240, 1125
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 2 cut(s) 914, 1190
Bme18I GGWCC 1 cut(s) 1264
BmeT110I CYCGRG 1 cut(s) 448
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 5 cut(s) 739, 828, 1192, 1264, 1353
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 2 cut(s) 914, 1190
BmrI ACTGGG 2 cut(s) 1039, 1360
BmsI GCATC 3 cut(s) 329, 1083, 1259
BmuI ACTGGG 2 cut(s) 1039, 1360
BpiI GAAGAC 1 cut(s) 740
BplI GAGNNNNNCTC 2 cut(s) 509, 541
BpmI CTGGAG 3 cut(s) 165, 671, 896
Bpu14I TTCGAA 1 cut(s) 259
BpuEI CTTGAG 3 cut(s) 83, 566, 574
BsaHI GRCGYC 1 cut(s) 947
BsaJI CCNNGG 2 cut(s) 1078, 1189
BsaWI WCCGGW 2 cut(s) 158, 733
Bsc4I CCNNNNNNNGG 2 cut(s) 812, 919
Bse1I ACTGG 5 cut(s) 148, 481, 654, 1034, 1355
Bse3DI GCAATG 2 cut(s) 301, 475
BseBI CCWGG 2 cut(s) 914, 1190
BseDI CCNNGG 2 cut(s) 1078, 1189
BseGI GGATG 3 cut(s) 590, 1074, 1250
BseLI CCNNNNNNNGG 2 cut(s) 812, 919
BseMI GCAATG 2 cut(s) 301, 475
BseMII CTCAG 2 cut(s) 122, 1163
BseNI ACTGG 5 cut(s) 148, 481, 654, 1034, 1355
BseRI GAGGAG 5 cut(s) 517, 518, 521, 825, 974
BseSI GKGCMC 1 cut(s) 84
BseXI GCAGC 2 cut(s) 225, 1110
BseYI CCCAGC 1 cut(s) 1004
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 4 cut(s) 741, 829, 1194, 1355
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 1 cut(s) 448
BsiSI CCGG 2 cut(s) 159, 734
BslI CCNNNNNNNGG 2 cut(s) 812, 919
BsmAI GTCTC 3 cut(s) 647, 1168, 1383
BsmBI CGTCTC 1 cut(s) 1168
BsnI GGCC 4 cut(s) 741, 829, 1194, 1355
BsoBI CYCGRG 1 cut(s) 448
Bsp119I TTCGAA 1 cut(s) 259
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 2 cut(s) 894, 1087
BspACI CCGC 1 cut(s) 411
BspANI GGCC 4 cut(s) 741, 829, 1194, 1355
BspCNI CTCAG 2 cut(s) 123, 1164
BspFNI CGCG 1 cut(s) 51
BspHI TCATGA 1 cut(s) 153
BspLI GGNNCC 1 cut(s) 415
BspMI ACCTGC 2 cut(s) 502, 1275
BspT104I TTCGAA 1 cut(s) 259
BsrDI GCAATG 2 cut(s) 301, 475
BsrI ACTGG 5 cut(s) 148, 481, 654, 1034, 1355
BssECI CCNNGG 2 cut(s) 1078, 1189
BssMI GATC 2 cut(s) 894, 1087
BssNI GRCGYC 1 cut(s) 947
BssT1I CCWWGG 1 cut(s) 1078
Bst2UI CCWGG 2 cut(s) 914, 1190
Bst4CI ACNGT 2 cut(s) 569, 1307
Bst6I CTCTTC 2 cut(s) 261, 1279
BstACI GRCGYC 1 cut(s) 947
BstBI TTCGAA 1 cut(s) 259
BstC8I GCNNGC 3 cut(s) 378, 1037, 1248
BstDEI CTNAG 5 cut(s) 131, 455, 1172, 1223, 1316
BstF5I GGATG 3 cut(s) 590, 1074, 1250
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 2 cut(s) 897, 1090
BstMAI GTCTC 3 cut(s) 647, 1168, 1383
BstMBI GATC 2 cut(s) 894, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 826
BstNI CCWGG 2 cut(s) 914, 1190
BstSCI CCNGG 2 cut(s) 912, 1188
BstSLI GKGCMC 1 cut(s) 84
BstUI CGCG 1 cut(s) 51
BstV1I GCAGC 2 cut(s) 225, 1110
BstV2I GAAGAC 1 cut(s) 740
BstXI CCANNNNNNTGG 1 cut(s) 1350
BsuRI GGCC 4 cut(s) 741, 829, 1194, 1355
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 3 cut(s) 590, 1074, 1250
