Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003629.1

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

282691 .. 283197

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003629.1_g000066.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ctgaactctctccaggactttcatggtttggcgtcatttctagatgagggttttcccaccaatctaacaagactagtagtttggaaagtcaagaattgcaaggcgctattggagttgggattgcacagactcacctctcttagagagttgtatatcagtggtgaagatccagatttggtgtcctttccacccgaggacaagatgacaccacccctgcccaaatctctcattcaaatcacaattgccgacttcccaaatcttactaaactcagcgaaggctttcaattcctcacctctcttgaatatcttgaagtatcttcttgtcctaaactagcatcaattccagaagggggtttgcctctttcacttaatcgactttatgtcatccccaaccccaaaacccgccatggcctccacctccaagaacatgcattctccaaatggaacaaatacctgtgttttcccgttaatattgaacctggtcttcgtttgggcccagaccagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

168

Amino Acids

18.91

Weight (kDa)

6.22

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	1 cut(s)	161
AcyI	GRCGYC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	350
AgsI	TTSAA	5 cut(s)	233, 284, 302, 311, 476
AhdI	GACNNNNNGTC	1 cut(s)	380
AhlI	ACTAGT	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	12, 478
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	409, 493
ApaI	GGGCCC	1 cut(s)	497
ArsI	GACNNNNNNTTYG	2 cut(s)	63, 95
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	2 cut(s)	493, 494
AsuHPI	GGTGA	3 cut(s)	124, 173, 283
AvaI	CYCGRG	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	497
BanII	GRGCYC	1 cut(s)	497
BbsI	GAAGAC	1 cut(s)	476
BciT130I	CCWGG	2 cut(s)	14, 480
BcuI	ACTAGT	1 cut(s)	73
BfaI	CTAG	3 cut(s)	41, 74, 332
BfoI	RGCGCY	1 cut(s)	107
Bme1390I	CCNGG	2 cut(s)	14, 480
BmeRI	GACNNNNNGTC	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	2 cut(s)	493, 494
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	2 cut(s)	14, 480
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	476
BsaHI	GRCGYC	1 cut(s)	32
BsaJI	CCNNGG	2 cut(s)	192, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	14, 480
BseDI	CCNNGG	2 cut(s)	192, 406
BseGI	GGATG	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	283
BseNI	ACTGG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	497
BshFI	GGCC	2 cut(s)	411, 495
BsiHKCI	CYCGRG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	411, 495
BsoBI	CYCGRG	1 cut(s)	191
Bsp120I	GGGCCC	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	497
Bsp143I	GATC	1 cut(s)	166
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	2 cut(s)	411, 495
BspCNI	CTCAG	1 cut(s)	282
BspLI	GGNNCC	1 cut(s)	495
BspPI	GGATC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	502
BssECI	CCNNGG	2 cut(s)	192, 406
BssMI	GATC	1 cut(s)	166
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	406
Bst2UI	CCWGG	2 cut(s)	14, 480
BstACI	GRCGYC	1 cut(s)	32
BstDEI	CTNAG	2 cut(s)	140, 269
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	1 cut(s)	384
BstH2I	RGCGCY	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	169
BstMBI	GATC	1 cut(s)	166
BstNI	CCWGG	2 cut(s)	14, 480
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	12, 478
BstSLI	GKGCMC	1 cut(s)	497
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	2 cut(s)	411, 495
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	1 cut(s)	384
BtsIMutI	CAGTG	1 cut(s)	163
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	493, 494
