Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327331.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

23 .. 532

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327331.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggacaagtacatctctcttcagacattgtggatcggttactgtaaaggtttgtcatccattttagaagagggttttcccccaaacctagttgagctttacattgtgaaccctttacgttgcaagccactctgtgaatgggggttgcagttgcacagactcaattctctgagagagttgtggatccagggtgtagatccaaatctggtgttatttccaccagaggagatggagatgctgctccctaaatctctcattaaaatcagaattggagacttcccaaagctaaggcgcctatccagcaaggcccttcagtcgctcacctctcttgaatctcttagaattgaagattgtccaaagctagcatccattccagaggagaagctgtctctttcacttacacaactgcatatctccaattgtcctctgctaaagaagagatacagaccagggaaagcaccacactggcccaaaataggccacattccttacatacagattggagagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

169

Amino Acids

19.43

Weight (kDa)

8.98

Isoelectric Point (pI)

51.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	291
AclWI	GGATC	4 cut(s)	41, 178, 191, 191
AcuI	CTGAAG	2 cut(s)	5, 296
AcyI	GRCGYC	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	476
AgsI	TTSAA	2 cut(s)	332, 347
AjnI	CCWGG	2 cut(s)	186, 448
AluBI	AGCT	4 cut(s)	97, 286, 361, 385
AluI	AGCT	4 cut(s)	97, 286, 361, 385
Alw26I	GTCTC	2 cut(s)	267, 393
AlwI	GGATC	4 cut(s)	41, 178, 191, 191
AoxI	GGCC	3 cut(s)	306, 467, 478
ApeKI	GCWGC	1 cut(s)	238
AspLEI	GCGC	1 cut(s)	294
AspS9I	GGNCC	2 cut(s)	307, 468
AsuHPI	GGTGA	1 cut(s)	313
AsuNHI	GCTAGC	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	225
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	188, 450
BcoDI	GTCTC	2 cut(s)	267, 393
BfaI	CTAG	2 cut(s)	89, 362
BfoI	RGCGCY	1 cut(s)	295
BisI	GCNGC	1 cut(s)	239
BlsI	GCNGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	188, 450
BmgT120I	GGNCC	2 cut(s)	307, 468
BmiI	GGNNCC	2 cut(s)	185, 293
BmrFI	CCNGG	2 cut(s)	188, 450
BmsI	GCATC	2 cut(s)	225, 374
BmtI	GCTAGC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	187, 449
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	470
Bse8I	GATNNNNATC	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	188, 450
BseDI	CCNNGG	2 cut(s)	187, 449
BseGI	GGATG	2 cut(s)	56, 365
BseJI	GATNNNNATC	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	239, 392
BseXI	GCAGC	1 cut(s)	225
BshFI	GGCC	3 cut(s)	308, 469, 480
BshNI	GGYRCC	1 cut(s)	291
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	2 cut(s)	267, 393
BsnI	GGCC	3 cut(s)	308, 469, 480
Bsp143I	GATC	3 cut(s)	33, 183, 196
BspANI	GGCC	3 cut(s)	308, 469, 480
BspCNI	CTCAG	1 cut(s)	162
BspLI	GGNNCC	2 cut(s)	185, 293
BspOI	GCTAGC	1 cut(s)	365
BspPI	GGATC	4 cut(s)	41, 178, 191, 191
BspT107I	GGYRCC	1 cut(s)	291
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	2 cut(s)	187, 449
BssMI	GATC	3 cut(s)	33, 183, 196
BssNI	GRCGYC	1 cut(s)	292
Bst2UI	CCWGG	2 cut(s)	188, 450
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	3 cut(s)	24, 63, 431
BstACI	GRCGYC	1 cut(s)	292
BstC8I	GCNNGC	2 cut(s)	125, 363
BstDEI	CTNAG	3 cut(s)	170, 287, 338
BstF5I	GGATG	2 cut(s)	56, 365
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	1 cut(s)	294
BstKTI	GATC	3 cut(s)	36, 186, 199
BstMAI	GTCTC	2 cut(s)	267, 393
BstMBI	GATC	3 cut(s)	33, 183, 196
BstMWI	GCNNNNNNNGC	1 cut(s)	300
BstNI	CCWGG	2 cut(s)	188, 450
BstSCI	CCNGG	2 cut(s)	186, 448
BstV1I	GCAGC	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	183, 196
BstYI	RGATCY	2 cut(s)	183, 196