BtsIMutI CAGTG 2 cut(s) 132, 488
BveI ACCTGC 2 cut(s) 502, 1275
Cac8I GCNNGC 3 cut(s) 378, 1037, 1248
CaiI CAGNNNCTG 1 cut(s) 919
CciI TCATGA 1 cut(s) 153
CfoI GCGC 1 cut(s) 51
Cfr13I GGNCC 5 cut(s) 739, 828, 1192, 1264, 1353
CseI GACGC 1 cut(s) 936
Csp6I GTAC 2 cut(s) 550, 1375
CviAII CATG 3 cut(s) 154, 369, 892
CviQI GTAC 2 cut(s) 550, 1375
DdeI CTNAG 5 cut(s) 131, 455, 1172, 1223, 1316
DpnI GATC 2 cut(s) 896, 1089
DpnII GATC 2 cut(s) 894, 1087
Eam1104I CTCTTC 2 cut(s) 261, 1279
EarI CTCTTC 2 cut(s) 261, 1279
Eco130I CCWWGG 1 cut(s) 1078
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 1264
Eco57I CTGAAG 1 cut(s) 684
Eco88I CYCGRG 1 cut(s) 448
EcoO109I RGGNCCY 4 cut(s) 739, 828, 1192, 1264
EcoRII CCWGG 2 cut(s) 912, 1188
EcoRV GATATC 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 1078
EcoT22I ATGCAT 1 cut(s) 1076
ErhI CCWWGG 1 cut(s) 1078
Esp3I CGTCTC 1 cut(s) 1168
FaeI CATG 3 cut(s) 157, 372, 895
FatI CATG 3 cut(s) 153, 368, 891
FbaI TGATCA 1 cut(s) 1087
Fnu4HI GCNGC 2 cut(s) 239, 1124
FokI GGATG 3 cut(s) 577, 1061, 1237
Fsp4HI GCNGC 2 cut(s) 239, 1124
FspBI CTAG 2 cut(s) 350, 956
GlaI GCGC 1 cut(s) 50
GluI GCNGC 2 cut(s) 239, 1124
GsaI CCCAGC 1 cut(s) 1008
GsuI CTGGAG 3 cut(s) 165, 671, 896
HaeIII GGCC 4 cut(s) 741, 829, 1194, 1355
HapII CCGG 2 cut(s) 159, 734
HgaI GACGC 1 cut(s) 936
HhaI GCGC 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 947
Hin1II CATG 3 cut(s) 157, 372, 895
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HindIII AAGCTT 1 cut(s) 1244
HinfI GANTC 8 cut(s) 150, 365, 451, 1000, 1050, 1158, 1168, 1217
HpaII CCGG 2 cut(s) 159, 734
HphI GGTGA 4 cut(s) 209, 934, 1045, 1198
Hpy166II GTNNAC 2 cut(s) 82, 644
Hpy188I TCNGA 6 cut(s) 118, 214, 664, 723, 859, 1173
Hpy188III TCNNGA 9 cut(s) 154, 362, 545, 594, 956, 1091, 1165, 1214, 1259
Hpy8I GTNNAC 2 cut(s) 82, 644
HpyAV CCTTC 7 cut(s) 221, 299, 659, 811, 889, 932, 1205
HpyCH4III ACNGT 2 cut(s) 569, 1307
HpyCH4IV ACGT 2 cut(s) 45, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 826
HpyF3I CTNAG 5 cut(s) 131, 455, 1172, 1223, 1316
HpySE526I ACGT 2 cut(s) 45, 422
Hsp92I GRCGYC 1 cut(s) 947
Hsp92II CATG 3 cut(s) 157, 372, 895
HspAI GCGC 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 2 cut(s) 894, 1087
LmnI GCTCC 3 cut(s) 508, 530, 916
Lsp1109I GCAGC 2 cut(s) 225, 1110
LweI GCATC 3 cut(s) 329, 1083, 1259
MaeI CTAG 2 cut(s) 350, 956
MaeII ACGT 2 cut(s) 45, 422
MaeIII GTNAC 2 cut(s) 93, 1364
MalI GATC 2 cut(s) 896, 1089
MboI GATC 2 cut(s) 894, 1087
MboII GAAGA 8 cut(s) 248, 284, 531, 704, 740, 752, 1153, 1266
MfeI CAATTG 4 cut(s) 12, 179, 296, 1009
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 8 cut(s) 12, 38, 179, 296, 725, 771, 1009, 1227
MlyI GAGTC 3 cut(s) 374, 460, 1044
MmeI TCCRAC 1 cut(s) 858
Mph1103I ATGCAT 1 cut(s) 1076
MroXI GAANNNNTTC 2 cut(s) 696, 878
