Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0001766

Physical Location & Seq

Genomic Coordinates Forward (+)

2037352 .. 2037843

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCACAATATCAACTCTCTTGAGGAATTGAGCATCGACTACCGTGAAGGTTTGACTTTTCCTCCCAACCTCACATCACTTATAATTTGGAAGGTCAAGAGCTGTAAGTCATTGTGGGAGTTGGAGTGGGGGTTGCACAGACTCACCTCTCTTAGAAATTTGTGGATAAGTGGTGAAAACCCGGATACGGTGTCGTTTCCACCCGACATGGTCCGCATGGAGACGCTCCTCCCCAAATCTCTCACTCACCTCTATATAGAATTCTTCCCGAATCTAAAGAAACTGAGCAGCAAGGGCTTTCAATTCCTCACCTCCCTTCAATCTCTGCATCTTTGGAATTGTCCAAAGCTAGCATCCATTCCAGAGGAGGGTCTGCCTCCTTCACTAGGGGGACTTGTCATCAATGGGTGTCCAGTGCTAAAAGAGAGATGCCAACCAGGAAAAGGACGCTACTGGCACAAAATATTCCACATCCCTTCCATACAAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

164

Amino Acids

18.72

Weight (kDa)

8.71

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001766)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g02200 FvH4_7g02200 FvH4_7g02200 FvH4_7g02401 FvH4_7g02420
malus_domestica	MD00G1168500.v1.1 MD03G1026300.v1.1 MD03G1042200.v1.1 MD07G1033400.v1.1 MD07G1033500.v1.1 MD11G1030100.v1.1
prunus_persica	Prupe.2G040600_v2.0.a1
pyrus_communis	pycom11g02400 pycom11g02440 pycom11g02540 pycom11g02570 pycom11g02690 pycom11g02740 pycom11g02780 pycom13g25150
rosa_chinensis	RchiOBHm_Chr1g0320151 RchiOBHm_Chr1g0320231 RchiOBHm_Chr1g0320271 RchiOBHm_Chr1g0320441 RchiOBHm_Chr1g0320651 RchiOBHm_Chr1g0321001 RchiOBHm_Chr4g0408891 RchiOBHm_Chr5g0041681
rosa_laevigata	RLG00000026798
rosa_multiflora	Rmu_co8013808.1_g000001 Rmu_co8327331.1_g000001 Rmu_sc0000576.1_g000015 Rmu_sc0000576.1_g000025 Rmu_sc0001049.1_g000010 Rmu_sc0003145.1_g000003 Rmu_sc0003629.1_g000066 Rmu_sc0004180.1_g000018 Rmu_sc0004180.1_g000019 Rmu_sc0004180.1_g000031 Rmu_sc0021951.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284020 Rroxscaffold_4G00284030 Rroxscaffold_4G00327800
rosa_samantha	Rh1BG007600 Rh1BG008000 Rh1BG042200 Rh5CG317500 Rh7BG428200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	83
AciI	CCGC	1 cut(s)	214
AcsI	RAATTY	2 cut(s)	157, 260
AfiI	CCNNNNNNNGG	4 cut(s)	187, 368, 386, 443
AgsI	TTSAA	2 cut(s)	302, 320
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	2 cut(s)	102, 349
AluI	AGCT	2 cut(s)	102, 349
Alw26I	GTCTC	1 cut(s)	215
ApeKI	GCWGC	1 cut(s)	288
ApoI	RAATTY	2 cut(s)	157, 260
AspS9I	GGNCC	1 cut(s)	211
AsuC2I	CCSGG	1 cut(s)	182
AsuHPI	GGTGA	4 cut(s)	136, 185, 239, 301
AsuNHI	GCTAGC	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	211
BbvI	GCAGC	1 cut(s)	300
BciT130I	CCWGG	1 cut(s)	438
BciVI	GTATCC	1 cut(s)	178
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	350, 386
BfuI	GTATCC	1 cut(s)	178
BisI	GCNGC	1 cut(s)	289
BlsI	GCNGC	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	182, 438
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmrFI	CCNGG	2 cut(s)	182, 438
BmsI	GCATC	4 cut(s)	42, 337, 362, 419
BmtI	GCTAGC	1 cut(s)	353
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	182
BsaXI	ACNNNNNCTCC	6 cut(s)	46, 76, 110, 116, 140, 146
Bsc4I	CCNNNNNNNGG	4 cut(s)	187, 368, 386, 443
Bse1I	ACTGG	2 cut(s)	413, 458
BseBI	CCWGG	1 cut(s)	438
BseGI	GGATG	2 cut(s)	353, 471
BseLI	CCNNNNNNNGG	4 cut(s)	187, 368, 386, 443
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	2 cut(s)	413, 458
BseRI	GAGGAG	2 cut(s)	218, 380
BseXI	GCAGC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	4 cut(s)	187, 368, 386, 443