BsuRI	GGCC	3 cut(s)	308, 469, 480
BtsCI	GGATG	2 cut(s)	56, 365
BtsIMutI	CAGTG	1 cut(s)	463
Cac8I	GCNNGC	2 cut(s)	125, 363
CfoI	GCGC	1 cut(s)	294
Cfr13I	GGNCC	2 cut(s)	307, 468
Csp6I	GTAC	1 cut(s)	10
CviJI	RGCY	8 cut(s)	97, 127, 286, 308, 361, 385, 469, 480
CviKI_1	RGCY	8 cut(s)	97, 127, 286, 308, 361, 385, 469, 480
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	170, 287, 338
DinI	GGCGCC	1 cut(s)	293
DpnI	GATC	3 cut(s)	35, 185, 198
DpnII	GATC	3 cut(s)	33, 183, 196
DraIII	CACNNNGTG	1 cut(s)	134
Eam1104I	CTCTTC	3 cut(s)	24, 63, 431
EarI	CTCTTC	3 cut(s)	24, 63, 431
Eco57I	CTGAAG	2 cut(s)	5, 296
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	186, 448
EgeI	GGCGCC	1 cut(s)	293
EheI	GGCGCC	1 cut(s)	293
FaiI	YATR	2 cut(s)	411, 494
Fnu4HI	GCNGC	1 cut(s)	239
FokI	GGATG	2 cut(s)	43, 352
Fsp4HI	GCNGC	1 cut(s)	239
FspBI	CTAG	2 cut(s)	89, 362
GlaI	GCGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	239
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	308, 469, 480
HhaI	GCGC	1 cut(s)	294
Hin1I	GRCGYC	1 cut(s)	292
Hin6I	GCGC	1 cut(s)	292
HinP1I	GCGC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	159, 332
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	109
Hpy188I	TCNGA	3 cut(s)	24, 171, 266
Hpy188III	TCNNGA	2 cut(s)	329, 374
Hpy8I	GTNNAC	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	4 cut(s)	123, 148, 154, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	300
HpyF3I	CTNAG	3 cut(s)	170, 287, 338
HpySE526I	ACGT	1 cut(s)	118
Hsp92I	GRCGYC	1 cut(s)	292
HspAI	GCGC	1 cut(s)	292
KasI	GGCGCC	1 cut(s)	291
Kzo9I	GATC	3 cut(s)	33, 183, 196
LmnI	GCTCC	1 cut(s)	246
LpnPI	CCDG	9 cut(s)	173, 191, 200, 234, 313, 387, 435, 451, 462
Lsp1109I	GCAGC	1 cut(s)	225
LweI	GCATC	2 cut(s)	225, 374
MaeI	CTAG	2 cut(s)	89, 362
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	35, 185, 198
MboI	GATC	3 cut(s)	33, 183, 196
MboII	GAAGA	4 cut(s)	11, 80, 359, 448
MfeI	CAATTG	1 cut(s)	418
MflI	RGATCY	2 cut(s)	183, 196
MluCI	AATT	4 cut(s)	163, 267, 342, 418
Mly113I	GGCGCC	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	64, 217, 334, 370, 435
MseI	TTAA	1 cut(s)	258
MspR9I	CCNGG	2 cut(s)	188, 450
MunI	CAATTG	1 cut(s)	418
MvaI	CCWGG	2 cut(s)	188, 450
MwoI	GCNNNNNNNGC	1 cut(s)	300
NarI	GGCGCC	1 cut(s)	292
NdeII	GATC	3 cut(s)	33, 183, 196
NheI	GCTAGC	1 cut(s)	361
NlaIV	GGNNCC	2 cut(s)	185, 293
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	240
PleI	GAGTC	1 cut(s)	153
PluTI	GGCGCC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	153
Psp6I	CCWGG	2 cut(s)	186, 448
PspGI	CCWGG	2 cut(s)	186, 448
PspN4I	GGNNCC	2 cut(s)	185, 293
PspPI	GGNCC	2 cut(s)	307, 468
PsuI	RGATCY	2 cut(s)	183, 196
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	1 cut(s)	239
Sau3AI	GATC	3 cut(s)	33, 183, 196
Sau96I	GGNCC	2 cut(s)	307, 468
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	188, 450
SetI	ASST	8 cut(s)	52, 90, 99, 121, 288, 326, 363, 387
SfaNI	GCATC	2 cut(s)	225, 374
SfoI	GGCGCC	1 cut(s)	293
Sse9I	AATT	4 cut(s)	163, 267, 342, 418
SspDI	GGCGCC	1 cut(s)	291
SspMI	CTAG	2 cut(s)	89, 362
StyD4I	CCNGG	2 cut(s)	186, 448
TaaI	ACNGT	1 cut(s)	44
TaiI	ACGT	1 cut(s)	121
TasI	AATT	4 cut(s)	163, 267, 342, 418
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	470
TseI	GCWGC	1 cut(s)	238
TspRI	CASTG	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	2 cut(s)	89, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.