MseI TTAA 7 cut(s) 41, 164, 387, 471, 618, 770, 1143
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 2 cut(s) 159, 734
MspR9I CCNGG 2 cut(s) 914, 1190
MunI CAATTG 4 cut(s) 12, 179, 296, 1009
MvaI CCWGG 2 cut(s) 914, 1190
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 1 cut(s) 826
NdeII GATC 2 cut(s) 894, 1087
NlaIII CATG 3 cut(s) 157, 372, 895
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 1364
NsiI ATGCAT 1 cut(s) 1076
NspV TTCGAA 1 cut(s) 259
PagI TCATGA 1 cut(s) 153
PaqCI CACCTGC 1 cut(s) 502
PdmI GAANNNNTTC 2 cut(s) 696, 878
PfeI GAWTC 5 cut(s) 150, 1000, 1158, 1168, 1217
PflMI CCANNNNNTGG 1 cut(s) 919
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 2 cut(s) 240, 1125
PleI GAGTC 3 cut(s) 373, 459, 1044
PpsI GAGTC 3 cut(s) 373, 459, 1044
PpuMI RGGWCCY 1 cut(s) 1264
Psp5II RGGWCCY 1 cut(s) 1264
Psp6I CCWGG 2 cut(s) 912, 1188
PspFI CCCAGC 1 cut(s) 1004
PspGI CCWGG 2 cut(s) 912, 1188
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 5 cut(s) 739, 828, 1192, 1264, 1353
PspPPI RGGWCCY 1 cut(s) 1264
PstNI CAGNNNCTG 1 cut(s) 919
RsaI GTAC 2 cut(s) 551, 1376
RsaNI GTAC 2 cut(s) 550, 1375
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 7 cut(s) 41, 164, 387, 471, 618, 770, 1143
SatI GCNGC 2 cut(s) 239, 1124
Sau3AI GATC 2 cut(s) 894, 1087
Sau96I GGNCC 5 cut(s) 739, 828, 1192, 1264, 1353
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 3 cut(s) 374, 460, 1044
ScrFI CCNGG 2 cut(s) 914, 1190
SduI GDGCHC 1 cut(s) 84
SfaNI GCATC 3 cut(s) 329, 1083, 1259
SfuI TTCGAA 1 cut(s) 259
SinI GGWCC 1 cut(s) 1264
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 3 cut(s) 98, 545, 553
SmoI CTYRAG 3 cut(s) 98, 545, 553
Sse9I AATT 8 cut(s) 12, 38, 179, 296, 725, 771, 1009, 1227
SsiI CCGC 1 cut(s) 411
SspI AATATT 1 cut(s) 494
SspMI CTAG 2 cut(s) 350, 956
StyD4I CCNGG 2 cut(s) 912, 1188
StyI CCWWGG 1 cut(s) 1078
TaaI ACNGT 2 cut(s) 569, 1307
TaiI ACGT 2 cut(s) 48, 425
TaqI TCGA 3 cut(s) 259, 690, 897
TasI AATT 8 cut(s) 12, 38, 179, 296, 725, 771, 1009, 1227
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 5 cut(s) 150, 1000, 1158, 1168, 1217
Tru1I TTAA 7 cut(s) 41, 164, 387, 471, 618, 770, 1143
Tru9I TTAA 7 cut(s) 41, 164, 387, 471, 618, 770, 1143
TscAI CASTG 2 cut(s) 132, 488
TseFI GTSAC 1 cut(s) 1364
TseI GCWGC 2 cut(s) 238, 1123
Tsp45I GTSAC 1 cut(s) 1364
TspDTI ATGAA 7 cut(s) 142, 198, 216, 240, 259, 525, 689
TspGWI ACGGA 1 cut(s) 1362
TspRI CASTG 2 cut(s) 132, 488
Van91I CCANNNNNTGG 1 cut(s) 919
VneI GTGCAC 1 cut(s) 80
VpaK11BI GGWCC 1 cut(s) 1264
XapI RAATTY 1 cut(s) 725
XbaI TCTAGA 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 1 cut(s) 1026
XmnI GAANNNNTTC 2 cut(s) 696, 878
XspI CTAG 2 cut(s) 350, 956
ZrmI AGTACT 1 cut(s) 551
Zsp2I ATGCAT 1 cut(s) 1076
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.