BsmAI	GTCTC	1 cut(s)	215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	405
BspACI	CCGC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	276
BspOI	GCTAGC	1 cut(s)	353
BsrI	ACTGG	2 cut(s)	413, 458
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	2 cut(s)	44, 190
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	2 cut(s)	152, 284
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	2 cut(s)	353, 471
BstMAI	GTCTC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	180, 436
BstV1I	GCAGC	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	178
BtsCI	GGATG	2 cut(s)	353, 471
BtsIMutI	CAGTG	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	351
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	232, 456
CviAII	CATG	2 cut(s)	208, 217
CviJI	RGCY	3 cut(s)	102, 297, 349
CviKI_1	RGCY	3 cut(s)	102, 297, 349
DdeI	CTNAG	2 cut(s)	152, 284
Eco47I	GGWCC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	211, 220
FaiI	YATR	7 cut(s)	83, 209, 218, 255, 257, 482, 490
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	2 cut(s)	207, 216
Fnu4HI	GCNGC	1 cut(s)	289
FokI	GGATG	2 cut(s)	340, 458
Fsp4HI	GCNGC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	350, 386
GluI	GCNGC	1 cut(s)	289
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	2 cut(s)	232, 456
Hin1II	CATG	2 cut(s)	211, 220
HinfI	GANTC	2 cut(s)	141, 271
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	4 cut(s)	136, 185, 239, 301
Hpy188III	TCNNGA	4 cut(s)	20, 97, 268, 362
HpyAV	CCTTC	5 cut(s)	41, 85, 326, 390, 486
HpyCH4III	ACNGT	2 cut(s)	44, 190
HpyCH4V	TGCA	3 cut(s)	4, 136, 328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	2 cut(s)	152, 284
Hsp92II	CATG	2 cut(s)	211, 220
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	6 cut(s)	195, 375, 423, 426, 439, 450
Lsp1109I	GCAGC	1 cut(s)	300
LweI	GCATC	4 cut(s)	42, 337, 362, 419
MaeI	CTAG	2 cut(s)	350, 386
MboII	GAAGA	1 cut(s)	256
MluCI	AATT	6 cut(s)	26, 84, 157, 260, 302, 337
MlyI	GAGTC	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	102
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	182, 438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	1 cut(s)	294
NciI	CCSGG	1 cut(s)	182
NheI	GCTAGC	1 cut(s)	349
NlaIII	CATG	2 cut(s)	211, 220
PfeI	GAWTC	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	290
PleI	GAGTC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	135
PsiI	TTATAA	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	211
PsyI	GACNNNGTC	1 cut(s)	209
SatI	GCNGC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	135
ScrFI	CCNGG	2 cut(s)	182, 438
SetI	ASST	8 cut(s)	52, 72, 96, 104, 149, 252, 314, 351
SfaNI	GCATC	4 cut(s)	42, 337, 362, 419
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	6 cut(s)	26, 84, 157, 260, 302, 337
SsiI	CCGC	1 cut(s)	214
SspI	AATATT	1 cut(s)	465
SspMI	CTAG	2 cut(s)	350, 386
StyD4I	CCNGG	2 cut(s)	180, 436
TaaI	ACNGT	2 cut(s)	44, 190
TaqI	TCGA	1 cut(s)	36
TasI	AATT	6 cut(s)	26, 84, 157, 260, 302, 337
TfiI	GAWTC	1 cut(s)	271
TscAI	CASTG	1 cut(s)	420
TseI	GCWGC	1 cut(s)	288
TspRI	CASTG	1 cut(s)	420
Tth111I	GACNNNGTC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	211
XagI	CCTNNNNNAGG	1 cut(s)	384
XapI	RAATTY	2 cut(s)	157, 260
XspI	CTAG	2 cut(s)	350, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.