Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Reverse (-)

2687069 .. 2688319

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02401.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGTCCAGCACAACCTCAGCTCTCTTCAGAGTTTAACAATTGCTTACTGTGAAGGTTTGGTGCCTGTTCTAGTACAGGGTTTTCCCTCAAACTTAACAGTACTCAAAATAGTGGATCCCAAGAGTTGTAAGCCACTCTCTGAGTGGGGATTGCAGTTGAAGAAACTCGCCTCTCTAAAAGAGTTGTGGATCTCTGGTGTTGATCCATATCTGGTGTCCTTTCCACCAGAAAATATGGAGTTGATGCTCCCTAAATCTCTCATTAGACTCGACATCGCAAGCTTCCCAAGTCTAAGGCGGCTGTCCAGGAAGGCCCTTCAGTCCCTCACCTCTCTTGAATATCTTGAGCTAACATCTCCTTGCCCCTCAAGATGGTCTGTTGCATATGAAAACCGGGTGCTGGAGCTGTTGCCACTGGAACTCTTCAACGGCATTAGAGCAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

150

Amino Acids

16.8

Weight (kDa)

6.6

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	1 cut(s)	298
AclWI	GGATC	4 cut(s)	110, 123, 197, 197
AcuI	CTGAAG	2 cut(s)	11, 302
AfaI	GTAC	2 cut(s)	75, 102
AfiI	CCNNNNNNNGG	2 cut(s)	372, 400
AgsI	TTSAA	3 cut(s)	160, 338, 427
AjnI	CCWGG	1 cut(s)	305
AluBI	AGCT	4 cut(s)	21, 282, 349, 406
AluI	AGCT	4 cut(s)	21, 282, 349, 406
AlwI	GGATC	4 cut(s)	110, 123, 197, 197
AoxI	GGCC	1 cut(s)	312
AspS9I	GGNCC	2 cut(s)	4, 313
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	4
BamHI	GGATCC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	366
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	307
BcnI	CCSGG	1 cut(s)	395
BfaI	CTAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	2 cut(s)	307, 395
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 313
BmiI	GGNNCC	2 cut(s)	63, 117
BmrFI	CCNGG	2 cut(s)	307, 395
BmsI	GCATC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	422
Bpu10I	CCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	2 cut(s)	352, 365
BpuMI	CCSGG	1 cut(s)	395
BsaBI	GATNNNNATC	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	2 cut(s)	372, 400
Bse1I	ACTGG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	2 cut(s)	372, 400
BseMII	CTCAG	2 cut(s)	31, 132
BseNI	ACTGG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	314
BshNI	GGYRCC	1 cut(s)	61
BsiSI	CCGG	1 cut(s)	394
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	372, 400
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	314
Bsp143I	GATC	3 cut(s)	115, 189, 202
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	30, 133
BspLI	GGNNCC	2 cut(s)	63, 117
BspPI	GGATC	4 cut(s)	110, 123, 197, 197
BspT107I	GGYRCC	1 cut(s)	61
BsrI	ACTGG	1 cut(s)	420
BssMI	GATC	3 cut(s)	115, 189, 202
Bst2UI	CCWGG	1 cut(s)	307
Bst4CI	ACNGT	2 cut(s)	50, 100
Bst6I	CTCTTC	2 cut(s)	30, 428
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	3 cut(s)	17, 141, 293
BstKTI	GATC	3 cut(s)	118, 192, 205
BstMBI	GATC	3 cut(s)	115, 189, 202
BstNI	CCWGG	1 cut(s)	307
BstSCI	CCNGG	2 cut(s)	305, 393
BstX2I	RGATCY	2 cut(s)	115, 189
BstYI	RGATCY	2 cut(s)	115, 189
BsuRI	GGCC	1 cut(s)	314
BtgZI	GCGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	413
Cac8I	GCNNGC	1 cut(s)	280
Cfr13I	GGNCC	2 cut(s)	4, 313
Csp6I	GTAC	2 cut(s)	74, 101
CviJI	RGCY	7 cut(s)	21, 133, 282, 301, 314, 349, 406
CviKI_1	RGCY	7 cut(s)	21, 133, 282, 301, 314, 349, 406
CviQI	GTAC	2 cut(s)	74, 101
DdeI	CTNAG	3 cut(s)	17, 141, 293
DpnI	GATC	3 cut(s)	117, 191, 204
DpnII	GATC	3 cut(s)	115, 189, 202
Eam1104I	CTCTTC	2 cut(s)	30, 428
EarI	CTCTTC	2 cut(s)	30, 428
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	11, 302
EcoO109I	RGGNCCY	1 cut(s)	313
EcoRII	CCWGG	1 cut(s)	305
FaiI	YATR	4 cut(s)	208, 236, 385, 387
FaqI	GGGAC	1 cut(s)	307
FauNDI	CATATG	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	280
HinfI	GANTC	1 cut(s)	267
HpaII	CCGG	1 cut(s)	394
HphI	GGTGA	1 cut(s)	319
Hpy188I	TCNGA	2 cut(s)	30, 142
Hpy188III	TCNNGA	3 cut(s)	335, 344, 369
HpyAV	CCTTC	3 cut(s)	47, 304, 326
HpyCH4III	ACNGT	2 cut(s)	50, 100
HpyCH4V	TGCA	2 cut(s)	154, 383
HpyF3I	CTNAG	3 cut(s)	17, 141, 293
Kzo9I	GATC	3 cut(s)	115, 189, 202
LmnI	GCTCC	2 cut(s)	252, 403
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	71
MalI	GATC	3 cut(s)	117, 191, 204
MboI	GATC	3 cut(s)	115, 189, 202
MboII	GAAGA	3 cut(s)	17, 172, 415
MfeI	CAATTG	1 cut(s)	39
MflI	RGATCY	2 cut(s)	115, 189
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	261
MnlI	CCTC	6 cut(s)	26, 97, 181, 335, 340, 376
MseI	TTAA	2 cut(s)	35, 95
MspI	CCGG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	307, 395
MunI	CAATTG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	307
NciI	CCSGG	1 cut(s)	395
NdeI	CATATG	1 cut(s)	385
NdeII	GATC	3 cut(s)	115, 189, 202
NlaIV	GGNNCC	2 cut(s)	63, 117
PfoI	TCCNGGA	1 cut(s)	305
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
Psp6I	CCWGG	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	305
PspN4I	GGNNCC	2 cut(s)	63, 117
PspPI	GGNCC	2 cut(s)	4, 313
PsuI	RGATCY	2 cut(s)	115, 189
RsaI	GTAC	2 cut(s)	75, 102
RsaNI	GTAC	2 cut(s)	74, 101
SaqAI	TTAA	2 cut(s)	35, 95
SatI	GCNGC	1 cut(s)	299
Sau3AI	GATC	3 cut(s)	115, 189, 202
Sau96I	GGNCC	2 cut(s)	4, 313
ScaI	AGTACT	1 cut(s)	102
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	307, 395
SetI	ASST	7 cut(s)	18, 23, 58, 284, 332, 351, 408
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	2 cut(s)	344, 367
SmoI	CTYRAG	2 cut(s)	344, 367
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	2 cut(s)	305, 393
TaaI	ACNGT	2 cut(s)	50, 100
TaqI	TCGA	1 cut(s)	270
TasI	AATT	1 cut(s)	39
TatI	WGTACW	2 cut(s)	73, 100
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	35, 95
Tru9I	TTAA	2 cut(s)	35, 95
TscAI	CASTG	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	420
VpaK11BI	GGWCC	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	141
XspI	CTAG	1 cut(s)	71
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.