CseI	GACGC	1 cut(s)	21
CsiI	ACCWGGT	1 cut(s)	478
CviAII	CATG	3 cut(s)	23, 407, 428
CviJI	RGCY	3 cut(s)	279, 411, 495
CviKI_1	RGCY	3 cut(s)	279, 411, 495
DdeI	CTNAG	2 cut(s)	140, 269
DpnI	GATC	1 cut(s)	168
DpnII	GATC	1 cut(s)	166
DriI	GACNNNNNGTC	1 cut(s)	380
Eam1105I	GACNNNNNGTC	1 cut(s)	380
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	191
EcoRII	CCWGG	2 cut(s)	12, 478
EcoT14I	CCWWGG	1 cut(s)	406
EcoT22I	ATGCAT	1 cut(s)	433
EcoT38I	GRGCYC	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	3 cut(s)	26, 410, 431
FaiI	YATR	5 cut(s)	24, 153, 381, 408, 429
FatI	CATG	3 cut(s)	22, 406, 427
FauI	CCCGC	1 cut(s)	410
FokI	GGATG	1 cut(s)	371
FriOI	GRGCYC	1 cut(s)	497
FspBI	CTAG	3 cut(s)	41, 74, 332
GlaI	GCGC	1 cut(s)	105
HaeII	RGCGCY	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	411, 495
HgaI	GACGC	1 cut(s)	21
HhaI	GCGC	1 cut(s)	106
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	26, 410, 431
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	1 cut(s)	129
HphI	GGTGA	3 cut(s)	124, 173, 283
Hpy188III	TCNNGA	6 cut(s)	41, 91, 170, 299, 308, 344
HpyAV	CCTTC	2 cut(s)	269, 341
HpyCH4V	TGCA	3 cut(s)	99, 124, 431
HpyF3I	CTNAG	2 cut(s)	140, 269
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	3 cut(s)	26, 410, 431
HspAI	GCGC	1 cut(s)	104
Kzo9I	GATC	1 cut(s)	166
LpnPI	CCDG	7 cut(s)	26, 183, 227, 357, 465, 467, 492
LweI	GCATC	1 cut(s)	344
MabI	ACCWGGT	1 cut(s)	478
MaeI	CTAG	3 cut(s)	41, 74, 332
MalI	GATC	1 cut(s)	168
MboI	GATC	1 cut(s)	166
MboII	GAAGA	3 cut(s)	176, 309, 476
MfeI	CAATTG	1 cut(s)	240
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	497
MluCI	AATT	4 cut(s)	94, 240, 284, 339
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	8 cut(s)	40, 145, 187, 299, 304, 369, 422, 428
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	369, 468
MspR9I	CCNGG	2 cut(s)	14, 480
MunI	CAATTG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	2 cut(s)	14, 480
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	1 cut(s)	166
NlaIII	CATG	3 cut(s)	26, 410, 431
NlaIV	GGNNCC	1 cut(s)	495
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	431
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	12
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
Psp6I	CCWGG	2 cut(s)	12, 478
PspGI	CCWGG	2 cut(s)	12, 478
PspN4I	GGNNCC	1 cut(s)	495
PspOMI	GGGCCC	1 cut(s)	493
PspPI	GGNCC	2 cut(s)	493, 494
PsuI	RGATCY	1 cut(s)	166
SaqAI	TTAA	2 cut(s)	369, 468
Sau3AI	GATC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	493, 494
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	2 cut(s)	14, 480
SduI	GDGCHC	1 cut(s)	497
SetI	ASST	5 cut(s)	137, 296, 420, 456, 481
SexAI	ACCWGGT	1 cut(s)	478
SfaNI	GCATC	1 cut(s)	344
SpeI	ACTAGT	1 cut(s)	73
Sse9I	AATT	4 cut(s)	94, 240, 284, 339
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	472
SspMI	CTAG	3 cut(s)	41, 74, 332
StyD4I	CCNGG	2 cut(s)	12, 478
StyI	CCWWGG	1 cut(s)	406
TaqI	TCGA	1 cut(s)	373
TasI	AATT	4 cut(s)	94, 240, 284, 339
Tru1I	TTAA	2 cut(s)	369, 468
Tru9I	TTAA	2 cut(s)	369, 468
TscAI	CASTG	1 cut(s)	163
TspDTI	ATGAA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	163
XbaI	TCTAGA	1 cut(s)	40
XceI	RCATGY	1 cut(s)	431
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	41, 74, 332
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.